Wall clock time and date at job start Tue Mar 31 2020 05:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47172 * 2 1 4 4 C 1.53004 * 109.47410 * 239.99868 * 2 1 3 5 5 C 1.52998 * 109.47107 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46895 * 60.00441 * 5 4 2 7 7 C 1.52995 * 109.47049 * 299.99778 * 6 5 4 8 8 C 1.52992 * 109.47519 * 60.00115 * 7 6 5 9 9 H 1.08997 * 109.47013 * 59.99535 * 8 7 6 10 10 N 1.46499 * 109.47617 * 179.97438 * 8 7 6 11 11 C 1.39784 * 120.00081 * 275.00532 * 10 8 7 12 12 C 1.38947 * 120.00846 * 179.97438 * 11 10 8 13 13 C 1.38004 * 119.99367 * 180.02562 * 12 11 10 14 14 C 1.38899 * 120.00693 * 0.02562 * 13 12 11 15 15 O 1.35804 * 119.99027 * 179.97438 * 14 13 12 16 16 C 1.34807 * 117.00318 * 354.46051 * 15 14 13 17 17 H 1.08001 * 120.00088 * 5.06168 * 16 15 14 18 18 C 1.38620 * 120.00146 * 185.05406 * 16 15 14 19 19 N 1.31576 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00148 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47390 * 89.99988 * 20 18 16 22 22 H 1.48508 * 109.47345 * 210.00255 * 20 18 16 23 23 H 1.48502 * 109.47113 * 330.00068 * 20 18 16 24 24 C 1.38897 * 120.01195 * 0.25905 * 14 13 12 25 25 C 1.38009 * 120.00414 * 359.44846 * 24 14 13 26 26 H 1.09000 * 109.46956 * 299.99677 * 1 2 3 27 27 H 1.08995 * 109.46680 * 59.99889 * 1 2 3 28 28 H 1.09002 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47464 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47757 * 300.00076 * 3 2 1 31 31 H 1.09000 * 109.46916 * 60.00298 * 3 2 1 32 32 H 1.09000 * 109.46418 * 60.00048 * 4 2 1 33 33 H 1.08996 * 109.46777 * 300.00269 * 4 2 1 34 34 H 1.08996 * 109.47679 * 299.99909 * 5 4 2 35 35 H 1.09009 * 109.46677 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.46519 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.46928 * 59.99902 * 6 5 4 38 38 H 1.09002 * 109.46990 * 300.00138 * 7 6 5 39 39 H 1.08999 * 109.47094 * 180.02562 * 7 6 5 40 40 H 0.96995 * 119.99965 * 94.99825 * 10 8 7 41 41 H 1.07998 * 119.99900 * 359.97438 * 12 11 10 42 42 H 1.08003 * 119.99876 * 179.97438 * 13 12 11 43 43 H 0.97001 * 120.00486 * 179.97438 * 19 18 16 44 44 H 1.07999 * 119.99214 * 179.71953 * 24 14 13 45 45 H 1.08001 * 119.99979 * 180.27298 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 6 3.5705 -0.7204 1.2490 8 6 2.0406 -0.7209 1.2493 9 1 1.6776 -1.7487 1.2494 10 7 1.5521 -0.0309 2.4457 11 6 1.4192 -0.7286 3.6497 12 6 0.9564 -0.0742 4.7847 13 6 0.8258 -0.7632 5.9733 14 6 1.1573 -2.1106 6.0351 15 8 1.0290 -2.7882 7.2051 16 6 0.6856 -2.0707 8.2934 17 1 0.4460 -1.0222 8.1955 18 6 0.6398 -2.6788 9.5383 19 7 0.9320 -3.9561 9.6577 20 14 0.1632 -1.6848 11.0463 21 1 -1.3082 -1.7486 11.2366 22 1 0.8418 -2.2443 12.2429 23 1 0.5770 -0.2710 10.8584 24 6 1.6254 -2.7636 4.9022 25 6 1.7506 -2.0766 3.7118 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 -0.2074 -2.1392 33 1 1.6767 -1.7489 -1.2492 34 1 3.9331 0.3070 -1.2497 35 1 3.9334 -1.2342 -2.1398 36 1 5.1705 -1.4416 -0.0007 37 1 3.7176 -2.4694 -0.0001 38 1 3.9335 0.3074 1.2488 39 1 3.9345 -1.2338 2.1390 40 1 1.3211 0.9102 2.4025 41 1 0.6999 0.9738 4.7369 42 1 0.4665 -0.2545 6.8556 43 1 0.9003 -4.3816 10.5289 44 1 1.8874 -3.8102 4.9518 45 1 2.1105 -2.5855 2.8298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094274643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:30 Heat of formation + Delta-G solvation = -19.168803 kcal Electronic energy + Delta-G solvation = -23203.849053 eV Core-core repulsion = 19993.006443 eV Total energy + Delta-G solvation = -3210.842609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20492 -38.72567 -36.66441 -33.96854 -33.23294 -32.01376 -30.31644 -29.59379 -27.52594 -27.08590 -26.11802 -24.96056 -22.58877 -21.93606 -21.17983 -20.50052 -18.60523 -17.65349 -17.08001 -16.46696 -15.70336 -15.00290 -14.65444 -14.56756 -14.36086 -13.91130 -13.75170 -13.50981 -13.40345 -13.16132 -12.88882 -12.63690 -12.39524 -12.20908 -12.06345 -11.96796 -11.63830 -11.52765 -11.41844 -11.31155 -11.17513 -11.04306 -10.92402 -10.58009 -10.40317 -10.28208 -10.24044 -10.11337 -9.19159 -9.08947 -8.38745 -8.11905 -6.33290 -6.28492 -3.86127 2.25234 2.63177 3.20379 3.21144 3.25657 3.86325 4.08809 4.45686 4.51314 4.66859 4.74545 4.90205 5.06027 5.13118 5.22299 5.25540 5.27570 5.37448 5.47489 5.50826 5.53389 5.60367 5.69515 5.71288 5.77135 5.81940 5.85237 5.89221 5.95486 5.98569 6.03446 6.12445 6.21245 6.24148 6.28283 6.31243 6.45605 6.61645 6.91714 6.97633 7.19668 7.36437 7.50597 7.70237 8.06333 8.15586 8.32697 9.16972 9.92410 10.89818 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035023 B = 0.003142 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.283557 B = 8909.333484 C = 9263.149512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.144 4.144 4 C -0.106 4.106 5 C -0.122 4.122 6 C -0.118 4.118 7 C -0.138 4.138 8 C 0.173 3.827 9 H 0.073 0.927 10 N -0.752 5.752 11 C 0.129 3.871 12 C -0.145 4.145 13 C -0.189 4.189 14 C 0.112 3.888 15 O -0.190 6.190 16 C -0.386 4.386 17 H 0.087 0.913 18 C 0.036 3.964 19 N -0.870 5.870 20 Si 0.937 3.063 21 H -0.275 1.275 22 H -0.279 1.279 23 H -0.269 1.269 24 C -0.150 4.150 25 C -0.147 4.147 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.388 0.612 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.267 0.733 44 H 0.115 0.885 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 8.800 -20.767 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.070 4.070 3 C -0.201 4.201 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.156 4.156 7 C -0.177 4.177 8 C 0.066 3.934 9 H 0.091 0.909 10 N -0.387 5.387 11 C 0.031 3.969 12 C -0.167 4.167 13 C -0.209 4.209 14 C 0.059 3.941 15 O -0.095 6.095 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.167 4.167 19 N -0.507 5.507 20 Si 0.762 3.238 21 H -0.201 1.201 22 H -0.204 1.204 23 H -0.194 1.194 24 C -0.170 4.170 25 C -0.169 4.169 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.223 0.777 41 H 0.122 0.878 42 H 0.144 0.856 43 H 0.076 0.924 44 H 0.133 0.867 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.001 8.250 -20.607 22.399 hybrid contribution -0.332 0.934 0.807 1.278 sum 2.669 9.184 -19.800 21.989 Atomic orbital electron populations 1.21825 0.94221 1.02003 1.01568 1.20753 0.95699 0.95749 0.94825 1.21964 1.01545 0.95273 1.01345 1.21568 0.95547 1.00506 0.96751 1.21600 0.95624 1.00886 0.97817 1.21509 1.00146 0.99510 0.94441 1.22116 0.96668 1.01064 0.97878 1.20653 0.92428 0.96293 0.84002 0.90942 1.44354 1.76228 1.11433 1.06678 1.17392 1.01844 0.91638 0.86012 1.20216 1.05828 0.98573 0.92082 1.20977 1.07026 0.94878 0.98023 1.19232 0.95931 0.90734 0.88164 1.83985 1.77646 1.34784 1.13087 1.21225 1.46670 0.94444 0.83930 0.89513 1.25201 0.97332 0.96196 0.97984 1.70046 1.46159 1.09851 1.24619 0.85777 0.78656 0.79151 0.80188 1.20093 1.20431 1.19387 1.20029 1.05893 0.99882 0.91176 1.20200 1.06803 0.92771 0.97125 0.92149 0.93083 0.92674 0.91865 0.92859 0.92792 0.91934 0.91815 0.91781 0.92264 0.92130 0.91989 0.91766 0.91384 0.77708 0.87813 0.85635 0.92352 0.86668 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.32 37.16 0.31 -1.00 16 2 C -0.07 -0.63 0.56 -154.50 -0.09 -0.72 16 3 C -0.14 -1.20 7.61 37.16 0.28 -0.91 16 4 C -0.11 -0.85 4.73 -26.73 -0.13 -0.97 16 5 C -0.12 -0.94 5.65 -26.73 -0.15 -1.09 16 6 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 7 C -0.14 -1.50 5.16 -26.74 -0.14 -1.64 16 8 C 0.17 1.94 1.28 -67.93 -0.09 1.85 16 9 H 0.07 0.91 6.48 -51.93 -0.34 0.58 16 10 N -0.75 -9.92 4.48 -52.12 -0.23 -10.16 16 11 C 0.13 2.22 6.64 -83.70 -0.56 1.67 16 12 C -0.14 -2.70 9.89 -39.40 -0.39 -3.09 16 13 C -0.19 -4.21 9.16 -39.42 -0.36 -4.57 16 14 C 0.11 2.77 6.65 -39.09 -0.26 2.51 16 15 O -0.19 -5.59 9.76 -0.05 0.00 -5.59 16 16 C -0.39 -11.12 9.48 30.87 0.29 -10.83 16 17 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 19 N -0.87 -26.31 13.67 55.48 0.76 -25.55 16 20 Si 0.94 21.17 29.55 -169.99 -5.02 16.15 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 24 C -0.15 -3.25 9.98 -39.42 -0.39 -3.64 16 25 C -0.15 -2.68 8.84 -39.40 -0.35 -3.03 16 26 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.46 6.51 -51.93 -0.34 0.12 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 35 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 39 H 0.07 0.88 7.71 -51.93 -0.40 0.48 16 40 H 0.39 4.65 6.67 -40.82 -0.27 4.37 16 41 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.13 2.81 5.63 -52.48 -0.30 2.52 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 45 H 0.11 1.76 6.11 -52.49 -0.32 1.44 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -30.79 343.12 -8.50 -39.29 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.90 Total: 6.46 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -2.27 Total: -25.77 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.53 Total: -35.71 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: 0.00 Total: -5.59 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.79 -8.50 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094274643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.117 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds