Wall clock time and date at job start Tue Mar 31 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47595 * 2 1 4 4 C 1.53002 * 109.46962 * 119.99913 * 2 1 3 5 5 C 1.53005 * 109.47108 * 59.99659 * 4 2 1 6 6 C 1.52997 * 109.46804 * 60.00197 * 5 4 2 7 7 C 1.53000 * 109.47536 * 300.00143 * 6 5 4 8 8 C 1.52995 * 109.47058 * 59.99544 * 7 6 5 9 9 H 1.09005 * 109.47010 * 60.00614 * 8 7 6 10 10 N 1.46504 * 109.46880 * 180.02562 * 8 7 6 11 11 C 1.39669 * 120.00334 * 274.99900 * 10 8 7 12 12 C 1.39002 * 120.03838 * 0.02562 * 11 10 8 13 13 C 1.38149 * 120.06420 * 179.97438 * 12 11 10 14 14 C 1.38174 * 120.14062 * 359.97438 * 13 12 11 15 15 C 1.38912 * 120.07886 * 0.04699 * 14 13 12 16 16 O 1.35752 * 120.02971 * 179.97438 * 15 14 13 17 17 C 1.34832 * 116.99733 * 174.48863 * 16 15 14 18 18 H 1.08002 * 120.00509 * 5.07421 * 17 16 15 19 19 C 1.38657 * 119.99954 * 185.07916 * 17 16 15 20 20 N 1.31561 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00132 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47321 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46908 * 119.99930 * 21 19 17 24 24 H 1.48496 * 109.47070 * 239.99584 * 21 19 17 25 25 C 1.38747 * 120.04081 * 179.72699 * 11 10 8 26 26 H 1.08997 * 109.47537 * 300.00244 * 1 2 3 27 27 H 1.09001 * 109.46458 * 60.00366 * 1 2 3 28 28 H 1.08998 * 109.47364 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47653 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46803 * 300.00126 * 3 2 1 31 31 H 1.09007 * 109.46869 * 59.99345 * 3 2 1 32 32 H 1.09007 * 109.46864 * 300.00265 * 4 2 1 33 33 H 1.08996 * 109.47104 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47303 * 300.00081 * 5 4 2 35 35 H 1.08998 * 109.47370 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.47418 * 179.97438 * 6 5 4 37 37 H 1.09005 * 109.47100 * 59.99876 * 6 5 4 38 38 H 1.08997 * 109.47540 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.46708 * 299.99973 * 7 6 5 40 40 H 0.97001 * 119.99523 * 95.00931 * 10 8 7 41 41 H 1.08005 * 119.97041 * 0.02562 * 12 11 10 42 42 H 1.08003 * 119.93419 * 180.02562 * 13 12 11 43 43 H 1.08000 * 119.95638 * 180.02562 * 14 13 12 44 44 H 0.97001 * 119.99730 * 180.02562 * 20 19 17 45 45 H 1.07994 * 120.07315 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 -2.1638 1.2493 6 6 2.0399 -2.8850 0.0001 7 6 1.5300 -2.1638 -1.2492 8 6 2.0400 -0.7213 -1.2491 9 1 3.1301 -0.7214 -1.2491 10 7 1.5513 -0.0306 -2.4451 11 6 2.2523 -0.1369 -3.6485 12 6 3.4135 -0.8983 -3.7124 13 6 4.1070 -1.0042 -4.9026 14 6 3.6488 -0.3546 -6.0327 15 6 2.4893 0.4082 -5.9754 16 8 2.0403 1.0464 -7.0862 17 6 0.8511 1.6749 -6.9925 18 1 0.3403 1.7254 -6.0422 19 6 0.2837 2.2562 -8.1162 20 7 0.9061 2.1950 -9.2737 21 14 -1.3642 3.1262 -7.9866 22 1 -1.8522 3.0560 -6.5859 23 1 -1.2058 4.5482 -8.3843 24 1 -2.3442 2.4668 -8.8865 25 6 1.7871 0.5123 -4.7830 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6765 -0.2074 2.1393 33 1 3.1299 -0.7217 1.2491 34 1 0.4399 -2.1637 1.2493 35 1 1.8928 -2.6775 2.1395 36 1 1.6769 -3.9128 0.0003 37 1 3.1299 -2.8850 0.0002 38 1 1.8930 -2.6779 -2.1391 39 1 0.4400 -2.1638 -1.2492 40 1 0.7409 0.5007 -2.4012 41 1 3.7735 -1.4083 -2.8311 42 1 5.0087 -1.5967 -4.9500 43 1 4.1930 -0.4398 -6.9617 44 1 0.5093 2.6021 -10.0597 45 1 0.8823 1.1003 -4.7374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094277024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:36 Heat of formation + Delta-G solvation = -22.356418 kcal Electronic energy + Delta-G solvation = -23493.371610 eV Core-core repulsion = 20282.390776 eV Total energy + Delta-G solvation = -3210.980835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.20747 -38.73449 -36.61770 -34.17563 -33.27461 -32.12913 -30.34195 -28.70018 -27.64322 -27.46573 -26.06351 -25.19711 -22.64707 -21.70716 -21.21513 -20.40232 -18.60431 -17.72480 -17.28084 -16.02193 -15.37932 -15.17302 -14.77362 -14.48534 -14.38206 -14.15655 -13.82309 -13.50699 -13.44921 -13.16794 -12.96097 -12.74329 -12.30381 -12.17730 -12.00982 -11.94200 -11.60230 -11.58718 -11.39958 -11.24101 -11.05664 -10.94192 -10.72957 -10.60831 -10.39423 -10.28656 -10.21211 -10.12177 -9.32139 -9.27607 -8.71571 -7.29213 -6.68133 -6.37316 -3.96256 2.44493 2.63763 3.16098 3.17010 3.22169 3.82464 4.02668 4.47064 4.52767 4.68566 4.77409 4.91220 5.06581 5.14752 5.19336 5.27062 5.28653 5.37974 5.43768 5.51589 5.57255 5.61260 5.73228 5.77446 5.79491 5.88734 5.90223 5.95125 5.98503 6.04351 6.07118 6.14988 6.25332 6.25708 6.34730 6.40951 6.48849 6.72762 6.74207 7.11659 7.20921 7.45597 7.55277 7.74629 8.09623 8.11294 8.29790 9.09173 9.82816 10.81329 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.004064 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.965031 B = 6888.567729 C = 7776.082030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.105 4.105 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.138 4.138 8 C 0.170 3.830 9 H 0.076 0.924 10 N -0.747 5.747 11 C 0.253 3.747 12 C -0.279 4.279 13 C -0.040 4.040 14 C -0.239 4.239 15 C 0.190 3.810 16 O -0.180 6.180 17 C -0.387 4.387 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.939 3.061 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.304 4.304 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.392 0.608 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.268 0.732 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -6.301 20.484 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 C -0.198 4.198 4 C -0.143 4.143 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.177 4.177 8 C 0.064 3.936 9 H 0.094 0.906 10 N -0.378 5.378 11 C 0.151 3.849 12 C -0.302 4.302 13 C -0.059 4.059 14 C -0.259 4.259 15 C 0.136 3.864 16 O -0.083 6.083 17 C -0.464 4.464 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.501 5.501 21 Si 0.764 3.236 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.327 4.327 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.228 0.772 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.078 0.922 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.612 -6.277 20.132 21.097 hybrid contribution -1.194 0.649 0.071 1.361 sum -0.582 -5.629 20.203 20.981 Atomic orbital electron populations 1.21981 0.94607 1.02165 1.01554 1.20758 0.95973 0.95607 0.94722 1.21841 1.01088 0.95060 1.01775 1.21566 1.00650 0.95325 0.96770 1.21604 1.01044 0.95555 0.97770 1.21500 1.00774 0.98778 0.94427 1.22105 1.01363 0.96274 0.97944 1.20727 0.98496 0.90491 0.83856 0.90630 1.44690 1.29592 1.56529 1.06963 1.17460 0.90302 0.92227 0.84878 1.20096 1.00015 1.11620 0.98490 1.20373 0.97326 0.96386 0.91861 1.20020 0.99857 1.06789 0.99254 1.19066 0.91866 0.88981 0.86527 1.83987 1.35525 1.58527 1.30298 1.21340 0.95084 1.33178 0.96781 0.89192 1.25261 0.99414 0.97639 0.94284 1.70055 1.38138 1.42408 0.99486 0.85680 0.80440 0.78838 0.78627 1.19267 1.20239 1.20226 1.20496 1.06317 1.13337 0.92587 0.92736 0.92662 0.91835 0.92677 0.92043 0.92967 0.91861 0.91846 0.91719 0.92251 0.92113 0.92041 0.91282 0.91672 0.77248 0.87827 0.87366 0.87053 0.92228 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 7.61 37.16 0.28 -1.10 16 2 C -0.07 -0.69 0.56 -154.51 -0.09 -0.77 16 3 C -0.14 -1.46 8.32 37.16 0.31 -1.15 16 4 C -0.11 -0.88 4.73 -26.73 -0.13 -1.01 16 5 C -0.12 -0.98 5.65 -26.73 -0.15 -1.13 16 6 C -0.12 -1.06 5.92 -26.73 -0.16 -1.21 16 7 C -0.14 -1.56 5.16 -26.73 -0.14 -1.70 16 8 C 0.17 2.04 1.28 -67.93 -0.09 1.95 16 9 H 0.08 0.98 6.48 -51.93 -0.34 0.64 16 10 N -0.75 -11.07 4.47 -52.19 -0.23 -11.30 16 11 C 0.25 4.75 6.63 -83.82 -0.56 4.19 16 12 C -0.28 -5.03 8.85 -39.33 -0.35 -5.38 16 13 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 14 C -0.24 -5.30 9.99 -39.36 -0.39 -5.69 16 15 C 0.19 4.77 6.65 -39.14 -0.26 4.51 16 16 O -0.18 -5.30 9.76 0.04 0.00 -5.30 16 17 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 18 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 19 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 20 N -0.87 -25.89 13.67 55.48 0.76 -25.13 16 21 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.30 -6.80 9.01 -39.20 -0.35 -7.15 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.56 6.50 -51.93 -0.34 0.23 16 28 H 0.06 0.59 4.81 -51.93 -0.25 0.34 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.73 7.44 -51.93 -0.39 0.34 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.91 7.70 -51.93 -0.40 0.51 16 39 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 40 H 0.39 5.60 6.66 -40.82 -0.27 5.33 16 41 H 0.10 1.63 6.10 -52.48 -0.32 1.31 16 42 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 43 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.12 2.77 5.63 -52.49 -0.30 2.48 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -30.61 343.10 -8.50 -39.10 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.90 Total: 8.17 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -2.27 Total: -26.63 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.53 Total: -36.44 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: 0.00 Total: -5.30 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.61 -8.50 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094277024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.747 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds