Wall clock time and date at job start Tue Mar 31 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 110.05248 * 2 1 4 4 C 1.54367 * 110.04766 * 238.52520 * 2 1 3 5 5 C 1.54888 * 104.20039 * 217.09203 * 4 2 1 6 6 C 1.54891 * 102.74680 * 37.96596 * 5 4 2 7 7 C 1.53875 * 110.03038 * 121.41622 * 2 1 3 8 8 H 1.09004 * 110.03233 * 238.62341 * 7 2 1 9 9 N 1.46904 * 110.03398 * 359.97438 * 7 2 1 10 10 C 1.46898 * 111.00015 * 204.31123 * 9 7 2 11 11 C 1.50698 * 109.47185 * 180.02562 * 10 9 7 12 12 C 1.38317 * 119.96858 * 89.99683 * 11 10 9 13 13 C 1.38281 * 120.14165 * 179.74761 * 12 11 10 14 14 C 1.38120 * 120.06679 * 0.25203 * 13 12 11 15 15 C 1.38861 * 119.93162 * 0.02562 * 14 13 12 16 16 O 1.35753 * 120.06905 * 180.02562 * 15 14 13 17 17 C 1.34827 * 116.99931 * 354.46809 * 16 15 14 18 18 H 1.07999 * 120.00241 * 5.05254 * 17 16 15 19 19 C 1.38655 * 119.99607 * 185.05956 * 17 16 15 20 20 N 1.31553 * 119.99805 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00276 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47312 * 90.00419 * 21 19 17 23 23 H 1.48503 * 109.47423 * 210.00351 * 21 19 17 24 24 H 1.48505 * 109.47165 * 330.00586 * 21 19 17 25 25 C 1.38082 * 119.96289 * 270.25491 * 11 10 9 26 26 H 1.09001 * 109.47546 * 298.58256 * 1 2 3 27 27 H 1.08999 * 109.47139 * 58.58306 * 1 2 3 28 28 H 1.09007 * 109.46908 * 178.58472 * 1 2 3 29 29 H 1.08997 * 109.46913 * 181.41278 * 3 2 1 30 30 H 1.08998 * 109.47163 * 301.41318 * 3 2 1 31 31 H 1.09006 * 109.47085 * 61.41852 * 3 2 1 32 32 H 1.09003 * 110.46400 * 98.42056 * 4 2 1 33 33 H 1.08996 * 110.62368 * 335.83679 * 4 2 1 34 34 H 1.09003 * 110.75634 * 279.65931 * 5 4 2 35 35 H 1.08990 * 110.91959 * 156.35930 * 5 4 2 36 36 H 1.08997 * 110.49055 * 203.38023 * 6 5 4 37 37 H 1.09002 * 110.48024 * 80.74067 * 6 5 4 38 38 H 1.00899 * 110.99665 * 80.35734 * 9 7 2 39 39 H 1.08998 * 109.47129 * 59.99951 * 10 9 7 40 40 H 1.09003 * 109.47177 * 300.00150 * 10 9 7 41 41 H 1.08001 * 119.93128 * 0.02562 * 12 11 10 42 42 H 1.07998 * 119.97095 * 180.28034 * 13 12 11 43 43 H 1.07996 * 120.03871 * 180.02562 * 14 13 12 44 44 H 0.97003 * 120.00217 * 180.02562 * 20 19 17 45 45 H 1.08003 * 120.03828 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0592 -0.7572 -1.2368 5 6 3.3146 -1.5015 -0.7182 6 6 2.8882 -1.9406 0.7047 7 6 2.0571 -0.7536 1.2337 8 1 2.6859 -0.0951 1.8330 9 7 0.9328 -1.2459 2.0410 10 6 1.3346 -1.4392 3.4407 11 6 0.1583 -1.9442 4.2358 12 6 -0.0636 -3.3044 4.3533 13 6 -1.1389 -3.7718 5.0864 14 6 -1.9980 -2.8809 5.6995 15 6 -1.7814 -1.5146 5.5787 16 8 -2.6238 -0.6366 6.1805 17 6 -3.7146 -1.1503 6.7838 18 1 -3.8444 -2.2207 6.8445 19 6 -4.6699 -0.3042 7.3262 20 7 -5.7340 -0.8054 7.9153 21 14 -4.4452 1.5472 7.2216 22 1 -5.0677 2.0517 5.9713 23 1 -5.0934 2.1915 8.3921 24 1 -2.9958 1.8706 7.2183 25 6 -0.7001 -1.0483 4.8419 26 1 -0.3634 0.4916 0.9024 27 1 -0.3633 0.5357 -0.8770 28 1 -0.3633 -1.0274 -0.0254 29 1 3.1443 1.4262 -0.0253 30 1 1.6761 1.9622 -0.8770 31 1 1.7174 1.9471 0.9025 32 1 2.3304 -0.0557 -2.0259 33 1 1.3165 -1.4682 -1.5985 34 1 4.1717 -0.8293 -0.6743 35 1 3.5373 -2.3687 -1.3396 36 1 3.7643 -2.1028 1.3325 37 1 2.2784 -2.8428 0.6586 38 1 0.5542 -2.0967 1.6527 39 1 1.6736 -0.4901 3.8557 40 1 2.1447 -2.1669 3.4890 41 1 0.6071 -4.0030 3.8752 42 1 -1.3069 -4.8345 5.1801 43 1 -2.8374 -3.2465 6.2722 44 1 -6.4026 -0.2135 8.2944 45 1 -0.5291 0.0137 4.7460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094321392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:56 Heat of formation + Delta-G solvation = -32.680718 kcal Electronic energy + Delta-G solvation = -22878.935245 eV Core-core repulsion = 19667.506715 eV Total energy + Delta-G solvation = -3211.428530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96026 -40.35821 -38.53336 -35.60681 -34.44476 -32.97831 -32.01763 -30.89452 -28.27326 -28.06035 -27.22526 -25.77994 -24.44209 -23.28043 -22.09390 -21.64133 -19.75854 -19.40641 -18.75519 -16.93436 -16.69153 -16.64458 -16.48305 -15.77547 -15.72707 -15.35387 -15.16613 -14.64498 -14.60537 -14.25200 -14.21413 -14.05722 -13.83870 -13.73178 -13.26997 -13.03002 -12.81635 -12.75428 -12.41891 -12.39826 -12.34296 -12.14143 -11.89958 -11.84115 -11.51754 -11.41145 -11.29985 -11.26137 -11.15372 -10.91239 -9.69719 -9.20152 -9.01669 -8.50346 -6.22804 0.51319 0.70220 1.30239 1.34708 1.51093 2.27780 2.74355 2.98478 3.15841 3.45285 3.65336 3.77437 4.01317 4.03915 4.11589 4.31139 4.41706 4.42342 4.46746 4.51349 4.58000 4.60874 4.63515 4.68987 4.74708 4.85037 4.92885 5.00453 5.01893 5.07294 5.10991 5.17374 5.22206 5.26118 5.29688 5.39645 5.40361 5.49819 5.58848 5.67620 5.68645 5.74927 5.79625 5.92360 6.20550 6.29223 6.54951 6.84417 7.60163 8.61513 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.003561 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.016746 B = 7860.074551 C = 8769.455936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.060 4.060 3 C -0.135 4.135 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.150 4.150 7 C 0.091 3.909 8 H 0.077 0.923 9 N -0.681 5.681 10 C 0.112 3.888 11 C -0.037 4.037 12 C -0.174 4.174 13 C -0.076 4.076 14 C -0.240 4.240 15 C 0.118 3.882 16 O -0.248 6.248 17 C -0.399 4.399 18 H 0.081 0.919 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.266 1.266 24 H -0.264 1.264 25 C -0.171 4.171 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.344 0.656 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.106 0.894 44 H 0.285 0.715 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.967 -0.913 -17.925 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.061 4.061 3 C -0.192 4.192 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.189 4.189 7 C -0.019 4.019 8 H 0.095 0.905 9 N -0.311 5.311 10 C -0.016 4.016 11 C -0.038 4.038 12 C -0.192 4.192 13 C -0.094 4.094 14 C -0.259 4.259 15 C 0.070 3.930 16 O -0.155 6.155 17 C -0.475 4.475 18 H 0.098 0.902 19 C -0.188 4.188 20 N -0.565 5.565 21 Si 0.792 3.208 22 H -0.191 1.191 23 H -0.190 1.190 24 H -0.189 1.189 25 C -0.191 4.191 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.164 0.836 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.526 0.000 -17.667 26.332 hybrid contribution -0.372 -0.382 0.581 0.788 sum 19.154 -0.381 -17.086 25.670 Atomic orbital electron populations 1.21535 0.94584 1.01024 1.00150 1.21194 0.95538 0.95260 0.94108 1.21859 1.00933 0.94994 1.01439 1.22499 0.97282 0.98831 0.96600 1.22390 0.97596 1.00094 0.95442 1.23085 1.00224 0.98013 0.97561 1.22347 0.90038 0.95815 0.93695 0.90470 1.60644 1.32441 1.37124 1.00919 1.20773 0.92387 1.00411 0.88036 1.19619 0.95573 0.92725 0.95881 1.21008 0.99784 0.94837 1.03608 1.21102 0.93638 0.99429 0.95212 1.21318 1.03763 0.93198 1.07632 1.19642 0.91229 0.89556 0.92598 1.83517 1.32863 1.34936 1.64225 1.20711 0.97158 0.94366 1.35260 0.90176 1.25257 0.93573 1.04728 0.95222 1.69726 1.10571 1.38133 1.38095 0.85238 0.79188 0.77859 0.78551 1.19134 1.19021 1.18880 1.20250 0.95995 1.00177 1.02688 0.93688 0.93849 0.93376 0.91953 0.92379 0.93671 0.91088 0.91837 0.91034 0.90989 0.91260 0.91518 0.83607 0.90656 0.92435 0.83540 0.84238 0.87621 0.90577 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 7.38 71.98 0.53 -1.88 16 2 C -0.06 -1.02 0.94 -51.42 -0.05 -1.07 16 3 C -0.13 -2.16 8.15 71.98 0.59 -1.58 16 4 C -0.11 -1.58 5.90 31.70 0.19 -1.39 16 5 C -0.12 -1.40 6.91 31.89 0.22 -1.18 16 6 C -0.15 -2.05 6.43 31.67 0.20 -1.85 16 7 C 0.09 1.56 2.86 45.64 0.13 1.70 16 8 H 0.08 1.38 7.35 -2.39 -0.02 1.36 16 9 N -0.68 -14.51 4.44 -491.83 -2.18 -16.69 16 10 C 0.11 2.57 5.63 85.56 0.48 3.05 16 11 C -0.04 -1.15 5.39 -19.88 -0.11 -1.26 16 12 C -0.17 -5.03 9.70 22.30 0.22 -4.82 16 13 C -0.08 -2.60 10.04 22.25 0.22 -2.37 16 14 C -0.24 -10.73 9.17 22.39 0.21 -10.53 16 15 C 0.12 5.71 6.65 22.58 0.15 5.86 16 16 O -0.25 -13.89 8.59 -22.75 -0.20 -14.09 16 17 C -0.40 -24.09 9.95 67.92 0.68 -23.41 16 18 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 19 C 0.01 0.61 5.49 84.83 0.47 1.08 16 20 N -0.92 -56.20 13.96 21.61 0.30 -55.89 16 21 Si 0.97 46.62 28.62 68.60 1.96 48.58 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 25 C -0.17 -6.82 9.65 22.39 0.22 -6.61 16 26 H 0.04 1.15 7.81 -2.39 -0.02 1.13 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 1.03 7.47 -2.38 -0.02 1.01 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.07 0.88 7.84 -2.39 -0.02 0.87 16 33 H 0.06 0.92 7.85 -2.39 -0.02 0.90 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.94 7.57 -2.39 -0.02 0.92 16 38 H 0.34 7.16 7.64 -89.69 -0.69 6.47 16 39 H 0.08 1.77 8.01 -2.39 -0.02 1.75 16 40 H 0.06 1.08 8.07 -2.39 -0.02 1.06 16 41 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 42 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.11 5.22 5.64 -2.91 -0.02 5.20 16 44 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 45 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -65.75 357.31 4.50 -61.25 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.28 Total: 23.10 kcal Atomic # 6 Polarization: -50.60 SS G_CDS: 4.34 Total: -46.26 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -1.88 Total: -72.58 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.20 Total: -14.09 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.96 Total: 48.58 kcal Total: -65.75 4.50 -61.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094321392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.571 kcal (2) G-P(sol) polarization free energy of solvation -65.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds