Wall clock time and date at job start Tue Mar 31 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47595 * 2 1 4 4 C 1.53002 * 109.46962 * 119.99913 * 2 1 3 5 5 C 1.53005 * 109.47108 * 59.99659 * 4 2 1 6 6 C 1.52997 * 109.46804 * 60.00197 * 5 4 2 7 7 C 1.53000 * 109.47536 * 300.00143 * 6 5 4 8 8 C 1.52995 * 109.47058 * 59.99544 * 7 6 5 9 9 H 1.09005 * 109.47010 * 60.00614 * 8 7 6 10 10 N 1.46504 * 109.46880 * 180.02562 * 8 7 6 11 11 C 1.39669 * 120.00334 * 274.99900 * 10 8 7 12 12 C 1.39002 * 120.03838 * 0.02562 * 11 10 8 13 13 C 1.38149 * 120.06420 * 179.97438 * 12 11 10 14 14 C 1.38174 * 120.14062 * 359.97438 * 13 12 11 15 15 C 1.38912 * 120.07886 * 0.04699 * 14 13 12 16 16 O 1.35752 * 120.02971 * 179.97438 * 15 14 13 17 17 C 1.34832 * 116.99733 * 174.48863 * 16 15 14 18 18 H 1.08002 * 120.00509 * 5.07421 * 17 16 15 19 19 C 1.38657 * 119.99954 * 185.07916 * 17 16 15 20 20 N 1.31561 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00132 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47321 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46908 * 119.99930 * 21 19 17 24 24 H 1.48496 * 109.47070 * 239.99584 * 21 19 17 25 25 C 1.38747 * 120.04081 * 179.72699 * 11 10 8 26 26 H 1.08997 * 109.47537 * 300.00244 * 1 2 3 27 27 H 1.09001 * 109.46458 * 60.00366 * 1 2 3 28 28 H 1.08998 * 109.47364 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47653 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46803 * 300.00126 * 3 2 1 31 31 H 1.09007 * 109.46869 * 59.99345 * 3 2 1 32 32 H 1.09007 * 109.46864 * 300.00265 * 4 2 1 33 33 H 1.08996 * 109.47104 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47303 * 300.00081 * 5 4 2 35 35 H 1.08998 * 109.47370 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.47418 * 179.97438 * 6 5 4 37 37 H 1.09005 * 109.47100 * 59.99876 * 6 5 4 38 38 H 1.08997 * 109.47540 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.46708 * 299.99973 * 7 6 5 40 40 H 0.97001 * 119.99523 * 95.00931 * 10 8 7 41 41 H 1.08005 * 119.97041 * 0.02562 * 12 11 10 42 42 H 1.08003 * 119.93419 * 180.02562 * 13 12 11 43 43 H 1.08000 * 119.95638 * 180.02562 * 14 13 12 44 44 H 0.97001 * 119.99730 * 180.02562 * 20 19 17 45 45 H 1.07994 * 120.07315 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 -2.1638 1.2493 6 6 2.0399 -2.8850 0.0001 7 6 1.5300 -2.1638 -1.2492 8 6 2.0400 -0.7213 -1.2491 9 1 3.1301 -0.7214 -1.2491 10 7 1.5513 -0.0306 -2.4451 11 6 2.2523 -0.1369 -3.6485 12 6 3.4135 -0.8983 -3.7124 13 6 4.1070 -1.0042 -4.9026 14 6 3.6488 -0.3546 -6.0327 15 6 2.4893 0.4082 -5.9754 16 8 2.0403 1.0464 -7.0862 17 6 0.8511 1.6749 -6.9925 18 1 0.3403 1.7254 -6.0422 19 6 0.2837 2.2562 -8.1162 20 7 0.9061 2.1950 -9.2737 21 14 -1.3642 3.1262 -7.9866 22 1 -1.8522 3.0560 -6.5859 23 1 -1.2058 4.5482 -8.3843 24 1 -2.3442 2.4668 -8.8865 25 6 1.7871 0.5123 -4.7830 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6765 -0.2074 2.1393 33 1 3.1299 -0.7217 1.2491 34 1 0.4399 -2.1637 1.2493 35 1 1.8928 -2.6775 2.1395 36 1 1.6769 -3.9128 0.0003 37 1 3.1299 -2.8850 0.0002 38 1 1.8930 -2.6779 -2.1391 39 1 0.4400 -2.1638 -1.2492 40 1 0.7409 0.5007 -2.4012 41 1 3.7735 -1.4083 -2.8311 42 1 5.0087 -1.5967 -4.9500 43 1 4.1930 -0.4398 -6.9617 44 1 0.5093 2.6021 -10.0597 45 1 0.8823 1.1003 -4.7374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094277024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:35 Heat of formation + Delta-G solvation = -39.384170 kcal Electronic energy + Delta-G solvation = -23494.109989 eV Core-core repulsion = 20282.390776 eV Total energy + Delta-G solvation = -3211.719213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26541 -40.38370 -38.29906 -35.47946 -34.25312 -34.04189 -31.56907 -30.29150 -28.99412 -28.26846 -27.22939 -26.95235 -23.67636 -23.39208 -22.15827 -21.73128 -19.96260 -19.26505 -18.86931 -17.35408 -16.79981 -16.55601 -15.97471 -15.86026 -15.64317 -15.51926 -15.33008 -14.92171 -14.56440 -14.37336 -14.24440 -13.92046 -13.70323 -13.48629 -13.32817 -12.94366 -12.80766 -12.76492 -12.46670 -12.37177 -12.31514 -12.25975 -12.10199 -11.93046 -11.76120 -11.30514 -11.24296 -11.10093 -10.93897 -10.82590 -10.49990 -9.09266 -8.45373 -8.18209 -6.13530 0.77868 0.94132 1.33410 1.43169 1.51851 2.18095 2.57382 2.89793 3.27792 3.59921 3.64668 3.76208 3.89646 4.16777 4.21465 4.30482 4.34128 4.42490 4.46854 4.49910 4.58366 4.62846 4.74520 4.76595 4.79217 4.88164 4.97393 5.00412 5.07108 5.11505 5.13351 5.17096 5.18516 5.20906 5.27405 5.30282 5.40824 5.43723 5.50285 5.51595 5.66696 5.76987 5.82317 6.06159 6.13858 6.65611 6.89890 7.00258 7.84023 8.78614 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.004064 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.965031 B = 6888.567729 C = 7776.082030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.102 4.102 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.134 4.134 8 C 0.166 3.834 9 H 0.073 0.927 10 N -0.736 5.736 11 C 0.262 3.738 12 C -0.264 4.264 13 C -0.026 4.026 14 C -0.264 4.264 15 C 0.154 3.846 16 O -0.233 6.233 17 C -0.410 4.410 18 H 0.098 0.902 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.018 2.982 22 H -0.253 1.253 23 H -0.267 1.267 24 H -0.268 1.268 25 C -0.318 4.318 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.395 0.605 41 H 0.138 0.862 42 H 0.150 0.850 43 H 0.105 0.895 44 H 0.272 0.728 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -7.359 24.370 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.065 4.065 3 C -0.197 4.197 4 C -0.140 4.140 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.173 4.173 8 C 0.062 3.938 9 H 0.091 0.909 10 N -0.365 5.365 11 C 0.157 3.843 12 C -0.286 4.286 13 C -0.045 4.045 14 C -0.285 4.285 15 C 0.102 3.898 16 O -0.140 6.140 17 C -0.486 4.486 18 H 0.115 0.885 19 C -0.221 4.221 20 N -0.561 5.561 21 Si 0.838 3.162 22 H -0.177 1.177 23 H -0.192 1.192 24 H -0.193 1.193 25 C -0.342 4.342 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.231 0.769 41 H 0.156 0.844 42 H 0.168 0.832 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.329 -7.366 24.105 25.207 hybrid contribution -0.956 0.815 -0.863 1.524 sum -0.627 -6.551 23.241 24.155 Atomic orbital electron populations 1.21986 0.94236 1.02429 1.01639 1.20725 0.96214 0.95160 0.94351 1.21840 1.00910 0.95410 1.01589 1.21562 1.00843 0.95489 0.96096 1.21595 1.01166 0.95172 0.97747 1.21485 1.01018 0.99005 0.93598 1.22046 1.01212 0.95504 0.98553 1.20983 0.98369 0.91099 0.83393 0.90874 1.44863 1.29087 1.55960 1.06590 1.17532 0.90587 0.90996 0.85166 1.20530 0.98770 1.09974 0.99351 1.20811 0.98169 0.94949 0.90555 1.20234 0.99622 1.07956 1.00666 1.19627 0.93378 0.90134 0.86616 1.83947 1.36493 1.60859 1.32670 1.21816 0.95516 1.33675 0.97581 0.88479 1.26575 1.03754 0.98250 0.93519 1.70200 1.40662 1.44640 1.00577 0.84540 0.74753 0.77534 0.79406 1.17684 1.19240 1.19271 1.20489 1.06126 1.14346 0.93248 0.91354 0.93935 0.91475 0.92925 0.94042 0.91399 0.90505 0.91560 0.91555 0.90660 0.91341 0.91604 0.93130 0.91932 0.76920 0.84398 0.83217 0.87692 0.91910 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 7.61 71.98 0.55 -1.83 16 2 C -0.06 -1.07 0.56 -52.18 -0.03 -1.10 16 3 C -0.14 -2.59 8.32 71.98 0.60 -1.99 16 4 C -0.10 -1.31 4.73 30.60 0.14 -1.17 16 5 C -0.12 -1.43 5.65 30.60 0.17 -1.25 16 6 C -0.11 -1.64 5.92 30.59 0.18 -1.46 16 7 C -0.13 -2.67 5.16 30.59 0.16 -2.51 16 8 C 0.17 3.54 1.28 44.99 0.06 3.60 16 9 H 0.07 1.64 6.48 -2.38 -0.02 1.62 16 10 N -0.74 -20.82 4.47 -319.02 -1.43 -22.25 16 11 C 0.26 9.61 6.63 38.20 0.25 9.86 16 12 C -0.26 -8.83 8.85 22.43 0.20 -8.63 16 13 C -0.03 -0.94 10.03 22.23 0.22 -0.71 16 14 C -0.26 -12.03 9.99 22.42 0.22 -11.81 16 15 C 0.15 8.11 6.65 22.56 0.15 8.26 16 16 O -0.23 -14.70 9.76 -22.78 -0.22 -14.92 16 17 C -0.41 -24.79 9.49 67.92 0.64 -24.15 16 18 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 19 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 20 N -0.92 -58.13 13.67 21.61 0.30 -57.84 16 21 Si 1.02 44.15 29.55 68.60 2.03 46.18 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 C -0.32 -14.70 9.01 22.52 0.20 -14.50 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.04 0.80 6.50 -2.39 -0.02 0.78 16 28 H 0.07 1.05 4.81 -2.39 -0.01 1.04 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.92 7.44 -2.39 -0.02 0.90 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.80 6.43 -2.39 -0.02 0.78 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.05 1.20 7.70 -2.39 -0.02 1.18 16 39 H 0.06 1.29 6.43 -2.38 -0.02 1.27 16 40 H 0.40 10.99 6.66 -92.71 -0.62 10.37 16 41 H 0.14 3.73 6.10 -2.91 -0.02 3.72 16 42 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 44 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 45 H 0.11 5.25 5.63 -2.91 -0.02 5.23 16 Total: -1.00 -71.53 343.10 5.24 -66.30 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.37 Total: 32.86 kcal Atomic # 6 Polarization: -54.52 SS G_CDS: 4.19 Total: -50.33 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.13 Total: -80.08 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.22 Total: -14.92 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -71.53 5.24 -66.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094277024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.911 kcal (2) G-P(sol) polarization free energy of solvation -71.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds