Wall clock time and date at job start Tue Mar 31 2020 05:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 110.05487 * 2 1 4 4 C 1.54267 * 110.03163 * 238.58548 * 2 1 3 5 5 C 1.54886 * 104.19286 * 264.32636 * 4 2 1 6 6 C 1.54894 * 102.75069 * 322.05550 * 5 4 2 7 7 C 1.53870 * 110.03156 * 121.41937 * 2 1 3 8 8 H 1.09005 * 110.03384 * 359.94631 * 7 2 1 9 9 N 1.46903 * 110.02931 * 238.56802 * 7 2 1 10 10 C 1.46904 * 111.00002 * 164.61324 * 9 7 2 11 11 C 1.50699 * 109.47437 * 179.97438 * 10 9 7 12 12 C 1.38332 * 119.96426 * 89.99811 * 11 10 9 13 13 C 1.38268 * 120.13631 * 180.02562 * 12 11 10 14 14 C 1.38128 * 120.07313 * 359.97438 * 13 12 11 15 15 C 1.38856 * 119.92602 * 359.97438 * 14 13 12 16 16 O 1.35755 * 120.06805 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99564 * 5.43421 * 16 15 14 18 18 H 1.07996 * 120.00134 * 355.06807 * 17 16 15 19 19 C 1.38660 * 119.99819 * 175.07137 * 17 16 15 20 20 N 1.31554 * 119.99891 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00240 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47173 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.46783 * 60.00287 * 21 19 17 24 24 H 1.48493 * 109.47458 * 300.00470 * 21 19 17 25 25 C 1.38076 * 119.96730 * 270.25801 * 11 10 9 26 26 H 1.09003 * 109.47006 * 298.58268 * 1 2 3 27 27 H 1.08999 * 109.47169 * 58.58129 * 1 2 3 28 28 H 1.08998 * 109.46946 * 178.58264 * 1 2 3 29 29 H 1.08999 * 109.46903 * 175.09514 * 3 2 1 30 30 H 1.09000 * 109.46832 * 295.09346 * 3 2 1 31 31 H 1.08998 * 109.46872 * 55.09739 * 3 2 1 32 32 H 1.08998 * 110.48230 * 23.00165 * 4 2 1 33 33 H 1.08990 * 110.48542 * 145.51294 * 4 2 1 34 34 H 1.09001 * 110.75888 * 80.36951 * 5 4 2 35 35 H 1.09001 * 110.75180 * 203.74082 * 5 4 2 36 36 H 1.08994 * 110.48244 * 279.26768 * 6 5 4 37 37 H 1.09000 * 110.48539 * 156.61985 * 6 5 4 38 38 H 1.00903 * 111.00193 * 40.66313 * 9 7 2 39 39 H 1.09007 * 109.47190 * 59.99897 * 10 9 7 40 40 H 1.09002 * 109.47258 * 299.99994 * 10 9 7 41 41 H 1.08000 * 119.93007 * 359.97438 * 12 11 10 42 42 H 1.08007 * 119.96629 * 179.97438 * 13 12 11 43 43 H 1.07993 * 120.03651 * 179.97438 * 14 13 12 44 44 H 0.97003 * 120.00332 * 0.02562 * 20 19 17 45 45 H 1.07999 * 120.03289 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0548 1.4373 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 2.3281 -2.1901 -0.7192 6 6 2.8875 -1.9407 0.7035 7 6 2.0571 -0.7536 1.2337 8 1 1.2229 -1.1185 1.8329 9 7 2.9057 0.1335 2.0406 10 6 3.1217 -0.4225 3.3831 11 6 3.9950 0.5124 4.1795 12 6 3.4204 1.5154 4.9394 13 6 4.2183 2.3756 5.6711 14 6 5.5922 2.2353 5.6457 15 6 6.1719 1.2288 4.8848 16 8 7.5219 1.0887 4.8574 17 6 8.2367 1.8852 5.6775 18 1 7.7392 2.6482 6.2579 19 6 9.6104 1.7249 5.7758 20 7 10.2163 0.7952 5.0692 21 14 10.6009 2.8288 6.9114 22 1 12.0365 2.4570 6.8349 23 1 10.1197 2.6629 8.3065 24 1 10.4338 4.2444 6.4953 25 6 5.3680 0.3704 4.1458 26 1 -0.3633 0.4917 0.9024 27 1 -0.3633 0.5357 -0.8770 28 1 -0.3633 -1.0273 -0.0254 29 1 3.1412 1.4274 0.0879 30 1 1.7699 1.9280 -0.9307 31 1 1.6270 1.9802 0.8428 32 1 1.3061 -0.7695 -2.0254 33 1 2.9798 -0.2986 -1.5980 34 1 1.4031 -2.7651 -0.6751 35 1 3.0675 -2.6930 -1.3424 36 1 3.9440 -1.6767 0.6570 37 1 2.7401 -2.8197 1.3309 38 1 2.5125 1.0613 2.0925 39 1 3.6105 -1.3933 3.3000 40 1 2.1620 -0.5408 3.8861 41 1 2.3464 1.6274 4.9605 42 1 3.7668 3.1580 6.2631 43 1 6.2148 2.9077 6.2171 44 1 9.7021 0.2221 4.4791 45 1 5.8162 -0.4100 3.5487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094321393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:59 Heat of formation + Delta-G solvation = -22.763121 kcal Electronic energy + Delta-G solvation = -22847.603311 eV Core-core repulsion = 19636.604840 eV Total energy + Delta-G solvation = -3210.998471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.76689 -39.02343 -36.86281 -34.45658 -32.38179 -32.23871 -30.63071 -29.02123 -27.64616 -27.06885 -25.21714 -24.53517 -23.56018 -21.69495 -20.90614 -20.37020 -18.63928 -17.94973 -16.83534 -15.94389 -15.71823 -15.27127 -14.93717 -14.91265 -14.28244 -13.86796 -13.76000 -13.60973 -13.44920 -13.36180 -13.14940 -12.90806 -12.50882 -12.16400 -11.92733 -11.70902 -11.40626 -11.21401 -11.13106 -10.99472 -10.87362 -10.76127 -10.73760 -10.64599 -10.60677 -10.45680 -10.27657 -10.22608 -9.37896 -8.75753 -8.33823 -8.08382 -7.28082 -6.73955 -4.03170 2.09156 2.33292 3.25199 3.30125 3.46825 4.13684 4.20333 4.35443 4.44807 4.62688 4.81804 5.00436 5.14018 5.17070 5.18173 5.20734 5.29150 5.32202 5.39211 5.49441 5.53312 5.58425 5.67013 5.68837 5.77767 5.78779 5.84797 5.87272 5.88660 5.95771 6.01793 6.10970 6.14972 6.18093 6.30921 6.33986 6.35758 6.62890 6.86955 7.12748 7.16728 7.27480 7.34318 7.51512 7.59562 7.75357 8.43493 8.95581 9.65066 10.70224 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024871 B = 0.003188 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.536255 B = 8780.564574 C = 9322.652595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.111 4.111 5 C -0.124 4.124 6 C -0.117 4.117 7 C 0.090 3.910 8 H 0.040 0.960 9 N -0.676 5.676 10 C 0.104 3.896 11 C -0.045 4.045 12 C -0.207 4.207 13 C -0.076 4.076 14 C -0.229 4.229 15 C 0.155 3.845 16 O -0.203 6.203 17 C -0.472 4.472 18 H 0.083 0.917 19 C 0.010 3.990 20 N -0.882 5.882 21 Si 1.095 2.905 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.169 4.169 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.345 0.655 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.282 0.718 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.186 -2.032 -8.573 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.148 4.148 5 C -0.162 4.162 6 C -0.155 4.155 7 C -0.020 4.020 8 H 0.058 0.942 9 N -0.310 5.310 10 C -0.024 4.024 11 C -0.046 4.046 12 C -0.226 4.226 13 C -0.094 4.094 14 C -0.249 4.249 15 C 0.102 3.898 16 O -0.108 6.108 17 C -0.548 4.548 18 H 0.100 0.900 19 C -0.196 4.196 20 N -0.514 5.514 21 Si 0.920 3.080 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.188 4.188 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.166 0.834 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.092 0.908 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.859 -2.121 -8.407 18.074 hybrid contribution -2.596 -0.009 0.051 2.596 sum -18.455 -2.130 -8.356 20.370 Atomic orbital electron populations 1.21931 0.94656 1.01518 1.01551 1.21255 0.94805 0.95975 0.94841 1.21847 1.02825 0.94409 1.00731 1.22421 1.00863 0.95227 0.96329 1.22443 1.00458 0.96684 0.96573 1.22448 1.00999 0.96622 0.95418 1.22216 0.93287 0.93126 0.93335 0.94166 1.60838 1.51253 1.05596 1.13276 1.20824 0.96689 0.97230 0.87646 1.19169 0.92798 0.96030 0.96615 1.20435 0.98115 0.99695 1.04358 1.20701 0.93245 0.97759 0.97687 1.21186 0.95022 1.02415 1.06239 1.19213 0.84369 0.92948 0.93268 1.83670 1.12741 1.57290 1.57062 1.22192 0.92101 1.16111 1.24409 0.89973 1.26518 0.92757 0.99945 1.00337 1.70567 1.39575 1.17517 1.23755 0.83113 0.76172 0.74303 0.74455 1.19791 1.20781 1.20760 1.19994 0.91929 1.02221 1.04694 0.92953 0.92583 0.92713 0.90524 0.93077 0.93023 0.91988 0.91191 0.91952 0.91593 0.90074 0.92280 0.83379 0.90633 0.95070 0.88060 0.87508 0.85586 0.90793 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.15 37.16 0.30 -0.85 16 2 C -0.07 -0.66 0.94 -153.39 -0.14 -0.80 16 3 C -0.14 -1.42 7.09 37.16 0.26 -1.16 16 4 C -0.11 -1.01 5.90 -25.07 -0.15 -1.16 16 5 C -0.12 -1.13 6.91 -24.74 -0.17 -1.30 16 6 C -0.12 -1.28 6.01 -25.07 -0.15 -1.43 16 7 C 0.09 0.99 2.86 -66.60 -0.19 0.80 16 8 H 0.04 0.44 7.50 -51.93 -0.39 0.05 16 9 N -0.68 -8.88 5.25 -106.80 -0.56 -9.44 16 10 C 0.10 1.51 5.63 -4.97 -0.03 1.48 16 11 C -0.05 -0.82 5.39 -104.65 -0.56 -1.38 16 12 C -0.21 -3.60 9.70 -39.54 -0.38 -3.98 16 13 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 14 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 15 C 0.15 3.82 6.65 -39.11 -0.26 3.56 16 16 O -0.20 -5.84 9.16 0.03 0.00 -5.84 16 17 C -0.47 -13.51 9.49 30.89 0.29 -13.22 16 18 H 0.08 2.21 5.20 -52.49 -0.27 1.94 16 19 C 0.01 0.27 5.49 -17.51 -0.10 0.18 16 20 N -0.88 -26.69 13.70 55.48 0.76 -25.93 16 21 Si 1.10 23.97 29.92 -169.99 -5.09 18.89 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 C -0.17 -3.63 9.65 -39.40 -0.38 -4.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.92 7.50 -51.93 -0.39 0.53 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.51 7.02 -51.93 -0.36 0.14 16 32 H 0.06 0.50 7.84 -51.93 -0.41 0.09 16 33 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.34 4.44 6.12 -39.29 -0.24 4.20 16 39 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 40 H 0.03 0.41 8.04 -51.93 -0.42 0.00 16 41 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 43 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 44 H 0.28 8.74 7.97 -40.82 -0.33 8.41 16 45 H 0.11 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 356.02 15.07 5.37 5.37 Total: -1.00 -30.19 356.02 -9.29 -39.48 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.35 Total: 8.03 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: -2.42 Total: -30.56 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.20 Total: -35.37 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: 0.00 Total: -5.84 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.09 Total: 18.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.19 -9.29 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094321393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.716 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds