Wall clock time and date at job start Tue Mar 31 2020 06:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.46876 * 2 1 4 4 C 1.53000 * 109.47089 * 119.99622 * 2 1 3 5 5 C 1.52997 * 109.46888 * 83.29653 * 4 2 1 6 6 C 1.53002 * 109.47023 * 61.82698 * 5 4 2 7 7 C 1.52995 * 109.47240 * 301.82372 * 5 4 2 8 8 C 1.50700 * 109.46769 * 181.82156 * 5 4 2 9 9 O 1.21280 * 120.00446 * 0.02562 * 8 5 4 10 10 N 1.34789 * 119.99769 * 180.02562 * 8 5 4 11 11 C 1.39230 * 119.99617 * 184.72085 * 10 8 5 12 12 C 1.39486 * 119.83974 * 324.36800 * 11 10 8 13 13 C 1.36370 * 120.17019 * 180.30020 * 12 11 10 14 14 C 1.40869 * 119.82922 * 359.48005 * 13 12 11 15 15 C 1.41156 * 120.16795 * 180.24951 * 14 13 12 16 16 H 1.07995 * 120.00479 * 208.09843 * 15 14 13 17 17 C 1.39912 * 119.99437 * 28.09343 * 15 14 13 18 18 N 1.30870 * 119.99947 * 11.92352 * 17 15 14 19 19 Si 1.86801 * 119.99659 * 191.92283 * 17 15 14 20 20 H 1.48499 * 109.46928 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46737 * 120.00382 * 19 17 15 22 22 H 1.48495 * 109.47018 * 240.00190 * 19 17 15 23 23 C 1.40873 * 119.67088 * 0.52195 * 14 13 12 24 24 C 1.36375 * 119.83031 * 359.72994 * 23 14 13 25 25 H 1.09004 * 109.47525 * 305.13265 * 1 2 3 26 26 H 1.09007 * 109.47256 * 65.12699 * 1 2 3 27 27 H 1.08999 * 109.47345 * 185.13056 * 1 2 3 28 28 H 1.08994 * 109.47678 * 239.99940 * 2 1 3 29 29 H 1.08994 * 109.46701 * 304.81697 * 3 2 1 30 30 H 1.08997 * 109.47081 * 64.81968 * 3 2 1 31 31 H 1.09004 * 109.46364 * 184.81904 * 3 2 1 32 32 H 1.09005 * 109.46809 * 323.30161 * 4 2 1 33 33 H 1.08996 * 109.47154 * 203.29946 * 4 2 1 34 34 H 1.08998 * 109.47346 * 173.88871 * 6 5 4 35 35 H 1.09000 * 109.46822 * 293.88570 * 6 5 4 36 36 H 1.08999 * 109.47409 * 53.88335 * 6 5 4 37 37 H 1.08996 * 109.47482 * 310.22868 * 7 5 4 38 38 H 1.08998 * 109.46999 * 70.23890 * 7 5 4 39 39 H 1.09010 * 109.46861 * 190.23177 * 7 5 4 40 40 H 0.96999 * 119.99454 * 4.72029 * 10 8 5 41 41 H 1.08003 * 119.91090 * 0.02742 * 12 11 10 42 42 H 1.08003 * 120.08545 * 179.70874 * 13 12 11 43 43 H 0.96998 * 119.99468 * 179.97438 * 18 17 15 44 44 H 1.08002 * 120.08439 * 179.70636 * 23 14 13 45 45 H 1.07995 * 119.91839 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0512 -2.2303 0.9980 6 6 3.0066 -2.5485 -0.1539 7 6 0.6404 -2.6973 0.6343 8 6 2.5109 -2.9434 2.2435 9 8 2.8006 -2.3073 3.2346 10 7 2.6002 -4.2883 2.2559 11 6 2.9298 -4.9532 3.4340 12 6 3.8367 -4.3789 4.3247 13 6 4.1689 -5.0270 5.4776 14 6 3.5853 -6.2746 5.7732 15 6 3.9200 -6.9492 6.9671 16 1 3.8695 -8.0271 7.0107 17 6 4.3174 -6.2214 8.0940 18 7 4.1583 -4.9227 8.1237 19 14 5.0749 -7.1034 9.5561 20 1 5.1448 -8.5596 9.2737 21 1 6.4438 -6.5796 9.7952 22 1 4.2388 -6.8719 10.7613 23 6 2.6702 -6.8482 4.8688 24 6 2.3517 -6.1906 3.7173 25 1 -0.3634 0.5914 0.8405 26 1 -0.3634 0.4323 -0.9324 27 1 -0.3634 -1.0235 0.0919 28 1 1.8934 -0.5138 -0.8899 29 1 1.6078 1.9806 -0.8437 30 1 1.7488 1.9309 0.9300 31 1 3.1265 1.4437 -0.0863 32 1 1.3841 -0.4978 2.0909 33 1 3.0509 -0.3831 1.4767 34 1 3.0981 -3.6292 -0.2622 35 1 2.6159 -2.1225 -1.0780 36 1 3.9863 -2.1203 0.0578 37 1 -0.0697 -2.3130 1.3665 38 1 0.3785 -2.3251 -0.3561 39 1 0.6073 -3.7869 0.6334 40 1 2.4349 -4.7928 1.4441 41 1 4.2803 -3.4205 4.0985 42 1 4.8749 -4.5833 6.1640 43 1 4.4335 -4.4182 8.9051 44 1 2.2224 -7.8066 5.0865 45 1 1.6507 -6.6293 3.0228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084521195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:13 Heat of formation + Delta-G solvation = -34.810449 kcal Electronic energy + Delta-G solvation = -23111.597157 eV Core-core repulsion = 19900.076275 eV Total energy + Delta-G solvation = -3211.520882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.25469 -37.98928 -36.75615 -34.43504 -33.61009 -32.62089 -29.47096 -28.89240 -28.37826 -26.75800 -26.47055 -25.13542 -22.90665 -21.29914 -20.76370 -19.76953 -18.61795 -17.28713 -16.95135 -16.00157 -15.52444 -15.22714 -14.75034 -14.40106 -14.01077 -13.87178 -13.66957 -13.35951 -13.09832 -12.79205 -12.56845 -12.34460 -12.24941 -12.16857 -11.99142 -11.75220 -11.70830 -11.43751 -11.15126 -11.14288 -11.01465 -10.84965 -10.64809 -10.53381 -10.47777 -10.35053 -9.87297 -9.78257 -9.37949 -8.95173 -8.60753 -7.49416 -6.93814 -6.66662 -4.27840 2.63195 3.02706 3.09955 3.13326 3.15465 3.39979 3.76922 3.97145 4.60984 4.69049 4.76242 4.81245 4.98857 5.01794 5.06665 5.36943 5.46227 5.51215 5.54526 5.62061 5.69462 5.72276 5.73999 5.77958 5.90752 5.91103 5.98318 6.07248 6.15808 6.17141 6.25174 6.30638 6.43412 6.46763 6.85827 7.04157 7.08386 7.20600 7.33180 7.64141 7.72288 8.01796 8.09533 8.25677 8.36776 8.67523 8.84947 8.92723 9.05179 10.26412 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031515 B = 0.003262 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.239110 B = 8580.754682 C = 9062.872229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.091 4.091 5 C -0.079 4.079 6 C -0.142 4.142 7 C -0.145 4.145 8 C 0.507 3.493 9 O -0.527 6.527 10 N -0.652 5.652 11 C -0.003 4.003 12 C -0.088 4.088 13 C -0.152 4.152 14 C 0.105 3.895 15 C -0.460 4.460 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.796 5.796 19 Si 0.910 3.090 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.275 1.275 23 C -0.213 4.213 24 C -0.108 4.108 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.392 0.608 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.279 0.721 44 H 0.095 0.905 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 6.490 -15.608 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.129 4.129 5 C -0.083 4.083 6 C -0.199 4.199 7 C -0.203 4.203 8 C 0.293 3.707 9 O -0.403 6.403 10 N -0.295 5.295 11 C -0.095 4.095 12 C -0.108 4.108 13 C -0.172 4.172 14 C 0.102 3.898 15 C -0.490 4.490 16 H 0.095 0.905 17 C -0.145 4.145 18 N -0.422 5.422 19 Si 0.735 3.265 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.200 1.200 23 C -0.233 4.233 24 C -0.128 4.128 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.226 0.774 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.128 7.169 -14.732 16.896 hybrid contribution 0.132 -0.557 0.400 0.698 sum -3.996 6.613 -14.332 16.282 Atomic orbital electron populations 1.22403 0.95520 1.03508 1.01268 1.21219 0.95865 0.96044 0.98580 1.21851 1.00828 0.96150 1.01558 1.21514 1.02488 0.91412 0.97440 1.20779 0.96796 0.96735 0.93956 1.21936 0.99110 1.01791 0.97079 1.22186 0.94789 1.01214 1.02063 1.20471 0.78354 0.82516 0.89366 1.90694 1.48414 1.65903 1.35332 1.42987 1.68805 1.06207 1.11456 1.17240 1.05805 0.95903 0.90529 1.20571 0.96478 0.98790 0.95004 1.21061 1.02562 0.97409 0.96135 1.17687 0.88588 0.91823 0.91707 1.19562 1.39626 0.94714 0.95119 0.90482 1.25926 0.93562 0.94791 1.00260 1.69845 1.35350 1.07272 1.29685 0.86237 0.79252 0.80638 0.80409 1.18502 1.19794 1.20032 1.20586 1.03814 1.01594 0.97290 1.20062 0.99796 0.95254 0.97689 0.92880 0.93323 0.90479 0.90865 0.93027 0.92688 0.92790 0.91069 0.91280 0.92269 0.91398 0.91999 0.91701 0.90730 0.92436 0.77399 0.87612 0.86093 0.90960 0.88676 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 8.63 37.15 0.32 -1.17 16 2 C -0.10 -0.93 2.47 -90.62 -0.22 -1.15 16 3 C -0.15 -1.31 9.07 37.16 0.34 -0.97 16 4 C -0.09 -1.13 3.31 -26.73 -0.09 -1.22 16 5 C -0.08 -0.99 0.65 -155.66 -0.10 -1.09 16 6 C -0.14 -1.44 8.02 37.16 0.30 -1.14 16 7 C -0.15 -1.51 6.70 37.15 0.25 -1.26 16 8 C 0.51 9.04 6.31 -10.98 -0.07 8.97 16 9 O -0.53 -11.90 13.40 5.56 0.07 -11.83 16 10 N -0.65 -11.62 4.96 -9.73 -0.05 -11.67 16 11 C 0.00 -0.06 6.30 -83.57 -0.53 -0.58 16 12 C -0.09 -2.25 8.61 -39.79 -0.34 -2.59 16 13 C -0.15 -4.14 8.61 -39.26 -0.34 -4.47 16 14 C 0.10 2.84 5.56 -106.80 -0.59 2.25 16 15 C -0.46 -12.38 9.05 -37.85 -0.34 -12.73 16 16 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 17 C 0.07 1.84 5.23 -17.33 -0.09 1.75 16 18 N -0.80 -21.39 10.85 55.55 0.60 -20.79 16 19 Si 0.91 19.06 29.58 -169.99 -5.03 14.04 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C -0.21 -5.23 9.74 -39.26 -0.38 -5.61 16 24 C -0.11 -2.40 9.90 -39.79 -0.39 -2.79 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.65 3.77 -51.93 -0.20 0.46 16 28 H 0.07 0.63 5.81 -51.93 -0.30 0.32 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 33 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 34 H 0.06 0.56 7.30 -51.93 -0.38 0.18 16 35 H 0.07 0.54 6.32 -51.93 -0.33 0.21 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.73 7.44 -51.93 -0.39 0.34 16 38 H 0.07 0.60 5.96 -51.93 -0.31 0.30 16 39 H 0.06 0.58 7.41 -51.92 -0.38 0.19 16 40 H 0.39 5.53 7.52 -40.82 -0.31 5.22 16 41 H 0.11 2.71 6.23 -52.48 -0.33 2.39 16 42 H 0.12 3.43 6.20 -52.48 -0.33 3.10 16 43 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 44 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 45 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -30.52 349.14 -8.42 -38.94 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.99 Total: 9.84 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -2.29 Total: -23.79 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.55 Total: -32.46 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.52 -8.42 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084521195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.130 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds