Wall clock time and date at job start Tue Mar 31 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46961 * 2 1 4 4 C 1.53004 * 109.47467 * 240.00438 * 2 1 3 5 5 C 1.53001 * 109.46490 * 300.00063 * 4 2 1 6 6 C 1.52998 * 109.47168 * 299.99361 * 5 4 2 7 7 C 1.53000 * 109.47071 * 60.00566 * 6 5 4 8 8 H 1.09010 * 109.46883 * 59.99524 * 7 6 5 9 9 N 1.46494 * 109.47592 * 179.97438 * 7 6 5 10 10 C 1.39674 * 120.00122 * 274.99870 * 9 7 6 11 11 C 1.39006 * 120.03845 * 359.73120 * 10 9 7 12 12 C 1.38155 * 120.06158 * 179.69942 * 11 10 9 13 13 C 1.38169 * 120.14154 * 0.58986 * 12 11 10 14 14 C 1.38913 * 120.07774 * 359.68292 * 13 12 11 15 15 O 1.35753 * 120.02994 * 179.97438 * 14 13 12 16 16 C 1.34830 * 117.00030 * 174.48476 * 15 14 13 17 17 H 1.07999 * 120.00126 * 5.05523 * 16 15 14 18 18 C 1.38655 * 120.00008 * 185.06008 * 16 15 14 19 19 N 1.31556 * 120.00056 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46898 * 89.99671 * 20 18 16 22 22 H 1.48498 * 109.47069 * 209.99793 * 20 18 16 23 23 H 1.48498 * 109.47464 * 330.00184 * 20 18 16 24 24 C 1.38746 * 120.04143 * 179.97438 * 10 9 7 25 25 C 1.53002 * 109.47153 * 299.99945 * 7 6 5 26 26 H 1.08991 * 109.47104 * 300.00015 * 1 2 3 27 27 H 1.09007 * 109.47102 * 60.00154 * 1 2 3 28 28 H 1.09004 * 109.46570 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47403 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47440 * 300.00167 * 3 2 1 31 31 H 1.09000 * 109.47313 * 60.00230 * 3 2 1 32 32 H 1.08994 * 109.47164 * 59.99501 * 4 2 1 33 33 H 1.09000 * 109.47223 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47758 * 59.99879 * 5 4 2 35 35 H 1.09004 * 109.46890 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47278 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47657 * 300.00575 * 6 5 4 38 38 H 0.97002 * 120.00502 * 94.99675 * 9 7 6 39 39 H 1.08007 * 119.97117 * 359.96596 * 11 10 9 40 40 H 1.07998 * 119.92719 * 180.27390 * 12 11 10 41 41 H 1.07998 * 119.96066 * 179.70218 * 13 12 11 42 42 H 0.97004 * 119.99919 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.07283 * 359.97438 * 24 10 9 44 44 H 1.09000 * 109.47349 * 299.99848 * 25 7 6 45 45 H 1.08994 * 109.47291 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5301 -2.1636 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2491 9 7 2.0179 -2.8547 2.4453 10 6 1.3161 -3.9497 2.9544 11 6 0.1515 -4.3812 2.3299 12 6 -0.5397 -5.4681 2.8294 13 6 -0.0829 -6.1220 3.9576 14 6 1.0771 -5.6923 4.5896 15 8 1.5247 -6.3352 5.6983 16 6 2.7144 -5.9415 6.1957 17 1 3.2268 -5.0946 5.7637 18 6 3.2802 -6.6239 7.2619 19 7 2.6559 -7.6553 7.7885 20 14 4.9288 -6.0788 7.9507 21 1 4.7095 -5.0804 9.0279 22 1 5.6472 -7.2547 8.5043 23 1 5.7404 -5.4680 6.8674 24 6 1.7776 -4.6050 4.0869 25 6 2.0401 -0.7213 1.2492 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 -0.2074 -2.1392 33 1 3.1301 -0.7215 -1.2490 34 1 0.4401 -2.1637 -1.2493 35 1 1.8938 -2.6776 -2.1391 36 1 1.6771 -3.9127 -0.0003 37 1 3.1301 -2.8849 -0.0001 38 1 2.8284 -2.5518 2.8838 39 1 -0.2109 -3.8689 1.4509 40 1 -1.4418 -5.8042 2.3399 41 1 -0.6282 -6.9684 4.3483 42 1 3.0519 -8.1329 8.5341 43 1 2.6802 -4.2697 4.5761 44 1 3.1301 -0.7212 1.2493 45 1 1.6764 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079975458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:10 Heat of formation + Delta-G solvation = -43.380578 kcal Electronic energy + Delta-G solvation = -23114.500609 eV Core-core repulsion = 19902.608098 eV Total energy + Delta-G solvation = -3211.892511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09399 -40.36157 -38.45154 -35.97510 -34.22284 -33.53481 -31.64523 -30.36892 -28.71665 -28.16425 -27.33856 -27.10672 -23.83854 -23.23584 -22.55824 -21.47728 -19.72698 -19.53724 -18.75997 -17.27663 -16.82636 -16.55306 -15.99998 -15.88495 -15.60956 -15.48912 -15.30023 -14.97594 -14.67643 -14.42176 -14.31289 -14.00384 -13.57224 -13.45792 -13.25321 -12.91997 -12.76627 -12.71877 -12.49991 -12.45046 -12.30821 -12.18620 -12.10649 -11.87317 -11.82282 -11.36637 -11.23608 -11.16105 -10.92583 -10.82894 -10.53004 -9.10171 -8.45373 -8.21072 -6.13696 0.77086 0.93032 1.33608 1.44157 1.51463 2.18383 2.53312 2.89503 3.27163 3.59585 3.68676 3.78450 3.91892 4.15715 4.21726 4.23161 4.33951 4.42970 4.46161 4.51077 4.58003 4.62927 4.73825 4.75308 4.83727 4.85572 4.96869 5.01577 5.08857 5.11346 5.14650 5.16273 5.17299 5.21182 5.23929 5.32617 5.40215 5.44648 5.50220 5.52659 5.66328 5.76312 5.81413 6.05388 6.12931 6.63451 6.89151 7.00041 7.83574 8.78387 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021453 B = 0.003572 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.894268 B = 7837.334348 C = 8656.083961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.057 4.057 3 C -0.139 4.139 4 C -0.106 4.106 5 C -0.115 4.115 6 C -0.131 4.131 7 C 0.154 3.846 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.260 3.740 11 C -0.264 4.264 12 C -0.026 4.026 13 C -0.263 4.263 14 C 0.153 3.847 15 O -0.233 6.233 16 C -0.411 4.411 17 H 0.098 0.902 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.319 4.319 25 C -0.111 4.111 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.396 0.604 39 H 0.139 0.861 40 H 0.151 0.849 41 H 0.106 0.894 42 H 0.272 0.728 43 H 0.112 0.888 44 H 0.066 0.934 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 17.716 -19.373 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.057 4.057 3 C -0.197 4.197 4 C -0.143 4.143 5 C -0.153 4.153 6 C -0.170 4.170 7 C 0.050 3.950 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.155 3.845 11 C -0.287 4.287 12 C -0.045 4.045 13 C -0.284 4.284 14 C 0.102 3.898 15 O -0.139 6.139 16 C -0.487 4.487 17 H 0.116 0.884 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.178 1.178 24 C -0.343 4.343 25 C -0.149 4.149 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.231 0.769 39 H 0.157 0.843 40 H 0.169 0.831 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.130 0.870 44 H 0.085 0.915 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.375 17.477 -19.250 26.037 hybrid contribution 1.055 -0.260 1.101 1.547 sum -0.320 17.217 -18.149 25.018 Atomic orbital electron populations 1.22012 0.94316 1.02100 1.02078 1.20462 0.95944 0.95354 0.93987 1.21842 1.01021 0.94618 1.02176 1.21610 1.00544 0.94886 0.97294 1.21536 1.01378 0.95685 0.96658 1.21997 1.00778 0.99244 0.95006 1.21050 0.99100 0.91382 0.83476 0.90211 1.44838 1.29213 1.31886 1.31080 1.17545 0.90653 0.86365 0.89899 1.20542 0.98635 1.03608 1.05879 1.20822 0.98212 0.92955 0.92474 1.20248 0.99546 1.06623 1.01972 1.19633 0.93396 0.90752 0.85998 1.83946 1.36461 1.56478 1.37022 1.21784 0.95489 1.15511 1.15934 0.88445 1.26585 1.03805 0.95440 0.96283 1.70192 1.40751 1.20507 1.24639 0.84596 0.74767 0.78157 0.78712 1.18761 1.19468 1.17834 1.20517 1.06350 1.03771 1.03615 1.21820 1.00988 0.93414 0.98639 0.93043 0.91540 0.92342 0.92599 0.91589 0.92816 0.90606 0.92062 0.91042 0.91284 0.93026 0.92550 0.76940 0.84335 0.83093 0.87597 0.91886 0.87010 0.91504 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 7.78 71.98 0.56 -1.42 16 2 C -0.06 -0.77 0.77 -52.18 -0.04 -0.81 16 3 C -0.14 -1.64 8.47 71.98 0.61 -1.03 16 4 C -0.11 -1.34 4.73 30.60 0.14 -1.20 16 5 C -0.11 -1.69 5.65 30.59 0.17 -1.51 16 6 C -0.13 -2.64 5.45 30.59 0.17 -2.48 16 7 C 0.15 3.31 1.87 44.99 0.08 3.39 16 8 H 0.08 1.76 4.75 -2.38 -0.01 1.74 16 9 N -0.74 -21.17 5.25 -319.01 -1.67 -22.85 16 10 C 0.26 9.57 6.63 38.20 0.25 9.82 16 11 C -0.26 -8.83 8.86 22.43 0.20 -8.63 16 12 C -0.03 -0.93 10.03 22.23 0.22 -0.70 16 13 C -0.26 -11.95 9.99 22.42 0.22 -11.73 16 14 C 0.15 8.09 6.64 22.56 0.15 8.24 16 15 O -0.23 -14.64 9.76 -22.78 -0.22 -14.86 16 16 C -0.41 -24.85 9.49 67.92 0.64 -24.20 16 17 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 18 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 19 N -0.92 -58.13 13.67 21.61 0.30 -57.84 16 20 Si 1.02 44.06 29.55 68.60 2.03 46.09 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 24 C -0.32 -14.73 9.01 22.52 0.20 -14.52 16 25 C -0.11 -1.92 4.20 30.60 0.13 -1.80 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.06 0.84 4.81 -2.39 -0.01 0.83 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.99 6.43 -2.39 -0.02 0.98 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 1.22 7.75 -2.39 -0.02 1.21 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.40 10.83 8.61 -92.71 -0.80 10.04 16 39 H 0.14 3.72 6.14 -2.91 -0.02 3.70 16 40 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.11 5.30 5.64 -2.91 -0.02 5.28 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -71.68 347.94 4.80 -66.88 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.18 Total: 32.11 kcal Atomic # 6 Polarization: -53.72 SS G_CDS: 4.19 Total: -49.53 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.38 Total: -80.69 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.22 Total: -14.86 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -71.68 4.80 -66.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079975458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.501 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds