Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47172 * 2 1 4 4 C 1.53004 * 109.47410 * 239.99868 * 2 1 3 5 5 C 1.52998 * 109.47107 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46895 * 60.00441 * 5 4 2 7 7 C 1.52995 * 109.47049 * 299.99778 * 6 5 4 8 8 C 1.52992 * 109.47519 * 60.00115 * 7 6 5 9 9 H 1.08997 * 109.47013 * 59.99535 * 8 7 6 10 10 N 1.46499 * 109.47617 * 179.97438 * 8 7 6 11 11 C 1.39784 * 120.00081 * 275.00532 * 10 8 7 12 12 C 1.38947 * 120.00846 * 179.97438 * 11 10 8 13 13 C 1.38004 * 119.99367 * 180.02562 * 12 11 10 14 14 C 1.38899 * 120.00693 * 0.02562 * 13 12 11 15 15 O 1.35804 * 119.99027 * 179.97438 * 14 13 12 16 16 C 1.34807 * 117.00318 * 354.46051 * 15 14 13 17 17 H 1.08001 * 120.00088 * 5.06168 * 16 15 14 18 18 C 1.38620 * 120.00146 * 185.05406 * 16 15 14 19 19 N 1.31576 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00148 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47390 * 89.99988 * 20 18 16 22 22 H 1.48508 * 109.47345 * 210.00255 * 20 18 16 23 23 H 1.48502 * 109.47113 * 330.00068 * 20 18 16 24 24 C 1.38897 * 120.01195 * 0.25905 * 14 13 12 25 25 C 1.38009 * 120.00414 * 359.44846 * 24 14 13 26 26 H 1.09000 * 109.46956 * 299.99677 * 1 2 3 27 27 H 1.08995 * 109.46680 * 59.99889 * 1 2 3 28 28 H 1.09002 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47464 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47757 * 300.00076 * 3 2 1 31 31 H 1.09000 * 109.46916 * 60.00298 * 3 2 1 32 32 H 1.09000 * 109.46418 * 60.00048 * 4 2 1 33 33 H 1.08996 * 109.46777 * 300.00269 * 4 2 1 34 34 H 1.08996 * 109.47679 * 299.99909 * 5 4 2 35 35 H 1.09009 * 109.46677 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.46519 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.46928 * 59.99902 * 6 5 4 38 38 H 1.09002 * 109.46990 * 300.00138 * 7 6 5 39 39 H 1.08999 * 109.47094 * 180.02562 * 7 6 5 40 40 H 0.96995 * 119.99965 * 94.99825 * 10 8 7 41 41 H 1.07998 * 119.99900 * 359.97438 * 12 11 10 42 42 H 1.08003 * 119.99876 * 179.97438 * 13 12 11 43 43 H 0.97001 * 120.00486 * 179.97438 * 19 18 16 44 44 H 1.07999 * 119.99214 * 179.71953 * 24 14 13 45 45 H 1.08001 * 119.99979 * 180.27298 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 6 3.5705 -0.7204 1.2490 8 6 2.0406 -0.7209 1.2493 9 1 1.6776 -1.7487 1.2494 10 7 1.5521 -0.0309 2.4457 11 6 1.4192 -0.7286 3.6497 12 6 0.9564 -0.0742 4.7847 13 6 0.8258 -0.7632 5.9733 14 6 1.1573 -2.1106 6.0351 15 8 1.0290 -2.7882 7.2051 16 6 0.6856 -2.0707 8.2934 17 1 0.4460 -1.0222 8.1955 18 6 0.6398 -2.6788 9.5383 19 7 0.9320 -3.9561 9.6577 20 14 0.1632 -1.6848 11.0463 21 1 -1.3082 -1.7486 11.2366 22 1 0.8418 -2.2443 12.2429 23 1 0.5770 -0.2710 10.8584 24 6 1.6254 -2.7636 4.9022 25 6 1.7506 -2.0766 3.7118 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 -0.2074 -2.1392 33 1 1.6767 -1.7489 -1.2492 34 1 3.9331 0.3070 -1.2497 35 1 3.9334 -1.2342 -2.1398 36 1 5.1705 -1.4416 -0.0007 37 1 3.7176 -2.4694 -0.0001 38 1 3.9335 0.3074 1.2488 39 1 3.9345 -1.2338 2.1390 40 1 1.3211 0.9102 2.4025 41 1 0.6999 0.9738 4.7369 42 1 0.4665 -0.2545 6.8556 43 1 0.9003 -4.3816 10.5289 44 1 1.8874 -3.8102 4.9518 45 1 2.1105 -2.5855 2.8298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094274643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = -36.319133 kcal Electronic energy + Delta-G solvation = -23204.592747 eV Core-core repulsion = 19993.006443 eV Total energy + Delta-G solvation = -3211.586303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.21284 -40.34610 -38.31895 -35.23107 -34.18509 -33.91852 -31.87906 -30.73959 -28.50972 -28.21875 -27.31932 -26.63215 -23.84698 -23.31522 -22.16307 -21.80707 -19.88533 -19.12041 -18.84854 -17.81714 -16.90980 -16.27496 -16.01047 -15.63912 -15.47045 -15.42724 -15.28584 -14.88226 -14.55115 -14.28363 -14.04429 -13.98346 -13.79509 -13.44869 -13.33031 -12.91491 -12.87215 -12.75489 -12.72564 -12.35383 -12.30796 -12.28621 -12.11056 -11.94530 -11.74259 -11.21843 -11.11726 -11.02282 -10.92207 -10.79569 -10.09811 -9.76183 -8.38777 -7.88832 -6.02261 0.59750 0.95615 1.36486 1.46500 1.54028 2.22998 2.68055 2.92390 3.26467 3.67637 3.68536 3.79513 3.92952 4.14633 4.17857 4.19246 4.31906 4.41277 4.49166 4.50524 4.57919 4.60449 4.71104 4.78811 4.84398 4.90165 4.95427 5.00915 5.09081 5.13869 5.14355 5.18336 5.22120 5.25054 5.31173 5.31839 5.42135 5.47201 5.50555 5.53386 5.57251 5.70037 5.80023 6.01937 6.12296 6.67412 7.06116 7.09713 7.94649 8.85959 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035023 B = 0.003142 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.283557 B = 8909.333484 C = 9263.149512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.134 4.134 8 C 0.168 3.832 9 H 0.062 0.938 10 N -0.736 5.736 11 C 0.160 3.840 12 C -0.148 4.148 13 C -0.192 4.192 14 C 0.060 3.940 15 O -0.244 6.244 16 C -0.406 4.406 17 H 0.098 0.902 18 C -0.029 4.029 19 N -0.928 5.928 20 Si 1.017 2.983 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.254 1.254 24 C -0.155 4.155 25 C -0.146 4.146 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.400 0.600 41 H 0.137 0.863 42 H 0.118 0.882 43 H 0.269 0.731 44 H 0.110 0.890 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 11.513 -23.438 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.063 4.063 3 C -0.201 4.201 4 C -0.142 4.142 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.173 4.173 8 C 0.062 3.938 9 H 0.080 0.920 10 N -0.370 5.370 11 C 0.058 3.942 12 C -0.170 4.170 13 C -0.211 4.211 14 C 0.011 3.989 15 O -0.152 6.152 16 C -0.483 4.483 17 H 0.115 0.885 18 C -0.225 4.225 19 N -0.567 5.567 20 Si 0.836 3.164 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.175 4.175 25 C -0.168 4.168 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.236 0.764 41 H 0.155 0.845 42 H 0.136 0.864 43 H 0.078 0.922 44 H 0.128 0.872 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.100 11.014 -23.375 26.025 hybrid contribution -0.298 0.186 1.237 1.286 sum 2.802 11.200 -22.138 24.967 Atomic orbital electron populations 1.21828 0.94368 1.01534 1.01885 1.20705 0.95459 0.96248 0.93934 1.21965 1.01671 0.94476 1.01943 1.21574 0.95738 1.00357 0.96562 1.21583 0.95321 1.01192 0.97443 1.21501 1.00546 0.99268 0.94144 1.22049 0.95954 1.01344 0.97978 1.20856 0.92906 0.95943 0.84092 0.92013 1.44463 1.74768 1.11926 1.05850 1.17501 0.98360 0.91261 0.87031 1.20474 1.05469 1.00025 0.91060 1.21037 1.06817 0.94034 0.99245 1.19710 0.99031 0.92327 0.87832 1.83932 1.80241 1.36504 1.14508 1.21753 1.46759 0.95145 0.84599 0.88493 1.26527 0.97139 0.97473 1.01355 1.70205 1.48795 1.12126 1.25621 0.84614 0.78680 0.77869 0.75199 1.18922 1.19743 1.17742 1.20218 1.05639 1.00009 0.91631 1.20408 1.06372 0.93356 0.96660 0.93155 0.91497 0.93549 0.91667 0.91487 0.93056 0.90452 0.92159 0.91153 0.91046 0.91547 0.92297 0.91256 0.93694 0.76353 0.84476 0.86437 0.92168 0.87182 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.32 71.98 0.60 -1.59 16 2 C -0.06 -0.93 0.56 -52.18 -0.03 -0.96 16 3 C -0.14 -1.83 7.61 71.98 0.55 -1.28 16 4 C -0.10 -1.30 4.73 30.60 0.14 -1.16 16 5 C -0.12 -1.41 5.65 30.60 0.17 -1.23 16 6 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 7 C -0.13 -2.58 5.16 30.59 0.16 -2.43 16 8 C 0.17 3.32 1.28 44.99 0.06 3.38 16 9 H 0.06 1.41 6.48 -2.39 -0.02 1.39 16 10 N -0.74 -17.31 4.48 -318.80 -1.43 -18.74 16 11 C 0.16 5.18 6.64 38.21 0.25 5.43 16 12 C -0.15 -5.28 9.89 22.38 0.22 -5.06 16 13 C -0.19 -8.67 9.16 22.37 0.20 -8.47 16 14 C 0.06 3.15 6.65 22.59 0.15 3.30 16 15 O -0.24 -15.31 9.76 -23.11 -0.23 -15.53 16 16 C -0.41 -24.57 9.48 67.91 0.64 -23.92 16 17 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 18 C -0.03 -1.71 5.49 84.82 0.47 -1.24 16 19 N -0.93 -59.02 13.67 21.61 0.30 -58.72 16 20 Si 1.02 44.47 29.55 68.60 2.03 46.50 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 24 C -0.16 -6.96 9.98 22.37 0.22 -6.74 16 25 C -0.15 -5.21 8.84 22.39 0.20 -5.01 16 26 H 0.05 0.89 7.45 -2.39 -0.02 0.87 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.83 4.81 -2.38 -0.01 0.82 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.68 6.51 -2.39 -0.02 0.67 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.78 6.43 -2.39 -0.02 0.77 16 35 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.28 6.43 -2.39 -0.02 1.26 16 39 H 0.04 1.08 7.71 -2.39 -0.02 1.06 16 40 H 0.40 8.11 6.67 -92.71 -0.62 7.49 16 41 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 42 H 0.12 5.40 5.63 -2.91 -0.02 5.39 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 45 H 0.14 4.14 6.11 -2.91 -0.02 4.12 16 Total: -1.00 -71.49 343.12 5.23 -66.25 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.37 Total: 28.82 kcal Atomic # 6 Polarization: -52.77 SS G_CDS: 4.19 Total: -48.58 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.13 Total: -77.46 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.23 Total: -15.53 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -71.49 5.23 -66.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094274643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.935 kcal (2) G-P(sol) polarization free energy of solvation -71.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds