Wall clock time and date at job start Tue Mar 31 2020 06:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99939 * 2 1 4 4 C 1.53005 * 109.47116 * 174.97532 * 3 2 1 5 5 N 1.46903 * 109.46712 * 67.11619 * 4 3 2 6 6 C 1.46896 * 110.99997 * 286.60749 * 5 4 3 7 7 C 1.50697 * 109.47626 * 300.89301 * 6 5 4 8 8 H 1.08007 * 119.99837 * 4.36432 * 7 6 5 9 9 C 1.37870 * 120.00638 * 184.36305 * 7 6 5 10 10 N 1.31521 * 119.99593 * 5.10450 * 9 7 6 11 11 Si 1.86795 * 120.00433 * 185.10144 * 9 7 6 12 12 H 1.48507 * 109.47015 * 5.00391 * 11 9 7 13 13 H 1.48497 * 109.47251 * 125.00485 * 11 9 7 14 14 H 1.48503 * 109.47436 * 245.00689 * 11 9 7 15 15 C 1.46903 * 110.99800 * 162.65599 * 5 4 3 16 16 C 1.50701 * 109.47126 * 199.84432 * 15 5 4 17 17 C 1.50700 * 119.99848 * 274.60687 * 16 15 5 18 18 C 1.32569 * 119.99867 * 94.32648 * 16 15 5 19 19 C 1.47813 * 119.99520 * 171.74935 * 18 16 15 20 20 C 1.39533 * 120.14465 * 319.44162 * 19 18 16 21 21 C 1.37970 * 119.85952 * 179.72225 * 20 19 18 22 22 C 1.38352 * 120.13938 * 0.53701 * 21 20 19 23 23 C 1.38341 * 120.28114 * 359.76434 * 22 21 20 24 24 C 1.37968 * 120.15055 * 359.95569 * 23 22 21 25 25 H 1.09003 * 109.47327 * 184.91465 * 1 2 3 26 26 H 1.08998 * 109.47460 * 304.91582 * 1 2 3 27 27 H 1.09002 * 109.47173 * 64.91553 * 1 2 3 28 28 H 1.09002 * 109.46938 * 54.98425 * 3 2 1 29 29 H 1.08997 * 109.47322 * 294.97546 * 3 2 1 30 30 H 1.09000 * 109.47253 * 307.12220 * 4 3 2 31 31 H 1.08998 * 109.47286 * 187.11801 * 4 3 2 32 32 H 1.08999 * 109.47416 * 60.89837 * 6 5 4 33 33 H 1.09008 * 109.47003 * 180.89312 * 6 5 4 34 34 H 0.97003 * 119.99493 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.47320 * 79.83991 * 15 5 4 36 36 H 1.09003 * 109.47247 * 319.84333 * 15 5 4 37 37 H 1.09005 * 109.46568 * 264.73976 * 17 16 15 38 38 H 1.08997 * 109.47406 * 24.73833 * 17 16 15 39 39 H 1.08999 * 109.47089 * 144.74727 * 17 16 15 40 40 H 1.07992 * 120.00227 * 351.75204 * 18 16 15 41 41 H 1.08009 * 120.06797 * 359.97438 * 20 19 18 42 42 H 1.08001 * 119.93425 * 180.28090 * 21 20 19 43 43 H 1.07997 * 119.85558 * 179.73884 * 22 21 20 44 44 H 1.08001 * 119.92444 * 179.97438 * 23 22 21 45 45 H 1.07992 * 120.07812 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5304 1.1869 0.1263 5 7 4.0758 0.5669 -1.0886 6 6 3.7717 -0.8697 -1.1285 7 6 4.3610 -1.5419 0.0847 8 1 4.8455 -0.9506 0.8477 9 6 4.2816 -2.9115 0.2208 10 7 3.7822 -3.6412 -0.7528 11 14 4.8834 -3.7309 1.7879 12 1 5.2836 -2.6900 2.7685 13 1 3.7938 -4.5599 2.3629 14 1 6.0513 -4.5943 1.4781 15 6 5.5219 0.8021 -1.1960 16 6 5.9585 0.6028 -2.6245 17 6 6.3009 -0.7779 -3.1221 18 6 6.0361 1.6413 -3.4449 19 6 6.6353 1.4800 -4.7865 20 6 7.7771 0.6958 -4.9543 21 6 8.3282 0.5446 -6.2101 22 6 7.7575 1.1776 -7.3000 23 6 6.6290 1.9616 -7.1392 24 6 6.0648 2.1162 -5.8897 25 1 -0.3634 -1.0239 0.0880 26 1 -0.3634 0.5882 0.8426 27 1 -0.3633 0.4357 -0.9307 28 1 1.6193 1.8772 0.8417 29 1 1.7616 1.8139 -0.9315 30 1 3.7762 0.5700 0.9907 31 1 3.9629 2.1793 0.2534 32 1 2.6911 -1.0124 -1.1340 33 1 4.2005 -1.3069 -2.0303 34 1 3.7260 -4.6048 -0.6569 35 1 6.0529 0.1006 -0.5525 36 1 5.7481 1.8223 -0.8859 37 1 7.3772 -0.9338 -3.0491 38 1 5.7840 -1.5213 -2.5154 39 1 5.9892 -0.8770 -4.1619 40 1 5.6616 2.6050 -3.1331 41 1 8.2262 0.2048 -4.1035 42 1 9.2093 -0.0658 -6.3421 43 1 8.1951 1.0595 -8.2802 44 1 6.1885 2.4534 -7.9939 45 1 5.1837 2.7281 -5.7656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:45 Heat of formation + Delta-G solvation = 3.023132 kcal Electronic energy + Delta-G solvation = -23211.111933 eV Core-core repulsion = 20001.231638 eV Total energy + Delta-G solvation = -3209.880295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.13091 -37.87841 -36.51899 -34.42393 -32.32602 -30.88928 -30.46393 -28.81468 -27.46733 -26.26677 -25.67230 -24.28777 -22.55328 -22.19635 -21.49314 -19.78999 -17.97150 -16.46800 -16.31155 -15.89269 -15.55868 -15.18582 -14.87731 -14.61807 -14.16789 -14.00295 -13.82091 -13.66022 -13.33283 -13.09085 -12.49816 -12.34338 -12.21965 -11.81812 -11.60319 -11.39750 -11.38138 -10.98719 -10.92720 -10.79906 -10.73293 -10.63313 -10.54041 -10.24540 -9.86223 -9.65611 -9.42144 -9.17677 -8.91593 -8.74871 -8.22061 -7.71224 -7.08005 -5.89881 -3.93675 1.32789 1.58815 2.78601 3.32011 3.40515 3.43073 4.06070 4.49149 4.51040 5.01485 5.07487 5.10004 5.20498 5.30083 5.42084 5.54753 5.63157 5.63831 5.71026 5.77764 5.82325 5.89249 5.93837 6.04720 6.11421 6.13799 6.15617 6.24401 6.28070 6.34599 6.43521 6.54162 6.62215 6.66530 6.77911 6.81263 6.83516 7.11164 7.23043 7.37964 7.57492 7.76630 7.89336 8.15097 8.18504 8.42336 8.48192 9.15046 9.68958 11.15872 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014686 B = 0.004514 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.110605 B = 6200.956381 C = 7383.700629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.072 3.928 4 C 0.054 3.946 5 N -0.533 5.533 6 C 0.173 3.827 7 C -0.532 4.532 8 H 0.051 0.949 9 C 0.067 3.933 10 N -0.890 5.890 11 Si 0.880 3.120 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.286 1.286 15 C 0.084 3.916 16 C -0.049 4.049 17 C -0.133 4.133 18 C -0.164 4.164 19 C -0.027 4.027 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.118 4.118 25 H 0.079 0.921 26 H 0.028 0.972 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.258 0.742 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 10.992 -6.750 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C -0.005 4.005 4 C -0.074 4.074 5 N -0.256 5.256 6 C 0.048 3.952 7 C -0.571 4.571 8 H 0.070 0.930 9 C -0.134 4.134 10 N -0.530 5.530 11 Si 0.709 3.291 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.213 1.213 15 C -0.043 4.043 16 C -0.049 4.049 17 C -0.189 4.189 18 C -0.183 4.183 19 C -0.027 4.027 20 C -0.134 4.134 21 C -0.140 4.140 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.136 4.136 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.763 10.855 -7.193 13.312 hybrid contribution 0.377 -0.737 1.586 1.789 sum 3.140 10.118 -5.608 11.987 Atomic orbital electron populations 1.22655 0.83518 1.02007 0.98565 1.88346 1.17378 1.26564 1.94808 1.22474 0.94348 0.85132 0.98535 1.22055 0.92527 0.98072 0.94784 1.62701 1.09748 1.18194 1.35002 1.20205 0.98773 0.79984 0.96256 1.21655 1.36759 0.92144 1.06523 0.93049 1.24843 0.95459 0.97402 0.95742 1.69959 1.46218 1.05482 1.31304 0.86743 0.78318 0.79578 0.84504 1.20102 1.21180 1.21266 1.21087 0.91178 0.99511 0.92573 1.22120 0.93291 0.94584 0.94917 1.21280 1.00775 0.95346 1.01534 1.21268 1.05321 0.99339 0.92380 1.19127 0.94277 0.95669 0.93626 1.21500 0.95868 0.98578 0.97444 1.21056 1.00062 0.99956 0.92923 1.21084 0.97021 0.98714 0.98494 1.21018 0.96510 0.99437 0.97112 1.21272 0.99756 1.00363 0.92233 0.90255 0.95302 0.95028 0.94628 0.93703 0.92344 0.92056 0.92392 0.94335 0.93211 0.92234 0.92654 0.92278 0.88672 0.92262 0.86687 0.85569 0.86453 0.86721 0.86558 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.35 -7.29 7.76 -35.23 -0.27 -7.57 16 3 C 0.07 1.28 6.24 37.16 0.23 1.51 16 4 C 0.05 1.03 5.35 -3.82 -0.02 1.01 16 5 N -0.53 -11.15 4.57 -237.51 -1.09 -12.24 16 6 C 0.17 4.35 4.44 -4.98 -0.02 4.33 16 7 C -0.53 -14.28 7.18 -34.44 -0.25 -14.53 16 8 H 0.05 1.38 6.08 -52.48 -0.32 1.06 16 9 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 10 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 11 Si 0.88 21.53 29.54 -169.99 -5.02 16.51 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 15 C 0.08 1.60 5.03 -4.97 -0.03 1.57 16 16 C -0.05 -0.86 5.25 -101.26 -0.53 -1.40 16 17 C -0.13 -2.46 7.82 36.01 0.28 -2.18 16 18 C -0.16 -2.63 9.35 -37.57 -0.35 -2.98 16 19 C -0.03 -0.40 5.00 -105.01 -0.53 -0.93 16 20 C -0.12 -1.64 7.95 -39.20 -0.31 -1.95 16 21 C -0.12 -1.53 10.03 -39.64 -0.40 -1.92 16 22 C -0.14 -1.60 10.04 -39.50 -0.40 -1.99 16 23 C -0.12 -1.49 10.03 -39.64 -0.40 -1.89 16 24 C -0.12 -1.61 9.79 -39.19 -0.38 -2.00 16 25 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.54 8.12 -51.93 -0.42 0.11 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.26 6.00 -51.93 -0.31 0.94 16 31 H 0.06 0.98 7.65 -51.93 -0.40 0.58 16 32 H 0.06 1.61 5.47 -51.93 -0.28 1.33 16 33 H 0.04 1.04 5.07 -51.92 -0.26 0.78 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 35 H 0.06 1.26 6.58 -51.93 -0.34 0.91 16 36 H 0.06 0.92 7.52 -51.93 -0.39 0.53 16 37 H 0.06 0.96 6.49 -51.93 -0.34 0.63 16 38 H 0.09 2.12 5.71 -51.93 -0.30 1.82 16 39 H 0.06 1.08 6.93 -51.93 -0.36 0.72 16 40 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.13 1.74 5.85 -52.48 -0.31 1.43 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -29.91 355.06 -9.34 -39.25 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.97 Total: 3.95 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -2.08 Total: -19.99 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.35 Total: -37.50 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.27 Total: -7.57 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.91 -9.34 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.274 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds