Wall clock time and date at job start Tue Mar 31 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.46876 * 2 1 4 4 C 1.53000 * 109.47089 * 119.99622 * 2 1 3 5 5 C 1.52997 * 109.46888 * 83.29653 * 4 2 1 6 6 C 1.53002 * 109.47023 * 61.82698 * 5 4 2 7 7 C 1.52995 * 109.47240 * 301.82372 * 5 4 2 8 8 C 1.50700 * 109.46769 * 181.82156 * 5 4 2 9 9 O 1.21280 * 120.00446 * 0.02562 * 8 5 4 10 10 N 1.34789 * 119.99769 * 180.02562 * 8 5 4 11 11 C 1.39230 * 119.99617 * 184.72085 * 10 8 5 12 12 C 1.39486 * 119.83974 * 324.36800 * 11 10 8 13 13 C 1.36370 * 120.17019 * 180.30020 * 12 11 10 14 14 C 1.40869 * 119.82922 * 359.48005 * 13 12 11 15 15 C 1.41156 * 120.16795 * 180.24951 * 14 13 12 16 16 H 1.07995 * 120.00479 * 208.09843 * 15 14 13 17 17 C 1.39912 * 119.99437 * 28.09343 * 15 14 13 18 18 N 1.30870 * 119.99947 * 11.92352 * 17 15 14 19 19 Si 1.86801 * 119.99659 * 191.92283 * 17 15 14 20 20 H 1.48499 * 109.46928 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46737 * 120.00382 * 19 17 15 22 22 H 1.48495 * 109.47018 * 240.00190 * 19 17 15 23 23 C 1.40873 * 119.67088 * 0.52195 * 14 13 12 24 24 C 1.36375 * 119.83031 * 359.72994 * 23 14 13 25 25 H 1.09004 * 109.47525 * 305.13265 * 1 2 3 26 26 H 1.09007 * 109.47256 * 65.12699 * 1 2 3 27 27 H 1.08999 * 109.47345 * 185.13056 * 1 2 3 28 28 H 1.08994 * 109.47678 * 239.99940 * 2 1 3 29 29 H 1.08994 * 109.46701 * 304.81697 * 3 2 1 30 30 H 1.08997 * 109.47081 * 64.81968 * 3 2 1 31 31 H 1.09004 * 109.46364 * 184.81904 * 3 2 1 32 32 H 1.09005 * 109.46809 * 323.30161 * 4 2 1 33 33 H 1.08996 * 109.47154 * 203.29946 * 4 2 1 34 34 H 1.08998 * 109.47346 * 173.88871 * 6 5 4 35 35 H 1.09000 * 109.46822 * 293.88570 * 6 5 4 36 36 H 1.08999 * 109.47409 * 53.88335 * 6 5 4 37 37 H 1.08996 * 109.47482 * 310.22868 * 7 5 4 38 38 H 1.08998 * 109.46999 * 70.23890 * 7 5 4 39 39 H 1.09010 * 109.46861 * 190.23177 * 7 5 4 40 40 H 0.96999 * 119.99454 * 4.72029 * 10 8 5 41 41 H 1.08003 * 119.91090 * 0.02742 * 12 11 10 42 42 H 1.08003 * 120.08545 * 179.70874 * 13 12 11 43 43 H 0.96998 * 119.99468 * 179.97438 * 18 17 15 44 44 H 1.08002 * 120.08439 * 179.70636 * 23 14 13 45 45 H 1.07995 * 119.91839 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0512 -2.2303 0.9980 6 6 3.0066 -2.5485 -0.1539 7 6 0.6404 -2.6973 0.6343 8 6 2.5109 -2.9434 2.2435 9 8 2.8006 -2.3073 3.2346 10 7 2.6002 -4.2883 2.2559 11 6 2.9298 -4.9532 3.4340 12 6 3.8367 -4.3789 4.3247 13 6 4.1689 -5.0270 5.4776 14 6 3.5853 -6.2746 5.7732 15 6 3.9200 -6.9492 6.9671 16 1 3.8695 -8.0271 7.0107 17 6 4.3174 -6.2214 8.0940 18 7 4.1583 -4.9227 8.1237 19 14 5.0749 -7.1034 9.5561 20 1 5.1448 -8.5596 9.2737 21 1 6.4438 -6.5796 9.7952 22 1 4.2388 -6.8719 10.7613 23 6 2.6702 -6.8482 4.8688 24 6 2.3517 -6.1906 3.7173 25 1 -0.3634 0.5914 0.8405 26 1 -0.3634 0.4323 -0.9324 27 1 -0.3634 -1.0235 0.0919 28 1 1.8934 -0.5138 -0.8899 29 1 1.6078 1.9806 -0.8437 30 1 1.7488 1.9309 0.9300 31 1 3.1265 1.4437 -0.0863 32 1 1.3841 -0.4978 2.0909 33 1 3.0509 -0.3831 1.4767 34 1 3.0981 -3.6292 -0.2622 35 1 2.6159 -2.1225 -1.0780 36 1 3.9863 -2.1203 0.0578 37 1 -0.0697 -2.3130 1.3665 38 1 0.3785 -2.3251 -0.3561 39 1 0.6073 -3.7869 0.6334 40 1 2.4349 -4.7928 1.4441 41 1 4.2803 -3.4205 4.0985 42 1 4.8749 -4.5833 6.1640 43 1 4.4335 -4.4182 8.9051 44 1 2.2224 -7.8066 5.0865 45 1 1.6507 -6.6293 3.0228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084521195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:12 Heat of formation + Delta-G solvation = -51.533003 kcal Electronic energy + Delta-G solvation = -23112.322301 eV Core-core repulsion = 19900.076275 eV Total energy + Delta-G solvation = -3212.246026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65260 -39.53293 -38.17738 -36.20178 -34.96915 -34.03844 -31.43326 -30.75923 -29.15186 -27.65658 -27.32790 -26.87379 -24.32640 -23.17622 -22.36127 -20.96006 -19.89489 -19.24250 -18.40766 -17.47872 -17.06552 -16.53620 -16.08925 -15.73119 -15.52312 -15.19605 -14.76388 -14.67036 -14.38322 -14.16683 -13.98711 -13.74525 -13.58752 -13.36951 -13.21888 -12.96920 -12.93434 -12.82494 -12.66742 -12.52391 -12.32371 -12.03545 -11.83140 -11.74345 -11.66869 -11.53413 -11.36097 -11.20948 -11.17529 -10.64437 -10.31401 -9.46619 -8.84037 -8.58707 -6.29875 0.81259 1.12510 1.37246 1.43358 1.53572 1.82935 2.20655 2.36140 2.77706 3.64405 3.70073 3.74614 3.88853 4.15712 4.19235 4.23053 4.40323 4.44277 4.49346 4.71135 4.74417 4.78818 4.84269 4.91455 4.94336 4.97656 4.99722 5.10223 5.11383 5.13085 5.16227 5.18648 5.30004 5.30577 5.37157 5.39568 5.44000 5.53279 5.63772 5.68365 5.87108 6.08559 6.11256 6.33775 6.68131 6.75606 6.92752 7.00557 7.45297 8.36629 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031515 B = 0.003262 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.239110 B = 8580.754682 C = 9062.872229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.089 4.089 5 C -0.068 4.068 6 C -0.140 4.140 7 C -0.144 4.144 8 C 0.500 3.500 9 O -0.581 6.581 10 N -0.642 5.642 11 C 0.010 3.990 12 C -0.104 4.104 13 C -0.176 4.176 14 C 0.072 3.928 15 C -0.494 4.494 16 H 0.082 0.918 17 C 0.026 3.974 18 N -0.837 5.837 19 Si 0.988 3.012 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.267 1.267 23 C -0.219 4.219 24 C -0.101 4.101 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.416 0.584 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.285 0.715 44 H 0.112 0.888 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 5.533 -18.424 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.127 4.127 5 C -0.071 4.071 6 C -0.198 4.198 7 C -0.201 4.201 8 C 0.290 3.710 9 O -0.461 6.461 10 N -0.287 5.287 11 C -0.083 4.083 12 C -0.125 4.125 13 C -0.196 4.196 14 C 0.069 3.931 15 C -0.524 4.524 16 H 0.100 0.900 17 C -0.187 4.187 18 N -0.464 5.464 19 Si 0.809 3.191 20 H -0.176 1.176 21 H -0.192 1.192 22 H -0.192 1.192 23 C -0.239 4.239 24 C -0.121 4.121 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.254 0.746 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.130 0.870 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.490 6.199 -17.610 19.459 hybrid contribution 0.499 -0.164 1.151 1.265 sum -4.991 6.035 -16.459 18.227 Atomic orbital electron populations 1.22403 0.94682 1.03817 1.01758 1.21194 0.96456 0.95952 0.97296 1.21867 1.00902 0.96071 1.01702 1.21500 1.00806 0.92086 0.98357 1.20797 0.98820 0.95687 0.91817 1.21985 0.97915 1.02836 0.97016 1.22244 0.92485 1.01897 1.03477 1.21622 0.76660 0.82215 0.90552 1.90682 1.50503 1.66948 1.37944 1.42912 1.68368 1.06503 1.10872 1.17332 1.03782 0.95938 0.91259 1.20591 0.97785 0.98472 0.95611 1.20938 1.03459 0.98445 0.96795 1.18027 0.89896 0.92179 0.92991 1.19846 1.41523 0.95085 0.95909 0.90009 1.26880 0.93333 0.95374 1.03160 1.69943 1.36539 1.09009 1.30909 0.85072 0.78239 0.79513 0.76313 1.17567 1.19237 1.19230 1.20880 1.03111 1.02327 0.97603 1.20432 0.99594 0.94533 0.97561 0.94112 0.91461 0.89966 0.88818 0.91225 0.93930 0.92933 0.93770 0.93423 0.91064 0.88098 0.93191 0.92905 0.87410 0.91474 0.74645 0.88938 0.88614 0.90496 0.87014 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 8.63 71.98 0.62 -1.87 16 2 C -0.09 -1.50 2.47 -10.79 -0.03 -1.52 16 3 C -0.15 -2.42 9.07 71.99 0.65 -1.77 16 4 C -0.09 -2.19 3.31 30.59 0.10 -2.09 16 5 C -0.07 -1.57 0.65 -52.93 -0.03 -1.60 16 6 C -0.14 -2.38 8.02 71.98 0.58 -1.80 16 7 C -0.14 -2.50 6.70 71.98 0.48 -2.02 16 8 C 0.50 17.72 6.31 87.66 0.55 18.28 16 9 O -0.58 -27.37 13.40 -3.03 -0.04 -27.41 16 10 N -0.64 -21.88 4.96 -303.09 -1.50 -23.38 16 11 C 0.01 0.47 6.30 38.57 0.24 0.71 16 12 C -0.10 -5.54 8.61 22.13 0.19 -5.35 16 13 C -0.18 -10.16 8.61 22.48 0.19 -9.97 16 14 C 0.07 4.02 5.56 -21.27 -0.12 3.90 16 15 C -0.49 -27.40 9.05 23.39 0.21 -27.19 16 16 H 0.08 4.28 7.87 -2.91 -0.02 4.26 16 17 C 0.03 1.35 5.23 85.24 0.45 1.80 16 18 N -0.84 -47.23 10.85 21.82 0.24 -46.99 16 19 Si 0.99 39.89 29.58 68.60 2.03 41.92 16 20 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 23 C -0.22 -10.69 9.74 22.48 0.22 -10.47 16 24 C -0.10 -4.31 9.90 22.14 0.22 -4.09 16 25 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.08 1.11 3.77 -2.39 -0.01 1.11 16 28 H 0.09 1.19 5.81 -2.39 -0.01 1.18 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 1.30 7.85 -2.38 -0.02 1.28 16 33 H 0.05 1.35 7.93 -2.39 -0.02 1.33 16 34 H 0.07 1.06 7.30 -2.39 -0.02 1.04 16 35 H 0.10 1.09 6.32 -2.39 -0.02 1.08 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.05 1.07 7.44 -2.39 -0.02 1.05 16 38 H 0.11 1.20 5.96 -2.39 -0.01 1.19 16 39 H 0.07 1.06 7.41 -2.38 -0.02 1.04 16 40 H 0.42 10.30 7.52 -92.71 -0.70 9.61 16 41 H 0.09 5.07 6.23 -2.91 -0.02 5.05 16 42 H 0.10 5.88 6.20 -2.91 -0.02 5.86 16 43 H 0.28 14.62 8.30 -92.71 -0.77 13.85 16 44 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 45 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -71.71 349.14 5.54 -66.17 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.29 Total: 34.77 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 4.53 Total: -45.08 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -1.27 Total: -70.38 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.04 Total: -27.41 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -71.71 5.54 -66.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084521195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.639 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds