Wall clock time and date at job start Tue Mar 31 2020 06:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99939 * 2 1 4 4 C 1.53005 * 109.47116 * 174.97532 * 3 2 1 5 5 N 1.46903 * 109.46712 * 67.11619 * 4 3 2 6 6 C 1.46896 * 110.99997 * 286.60749 * 5 4 3 7 7 C 1.50697 * 109.47626 * 300.89301 * 6 5 4 8 8 H 1.08007 * 119.99837 * 4.36432 * 7 6 5 9 9 C 1.37870 * 120.00638 * 184.36305 * 7 6 5 10 10 N 1.31521 * 119.99593 * 5.10450 * 9 7 6 11 11 Si 1.86795 * 120.00433 * 185.10144 * 9 7 6 12 12 H 1.48507 * 109.47015 * 5.00391 * 11 9 7 13 13 H 1.48497 * 109.47251 * 125.00485 * 11 9 7 14 14 H 1.48503 * 109.47436 * 245.00689 * 11 9 7 15 15 C 1.46903 * 110.99800 * 162.65599 * 5 4 3 16 16 C 1.50701 * 109.47126 * 199.84432 * 15 5 4 17 17 C 1.50700 * 119.99848 * 274.60687 * 16 15 5 18 18 C 1.32569 * 119.99867 * 94.32648 * 16 15 5 19 19 C 1.47813 * 119.99520 * 171.74935 * 18 16 15 20 20 C 1.39533 * 120.14465 * 319.44162 * 19 18 16 21 21 C 1.37970 * 119.85952 * 179.72225 * 20 19 18 22 22 C 1.38352 * 120.13938 * 0.53701 * 21 20 19 23 23 C 1.38341 * 120.28114 * 359.76434 * 22 21 20 24 24 C 1.37968 * 120.15055 * 359.95569 * 23 22 21 25 25 H 1.09003 * 109.47327 * 184.91465 * 1 2 3 26 26 H 1.08998 * 109.47460 * 304.91582 * 1 2 3 27 27 H 1.09002 * 109.47173 * 64.91553 * 1 2 3 28 28 H 1.09002 * 109.46938 * 54.98425 * 3 2 1 29 29 H 1.08997 * 109.47322 * 294.97546 * 3 2 1 30 30 H 1.09000 * 109.47253 * 307.12220 * 4 3 2 31 31 H 1.08998 * 109.47286 * 187.11801 * 4 3 2 32 32 H 1.08999 * 109.47416 * 60.89837 * 6 5 4 33 33 H 1.09008 * 109.47003 * 180.89312 * 6 5 4 34 34 H 0.97003 * 119.99493 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.47320 * 79.83991 * 15 5 4 36 36 H 1.09003 * 109.47247 * 319.84333 * 15 5 4 37 37 H 1.09005 * 109.46568 * 264.73976 * 17 16 15 38 38 H 1.08997 * 109.47406 * 24.73833 * 17 16 15 39 39 H 1.08999 * 109.47089 * 144.74727 * 17 16 15 40 40 H 1.07992 * 120.00227 * 351.75204 * 18 16 15 41 41 H 1.08009 * 120.06797 * 359.97438 * 20 19 18 42 42 H 1.08001 * 119.93425 * 180.28090 * 21 20 19 43 43 H 1.07997 * 119.85558 * 179.73884 * 22 21 20 44 44 H 1.08001 * 119.92444 * 179.97438 * 23 22 21 45 45 H 1.07992 * 120.07812 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5304 1.1869 0.1263 5 7 4.0758 0.5669 -1.0886 6 6 3.7717 -0.8697 -1.1285 7 6 4.3610 -1.5419 0.0847 8 1 4.8455 -0.9506 0.8477 9 6 4.2816 -2.9115 0.2208 10 7 3.7822 -3.6412 -0.7528 11 14 4.8834 -3.7309 1.7879 12 1 5.2836 -2.6900 2.7685 13 1 3.7938 -4.5599 2.3629 14 1 6.0513 -4.5943 1.4781 15 6 5.5219 0.8021 -1.1960 16 6 5.9585 0.6028 -2.6245 17 6 6.3009 -0.7779 -3.1221 18 6 6.0361 1.6413 -3.4449 19 6 6.6353 1.4800 -4.7865 20 6 7.7771 0.6958 -4.9543 21 6 8.3282 0.5446 -6.2101 22 6 7.7575 1.1776 -7.3000 23 6 6.6290 1.9616 -7.1392 24 6 6.0648 2.1162 -5.8897 25 1 -0.3634 -1.0239 0.0880 26 1 -0.3634 0.5882 0.8426 27 1 -0.3633 0.4357 -0.9307 28 1 1.6193 1.8772 0.8417 29 1 1.7616 1.8139 -0.9315 30 1 3.7762 0.5700 0.9907 31 1 3.9629 2.1793 0.2534 32 1 2.6911 -1.0124 -1.1340 33 1 4.2005 -1.3069 -2.0303 34 1 3.7260 -4.6048 -0.6569 35 1 6.0529 0.1006 -0.5525 36 1 5.7481 1.8223 -0.8859 37 1 7.3772 -0.9338 -3.0491 38 1 5.7840 -1.5213 -2.5154 39 1 5.9892 -0.8770 -4.1619 40 1 5.6616 2.6050 -3.1331 41 1 8.2262 0.2048 -4.1035 42 1 9.2093 -0.0658 -6.3421 43 1 8.1951 1.0595 -8.2802 44 1 6.1885 2.4534 -7.9939 45 1 5.1837 2.7281 -5.7656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:44 Heat of formation + Delta-G solvation = -13.875555 kcal Electronic energy + Delta-G solvation = -23211.844715 eV Core-core repulsion = 20001.231638 eV Total energy + Delta-G solvation = -3210.613077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.23033 -39.37115 -37.96767 -35.84571 -34.37646 -31.94057 -31.61395 -30.32169 -29.16724 -27.76537 -27.00732 -25.99580 -24.17799 -23.22250 -22.63111 -21.47398 -19.29722 -18.42278 -17.44559 -17.30257 -17.07033 -16.61562 -16.27697 -15.96938 -15.65916 -15.57597 -15.21698 -14.95806 -14.48329 -14.39261 -14.28254 -13.68288 -13.44828 -13.26384 -13.08908 -12.97704 -12.80480 -12.70135 -12.60951 -12.33756 -12.17178 -12.03531 -11.91075 -11.77432 -11.61755 -11.41579 -11.24645 -10.52358 -10.38692 -10.14333 -9.74444 -8.98620 -8.81516 -8.00736 -6.12823 0.23936 0.59539 1.35893 1.38345 1.47814 1.53769 2.44484 3.03031 3.15546 3.26713 3.57968 3.92530 4.09132 4.17736 4.21589 4.32387 4.34154 4.41335 4.48961 4.54517 4.61027 4.62327 4.69109 4.73632 4.77131 4.81381 4.89491 4.91307 4.97587 5.00649 5.17835 5.21897 5.23947 5.28168 5.54511 5.56586 5.63427 5.68714 5.71728 5.87354 6.05464 6.13400 6.21507 6.26828 6.41557 6.54359 6.73515 7.07571 7.53069 9.02085 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014686 B = 0.004514 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.110605 B = 6200.956381 C = 7383.700629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.072 3.928 4 C 0.051 3.949 5 N -0.532 5.532 6 C 0.192 3.808 7 C -0.527 4.527 8 H 0.048 0.952 9 C 0.015 3.985 10 N -0.926 5.926 11 Si 0.941 3.059 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.282 1.282 15 C 0.090 3.910 16 C -0.082 4.082 17 C -0.116 4.116 18 C -0.133 4.133 19 C -0.057 4.057 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.127 4.127 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.097 0.903 32 H 0.032 0.968 33 H 0.014 0.986 34 H 0.258 0.742 35 H 0.031 0.969 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 12.989 -7.519 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.004 4.004 4 C -0.077 4.077 5 N -0.255 5.255 6 C 0.066 3.934 7 C -0.566 4.566 8 H 0.066 0.934 9 C -0.183 4.183 10 N -0.567 5.567 11 Si 0.768 3.232 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.208 1.208 15 C -0.037 4.037 16 C -0.083 4.083 17 C -0.172 4.172 18 C -0.152 4.152 19 C -0.057 4.057 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.143 4.143 24 C -0.145 4.145 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.115 0.885 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.357 12.874 -7.952 15.500 hybrid contribution 0.220 -1.244 1.692 2.112 sum 3.578 11.630 -6.260 13.684 Atomic orbital electron populations 1.22782 0.81473 1.02343 1.00353 1.88269 1.19873 1.28553 1.95163 1.22570 0.93250 0.84455 1.00156 1.22205 0.93990 0.98977 0.92542 1.62637 1.11282 1.15408 1.36167 1.19770 0.96633 0.82515 0.94526 1.21870 1.35740 0.92284 1.06705 0.93427 1.25575 0.96022 0.98211 0.98521 1.70085 1.47894 1.05597 1.33115 0.85776 0.77793 0.78601 0.81054 1.19448 1.21078 1.20783 1.21066 0.89471 1.00152 0.93051 1.21918 0.96641 0.94667 0.95061 1.21037 1.01048 0.94885 1.00211 1.21439 1.02426 0.98979 0.92386 1.19204 0.95410 0.97529 0.93579 1.21584 0.96090 0.98662 0.98280 1.21365 1.00739 1.00139 0.92480 1.21501 0.96497 0.97365 0.99546 1.21380 0.96442 0.99183 0.97343 1.21483 1.00175 1.00258 0.92557 0.90930 0.92687 0.93752 0.91553 0.93001 0.95268 0.88500 0.95031 0.96798 0.93306 0.95113 0.89860 0.90922 0.93190 0.92609 0.85431 0.86037 0.84403 0.83811 0.83843 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -16.62 7.76 -148.98 -1.16 -17.77 16 3 C 0.07 2.46 6.24 71.98 0.45 2.91 16 4 C 0.05 1.90 5.35 86.30 0.46 2.36 16 5 N -0.53 -22.54 4.57 -905.35 -4.14 -26.68 16 6 C 0.19 10.08 4.44 85.56 0.38 10.46 16 7 C -0.53 -29.32 7.18 25.60 0.18 -29.14 16 8 H 0.05 2.64 6.08 -2.91 -0.02 2.62 16 9 C 0.01 0.85 5.45 84.65 0.46 1.31 16 10 N -0.93 -56.19 13.29 21.45 0.29 -55.90 16 11 Si 0.94 45.26 29.54 68.60 2.03 47.29 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 15 C 0.09 3.45 5.03 85.56 0.43 3.88 16 16 C -0.08 -2.97 5.25 -17.60 -0.09 -3.07 16 17 C -0.12 -4.46 7.82 71.24 0.56 -3.91 16 18 C -0.13 -4.16 9.35 23.65 0.22 -3.93 16 19 C -0.06 -1.66 5.00 -20.12 -0.10 -1.76 16 20 C -0.13 -3.51 7.95 22.52 0.18 -3.33 16 21 C -0.13 -2.97 10.03 22.23 0.22 -2.75 16 22 C -0.13 -2.69 10.04 22.32 0.22 -2.47 16 23 C -0.13 -2.68 10.03 22.23 0.22 -2.45 16 24 C -0.13 -3.21 9.79 22.52 0.22 -2.99 16 25 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.05 1.40 8.12 -2.39 -0.02 1.38 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.03 1.26 6.00 -2.39 -0.01 1.25 16 31 H 0.10 2.87 7.65 -2.39 -0.02 2.86 16 32 H 0.03 1.85 5.47 -2.39 -0.01 1.83 16 33 H 0.01 0.81 5.07 -2.38 -0.01 0.80 16 34 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 35 H 0.03 1.34 6.58 -2.39 -0.02 1.33 16 36 H 0.08 2.67 7.52 -2.39 -0.02 2.65 16 37 H 0.07 2.47 6.49 -2.38 -0.02 2.46 16 38 H 0.05 2.38 5.71 -2.39 -0.01 2.36 16 39 H 0.06 2.12 6.93 -2.39 -0.02 2.10 16 40 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 41 H 0.12 3.34 5.85 -2.91 -0.02 3.32 16 42 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 44 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -67.09 355.06 3.25 -63.85 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.96 Total: 21.99 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 5.27 Total: -32.77 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -3.86 Total: -82.58 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.16 Total: -17.77 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.09 3.25 -63.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.970 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds