Wall clock time and date at job start Tue Mar 31 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 110.05248 * 2 1 4 4 C 1.54367 * 110.04766 * 238.52520 * 2 1 3 5 5 C 1.54888 * 104.20039 * 217.09203 * 4 2 1 6 6 C 1.54891 * 102.74680 * 37.96596 * 5 4 2 7 7 C 1.53875 * 110.03038 * 121.41622 * 2 1 3 8 8 H 1.09004 * 110.03233 * 238.62341 * 7 2 1 9 9 N 1.46904 * 110.03398 * 359.97438 * 7 2 1 10 10 C 1.46898 * 111.00015 * 204.31123 * 9 7 2 11 11 C 1.50698 * 109.47185 * 180.02562 * 10 9 7 12 12 C 1.38317 * 119.96858 * 89.99683 * 11 10 9 13 13 C 1.38281 * 120.14165 * 179.74761 * 12 11 10 14 14 C 1.38120 * 120.06679 * 0.25203 * 13 12 11 15 15 C 1.38861 * 119.93162 * 0.02562 * 14 13 12 16 16 O 1.35753 * 120.06905 * 180.02562 * 15 14 13 17 17 C 1.34827 * 116.99931 * 354.46809 * 16 15 14 18 18 H 1.07999 * 120.00241 * 5.05254 * 17 16 15 19 19 C 1.38655 * 119.99607 * 185.05956 * 17 16 15 20 20 N 1.31553 * 119.99805 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00276 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47312 * 90.00419 * 21 19 17 23 23 H 1.48503 * 109.47423 * 210.00351 * 21 19 17 24 24 H 1.48505 * 109.47165 * 330.00586 * 21 19 17 25 25 C 1.38082 * 119.96289 * 270.25491 * 11 10 9 26 26 H 1.09001 * 109.47546 * 298.58256 * 1 2 3 27 27 H 1.08999 * 109.47139 * 58.58306 * 1 2 3 28 28 H 1.09007 * 109.46908 * 178.58472 * 1 2 3 29 29 H 1.08997 * 109.46913 * 181.41278 * 3 2 1 30 30 H 1.08998 * 109.47163 * 301.41318 * 3 2 1 31 31 H 1.09006 * 109.47085 * 61.41852 * 3 2 1 32 32 H 1.09003 * 110.46400 * 98.42056 * 4 2 1 33 33 H 1.08996 * 110.62368 * 335.83679 * 4 2 1 34 34 H 1.09003 * 110.75634 * 279.65931 * 5 4 2 35 35 H 1.08990 * 110.91959 * 156.35930 * 5 4 2 36 36 H 1.08997 * 110.49055 * 203.38023 * 6 5 4 37 37 H 1.09002 * 110.48024 * 80.74067 * 6 5 4 38 38 H 1.00899 * 110.99665 * 80.35734 * 9 7 2 39 39 H 1.08998 * 109.47129 * 59.99951 * 10 9 7 40 40 H 1.09003 * 109.47177 * 300.00150 * 10 9 7 41 41 H 1.08001 * 119.93128 * 0.02562 * 12 11 10 42 42 H 1.07998 * 119.97095 * 180.28034 * 13 12 11 43 43 H 1.07996 * 120.03871 * 180.02562 * 14 13 12 44 44 H 0.97003 * 120.00217 * 180.02562 * 20 19 17 45 45 H 1.08003 * 120.03828 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0592 -0.7572 -1.2368 5 6 3.3146 -1.5015 -0.7182 6 6 2.8882 -1.9406 0.7047 7 6 2.0571 -0.7536 1.2337 8 1 2.6859 -0.0951 1.8330 9 7 0.9328 -1.2459 2.0410 10 6 1.3346 -1.4392 3.4407 11 6 0.1583 -1.9442 4.2358 12 6 -0.0636 -3.3044 4.3533 13 6 -1.1389 -3.7718 5.0864 14 6 -1.9980 -2.8809 5.6995 15 6 -1.7814 -1.5146 5.5787 16 8 -2.6238 -0.6366 6.1805 17 6 -3.7146 -1.1503 6.7838 18 1 -3.8444 -2.2207 6.8445 19 6 -4.6699 -0.3042 7.3262 20 7 -5.7340 -0.8054 7.9153 21 14 -4.4452 1.5472 7.2216 22 1 -5.0677 2.0517 5.9713 23 1 -5.0934 2.1915 8.3921 24 1 -2.9958 1.8706 7.2183 25 6 -0.7001 -1.0483 4.8419 26 1 -0.3634 0.4916 0.9024 27 1 -0.3633 0.5357 -0.8770 28 1 -0.3633 -1.0274 -0.0254 29 1 3.1443 1.4262 -0.0253 30 1 1.6761 1.9622 -0.8770 31 1 1.7174 1.9471 0.9025 32 1 2.3304 -0.0557 -2.0259 33 1 1.3165 -1.4682 -1.5985 34 1 4.1717 -0.8293 -0.6743 35 1 3.5373 -2.3687 -1.3396 36 1 3.7643 -2.1028 1.3325 37 1 2.2784 -2.8428 0.6586 38 1 0.5542 -2.0967 1.6527 39 1 1.6736 -0.4901 3.8557 40 1 2.1447 -2.1669 3.4890 41 1 0.6071 -4.0030 3.8752 42 1 -1.3069 -4.8345 5.1801 43 1 -2.8374 -3.2465 6.2722 44 1 -6.4026 -0.2135 8.2944 45 1 -0.5291 0.0137 4.7460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094321392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:56 Heat of formation + Delta-G solvation = -17.690862 kcal Electronic energy + Delta-G solvation = -22878.285236 eV Core-core repulsion = 19667.506715 eV Total energy + Delta-G solvation = -3210.778521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.74733 -39.08127 -36.91364 -34.50020 -32.36062 -32.26414 -30.67320 -29.28530 -27.46618 -27.09091 -25.33497 -24.69873 -23.50791 -21.73338 -20.97951 -20.47692 -18.65975 -17.68490 -17.08904 -15.91382 -15.69262 -15.20714 -14.96559 -14.54960 -14.28228 -13.96077 -13.71458 -13.51219 -13.49126 -13.21854 -13.07425 -12.70526 -12.36552 -12.22939 -12.21794 -11.95021 -11.68419 -11.40923 -11.26599 -11.21185 -10.88614 -10.83882 -10.74697 -10.74044 -10.56850 -10.53170 -10.37486 -10.11251 -9.36318 -8.85458 -8.32190 -8.09524 -7.35085 -6.39132 -4.05845 2.06228 2.28649 3.24235 3.28257 3.42955 4.15132 4.26411 4.34961 4.46239 4.60038 4.78290 4.82518 5.11026 5.12470 5.17431 5.22150 5.24891 5.31824 5.37482 5.46684 5.48317 5.62954 5.65577 5.68777 5.78760 5.79630 5.84334 5.84878 5.87516 5.97655 6.02363 6.07485 6.14758 6.23396 6.30036 6.35015 6.56906 6.59207 6.81801 7.12092 7.15772 7.23627 7.33309 7.48068 7.62983 7.82975 8.06606 8.96497 9.59629 10.68685 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.003561 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.016746 B = 7860.074551 C = 8769.455936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.154 4.154 7 C 0.090 3.910 8 H 0.079 0.921 9 N -0.671 5.671 10 C 0.105 3.895 11 C -0.049 4.049 12 C -0.199 4.199 13 C -0.077 4.077 14 C -0.220 4.220 15 C 0.158 3.842 16 O -0.218 6.218 17 C -0.389 4.389 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.166 4.166 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.343 0.657 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.279 0.721 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.786 -0.565 -15.656 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.061 4.061 3 C -0.194 4.194 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.193 4.193 7 C -0.020 4.020 8 H 0.097 0.903 9 N -0.301 5.301 10 C -0.023 4.023 11 C -0.049 4.049 12 C -0.219 4.219 13 C -0.096 4.096 14 C -0.239 4.239 15 C 0.106 3.894 16 O -0.124 6.124 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.186 4.186 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.162 0.838 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.149 0.851 44 H 0.089 0.911 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.309 0.372 -15.373 22.415 hybrid contribution 0.391 -0.295 0.061 0.494 sum 16.700 0.077 -15.312 22.657 Atomic orbital electron populations 1.21595 0.93215 1.01671 1.01206 1.21185 0.96755 0.94700 0.93443 1.21876 1.00205 0.95455 1.01853 1.22533 0.97033 0.98821 0.97124 1.22400 0.97851 0.99706 0.96002 1.23137 1.00353 0.98866 0.96969 1.22316 0.90553 0.95209 0.93938 0.90294 1.60702 1.31148 1.36905 1.01311 1.20825 0.93756 0.99779 0.87940 1.19171 0.95650 0.92832 0.97269 1.20480 1.00844 0.94292 1.06236 1.20740 0.94211 0.98380 0.96230 1.21294 1.03188 0.92907 1.06523 1.19102 0.90367 0.88964 0.90988 1.83575 1.32505 1.34119 1.62161 1.20761 0.95934 0.95129 1.34617 0.87695 1.24456 0.93887 1.00229 0.95415 1.69647 1.09476 1.36498 1.36331 0.86185 0.79636 0.83278 0.77836 1.19855 1.20839 1.18354 1.20014 0.96405 0.99281 1.02894 0.91226 0.94307 0.92904 0.93133 0.92835 0.92373 0.91857 0.91580 0.91698 0.91922 0.91922 0.91509 0.83769 0.90689 0.94920 0.87956 0.87346 0.85090 0.91094 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 7.38 37.16 0.27 -1.04 16 2 C -0.06 -0.58 0.94 -153.33 -0.14 -0.72 16 3 C -0.14 -1.23 8.15 37.16 0.30 -0.93 16 4 C -0.12 -0.98 5.90 -25.02 -0.15 -1.13 16 5 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 6 C -0.15 -1.35 6.43 -25.07 -0.16 -1.51 16 7 C 0.09 0.91 2.86 -66.59 -0.19 0.72 16 8 H 0.08 0.82 7.35 -51.93 -0.38 0.44 16 9 N -0.67 -8.06 4.44 -106.81 -0.47 -8.53 16 10 C 0.11 1.39 5.63 -4.98 -0.03 1.36 16 11 C -0.05 -0.81 5.39 -104.65 -0.56 -1.38 16 12 C -0.20 -3.28 9.70 -39.54 -0.38 -3.66 16 13 C -0.08 -1.40 10.04 -39.61 -0.40 -1.80 16 14 C -0.22 -4.78 9.17 -39.39 -0.36 -5.14 16 15 C 0.16 3.67 6.65 -39.10 -0.26 3.41 16 16 O -0.22 -5.83 8.59 0.05 0.00 -5.83 16 17 C -0.39 -11.07 9.95 30.89 0.31 -10.76 16 18 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 19 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 20 N -0.88 -25.69 13.96 55.48 0.77 -24.92 16 21 Si 0.91 21.94 28.62 -169.99 -4.86 17.07 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.17 -3.33 9.65 -39.39 -0.38 -3.71 16 26 H 0.07 0.91 7.81 -51.93 -0.41 0.50 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.60 7.47 -51.92 -0.39 0.21 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.49 7.84 -51.93 -0.41 0.08 16 33 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.60 7.57 -51.93 -0.39 0.21 16 38 H 0.34 4.11 7.64 -39.29 -0.30 3.81 16 39 H 0.07 0.99 8.01 -51.93 -0.42 0.57 16 40 H 0.03 0.39 8.07 -51.93 -0.42 -0.03 16 41 H 0.10 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.13 3.00 5.64 -52.49 -0.30 2.70 16 44 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -28.69 357.31 -9.04 -37.73 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.46 Total: 4.81 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -2.40 Total: -25.72 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.30 Total: -33.45 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: 0.00 Total: -5.83 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.86 Total: 17.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.69 -9.04 -37.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094321392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.043 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds