Wall clock time and date at job start Tue Mar 31 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 110.05879 * 2 1 4 4 C 1.54366 * 110.07037 * 238.53612 * 2 1 3 5 5 C 1.54892 * 104.20046 * 264.37555 * 4 2 1 6 6 C 1.54886 * 102.74904 * 322.03043 * 5 4 2 7 7 C 1.53881 * 110.03069 * 121.41423 * 2 1 3 8 8 H 1.09004 * 110.02956 * 359.94949 * 7 2 1 9 9 N 1.46897 * 110.03301 * 238.57236 * 7 2 1 10 10 C 1.46894 * 111.00329 * 155.69138 * 9 7 2 11 11 C 1.50704 * 109.47472 * 179.97438 * 10 9 7 12 12 C 1.38307 * 119.92756 * 269.72824 * 11 10 9 13 13 C 1.38099 * 120.06594 * 179.72716 * 12 11 10 14 14 C 1.38876 * 119.92936 * 0.54028 * 13 12 11 15 15 O 1.35752 * 120.06787 * 179.75486 * 14 13 12 16 16 C 1.34832 * 116.99955 * 174.44394 * 15 14 13 17 17 H 1.08002 * 119.99764 * 5.05189 * 16 15 14 18 18 C 1.38650 * 120.00073 * 185.05641 * 16 15 14 19 19 N 1.31558 * 119.99782 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00313 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46844 * 89.99578 * 20 18 16 22 22 H 1.48495 * 109.47248 * 209.99314 * 20 18 16 23 23 H 1.48505 * 109.46765 * 329.99759 * 20 18 16 24 24 C 1.38886 * 119.86619 * 359.72963 * 14 13 12 25 25 C 1.38106 * 119.92576 * 0.02562 * 24 14 13 26 26 H 1.08998 * 109.46813 * 298.58738 * 1 2 3 27 27 H 1.08993 * 109.46471 * 58.58723 * 1 2 3 28 28 H 1.08998 * 109.46670 * 178.58904 * 1 2 3 29 29 H 1.08995 * 109.47225 * 181.41574 * 3 2 1 30 30 H 1.09007 * 109.46780 * 301.41687 * 3 2 1 31 31 H 1.09004 * 109.47317 * 61.41187 * 3 2 1 32 32 H 1.09008 * 110.50936 * 145.68959 * 4 2 1 33 33 H 1.08996 * 110.46808 * 23.04367 * 4 2 1 34 34 H 1.09004 * 110.75883 * 203.71684 * 5 4 2 35 35 H 1.09002 * 110.75335 * 80.34733 * 5 4 2 36 36 H 1.09002 * 110.48924 * 279.26668 * 6 5 4 37 37 H 1.08994 * 110.60199 * 156.67162 * 6 5 4 38 38 H 1.00908 * 110.99742 * 279.64650 * 9 7 2 39 39 H 1.09007 * 109.47037 * 299.99986 * 10 9 7 40 40 H 1.09005 * 109.47031 * 59.99488 * 10 9 7 41 41 H 1.08000 * 119.96466 * 359.97438 * 12 11 10 42 42 H 1.07995 * 120.03366 * 180.27223 * 13 12 11 43 43 H 0.97003 * 119.99821 * 180.02562 * 19 18 16 44 44 H 1.07992 * 120.03758 * 179.97438 * 24 14 13 45 45 H 1.08001 * 119.96297 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0598 -0.7568 -1.2367 5 6 2.3284 -2.1914 -0.7181 6 6 2.8872 -1.9414 0.7047 7 6 2.0572 -0.7535 1.2338 8 1 1.2229 -1.1184 1.8330 9 7 2.9056 0.1335 2.0407 10 6 2.9496 -0.3099 3.4405 11 6 3.8278 0.6218 4.2353 12 6 5.1803 0.3594 4.3567 13 6 5.9888 1.2143 5.0797 14 6 5.4404 2.3322 5.6945 15 8 6.2316 3.1718 6.4101 16 6 5.6595 4.2971 6.8836 17 1 4.5989 4.4578 6.7580 18 6 6.4328 5.2482 7.5317 19 7 7.7246 5.0522 7.6850 20 14 5.6404 6.8076 8.1871 21 1 5.1886 6.5839 9.5840 22 1 6.6292 7.9152 8.1582 23 1 4.4735 7.1635 7.3404 24 6 4.0808 2.5900 5.5754 25 6 3.2786 1.7340 4.8468 26 1 -0.3633 0.4917 0.9024 27 1 -0.3632 0.5356 -0.8770 28 1 -0.3632 -1.0274 -0.0253 29 1 3.1444 1.4261 -0.0254 30 1 1.6762 1.9622 -0.8771 31 1 1.7175 1.9472 0.9024 32 1 2.9830 -0.3021 -1.5963 33 1 1.3080 -0.7710 -2.0258 34 1 3.0681 -2.6951 -1.3405 35 1 1.4031 -2.7659 -0.6743 36 1 3.9439 -1.6779 0.6588 37 1 2.7409 -2.8193 1.3339 38 1 3.8347 0.1971 1.6522 39 1 1.9417 -0.3025 3.8558 40 1 3.3550 -1.3206 3.4888 41 1 5.6053 -0.5128 3.8823 42 1 7.0456 1.0112 5.1705 43 1 8.2656 5.7174 8.1387 44 1 3.6514 3.4583 6.0527 45 1 2.2214 1.9340 4.7534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094321361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:53 Heat of formation + Delta-G solvation = -35.868762 kcal Electronic energy + Delta-G solvation = -22671.693331 eV Core-core repulsion = 19460.126558 eV Total energy + Delta-G solvation = -3211.566774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84762 -40.31753 -38.44237 -35.47823 -34.23040 -32.96069 -31.78298 -31.17311 -28.22110 -28.00447 -27.23698 -25.50299 -24.29746 -23.59994 -21.97422 -21.64133 -19.82722 -19.39886 -18.79664 -16.98653 -16.57931 -16.42153 -16.20462 -15.74303 -15.55772 -15.39476 -15.09276 -14.65061 -14.49581 -14.33079 -14.20255 -14.05286 -13.73629 -13.55594 -13.20836 -12.96665 -12.80874 -12.71633 -12.38562 -12.31898 -12.22948 -12.12781 -12.01219 -11.82209 -11.50794 -11.33379 -11.28466 -11.16150 -11.15570 -10.78801 -9.75764 -9.17318 -8.86040 -8.47023 -6.15054 0.62063 0.70346 1.34780 1.44028 1.52465 2.18038 2.80102 3.12301 3.49532 3.53665 3.66514 3.79616 4.03708 4.09000 4.13348 4.22566 4.42612 4.48060 4.49240 4.52546 4.62086 4.62951 4.65195 4.73775 4.84807 4.86645 4.95020 5.01521 5.07648 5.10552 5.11955 5.16948 5.18631 5.23633 5.30562 5.32420 5.40590 5.50734 5.58550 5.60433 5.69588 5.73588 5.85299 6.03753 6.21808 6.32759 6.56609 6.97958 7.79277 8.76411 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028317 B = 0.002954 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.583117 B = 9476.154478 C = 9959.699853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.060 4.060 3 C -0.114 4.114 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.152 4.152 7 C 0.091 3.909 8 H 0.079 0.921 9 N -0.680 5.680 10 C 0.123 3.877 11 C -0.154 4.154 12 C -0.060 4.060 13 C -0.205 4.205 14 C 0.113 3.887 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.100 0.900 18 C -0.023 4.023 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.254 1.254 24 C -0.244 4.244 25 C -0.050 4.050 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.341 0.659 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.145 0.855 42 H 0.111 0.889 43 H 0.273 0.727 44 H 0.115 0.885 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.519 -13.220 -16.333 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 C -0.172 4.172 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.191 4.191 7 C -0.019 4.019 8 H 0.097 0.903 9 N -0.310 5.310 10 C -0.005 4.005 11 C -0.155 4.155 12 C -0.079 4.079 13 C -0.224 4.224 14 C 0.063 3.937 15 O -0.141 6.141 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.837 3.163 21 H -0.187 1.187 22 H -0.195 1.195 23 H -0.177 1.177 24 C -0.263 4.263 25 C -0.069 4.069 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.160 0.840 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.163 0.837 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.618 -12.672 -16.061 25.144 hybrid contribution 0.845 0.212 0.634 1.078 sum -13.773 -12.461 -15.427 24.144 Atomic orbital electron populations 1.21845 0.93917 1.01745 1.01566 1.21198 0.95614 0.95362 0.93934 1.21528 1.00091 0.95285 1.00309 1.22513 1.00802 0.95193 0.96800 1.22392 1.01040 0.96727 0.95377 1.23095 0.99472 0.98914 0.97608 1.22340 0.95503 0.90246 0.93781 0.90303 1.60723 1.17294 1.51728 1.01287 1.20615 0.98169 0.94038 0.87718 1.19637 0.93991 0.98486 1.03419 1.20873 0.92936 0.97841 0.96201 1.20432 1.00330 0.96590 1.05074 1.19939 0.91029 0.91504 0.91228 1.83938 1.38138 1.30713 1.61273 1.21811 0.95027 0.95060 1.37032 0.88247 1.26583 0.95949 1.02467 0.97044 1.70186 1.06770 1.37051 1.42020 0.84598 0.77978 0.74827 0.78877 1.18734 1.19521 1.17728 1.21252 0.93373 1.03832 1.07879 1.20884 0.99311 0.92757 0.93930 0.93316 0.92387 0.92099 0.93733 0.93847 0.93224 0.92081 0.90999 0.91253 0.90892 0.91956 0.91442 0.84031 0.90388 0.93797 0.83741 0.87057 0.91848 0.86675 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.15 71.98 0.59 -1.36 16 2 C -0.06 -0.98 0.94 -51.42 -0.05 -1.03 16 3 C -0.11 -2.27 7.38 71.98 0.53 -1.74 16 4 C -0.12 -1.61 5.91 31.70 0.19 -1.42 16 5 C -0.12 -1.47 6.91 31.89 0.22 -1.25 16 6 C -0.15 -2.22 6.43 31.67 0.20 -2.01 16 7 C 0.09 1.55 2.86 45.64 0.13 1.68 16 8 H 0.08 1.35 7.35 -2.38 -0.02 1.33 16 9 N -0.68 -14.29 4.44 -491.81 -2.18 -16.47 16 10 C 0.12 2.77 5.63 85.56 0.48 3.25 16 11 C -0.15 -4.75 5.40 -19.83 -0.11 -4.86 16 12 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 13 C -0.20 -8.81 9.99 22.39 0.22 -8.59 16 14 C 0.11 5.75 6.65 22.58 0.15 5.90 16 15 O -0.23 -14.36 9.76 -22.78 -0.22 -14.58 16 16 C -0.41 -24.54 9.49 67.92 0.64 -23.90 16 17 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 18 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 19 N -0.92 -57.40 13.67 21.61 0.30 -57.10 16 20 Si 1.02 43.54 29.55 68.60 2.03 45.57 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 23 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 24 C -0.24 -10.90 9.17 22.39 0.21 -10.70 16 25 C -0.05 -1.78 9.69 22.25 0.22 -1.56 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.04 0.94 7.46 -2.39 -0.02 0.92 16 30 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.05 1.16 7.81 -2.38 -0.02 1.14 16 32 H 0.06 0.92 7.84 -2.38 -0.02 0.90 16 33 H 0.07 0.89 7.84 -2.39 -0.02 0.87 16 34 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.98 7.57 -2.39 -0.02 0.96 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.34 7.43 7.64 -89.69 -0.69 6.74 16 39 H 0.08 1.68 8.01 -2.38 -0.02 1.66 16 40 H 0.04 0.88 8.06 -2.38 -0.02 0.86 16 41 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.12 5.27 5.64 -2.91 -0.02 5.26 16 45 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -68.32 358.42 4.50 -63.81 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.28 Total: 29.01 kcal Atomic # 6 Polarization: -54.54 SS G_CDS: 4.31 Total: -50.24 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.89 Total: -73.57 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.22 Total: -14.58 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.32 4.50 -63.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094321361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.944 kcal (2) G-P(sol) polarization free energy of solvation -68.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds