Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.52997 * 109.47212 * 270.02160 * 7 6 5 9 9 C 1.50705 * 109.47037 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99969 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99941 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00147 * 0.02562 * 11 9 8 13 13 C 1.52993 * 109.47119 * 89.99691 * 12 11 9 14 14 C 1.46497 * 119.99886 * 180.02562 * 11 9 8 15 15 C 1.50698 * 109.47350 * 90.00092 * 14 11 9 16 16 H 1.07994 * 119.99932 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00138 * 180.02562 * 15 14 11 18 18 N 1.31520 * 120.00187 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00181 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47443 * 89.99691 * 19 17 15 21 21 H 1.48500 * 109.47421 * 209.99998 * 19 17 15 22 22 H 1.48505 * 109.46972 * 329.99930 * 19 17 15 23 23 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 24 24 C 1.38230 * 119.99880 * 359.95582 * 23 6 5 25 25 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 30 30 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 31 31 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 32 32 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 33 33 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 34 34 H 1.09002 * 109.47611 * 299.99724 * 8 7 6 35 35 H 1.09001 * 109.47289 * 60.00082 * 8 7 6 36 36 H 1.08994 * 109.47441 * 210.00149 * 12 11 9 37 37 H 1.09000 * 109.46776 * 329.99875 * 12 11 9 38 38 H 1.09006 * 109.47359 * 60.00037 * 13 12 11 39 39 H 1.09000 * 109.47573 * 180.02562 * 13 12 11 40 40 H 1.09004 * 109.47599 * 299.99984 * 13 12 11 41 41 H 1.09000 * 109.47086 * 210.00221 * 14 11 9 42 42 H 1.09004 * 109.47125 * 329.99682 * 14 11 9 43 43 H 0.96996 * 120.00094 * 180.02562 * 18 17 15 44 44 H 1.08008 * 119.99983 * 179.97438 * 23 6 5 45 45 H 1.08007 * 119.99843 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9867 5.4480 0.0001 9 6 5.4890 6.8689 -0.0005 10 8 4.7008 7.7907 -0.0004 11 7 6.8141 7.1151 -0.0001 12 6 7.7661 6.0017 0.0004 13 6 8.0979 5.6138 -1.4419 14 6 7.3023 8.4963 -0.0001 15 6 7.4693 8.9701 1.4207 16 1 7.2356 8.3085 2.2416 17 6 7.9206 10.2484 1.6726 18 7 8.2058 11.0541 0.6730 19 14 8.1282 10.8355 3.4338 20 1 9.5035 10.5250 3.9002 21 1 7.9036 12.3020 3.4965 22 1 7.1427 10.1460 4.3048 23 6 2.7240 3.3755 1.1972 24 6 2.2628 2.0724 1.1971 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0927 1.5598 -2.1325 31 1 2.9047 3.8844 -2.1324 32 1 3.0933 5.9619 -0.8899 33 1 3.0934 5.9618 0.8901 34 1 5.3501 4.9342 0.8901 35 1 5.3500 4.9342 -0.8899 36 1 8.6784 6.3038 0.5145 37 1 7.3255 5.1472 0.5142 38 1 8.5384 6.4683 -1.9558 39 1 8.8059 4.7851 -1.4416 40 1 7.1856 5.3115 -1.9560 41 1 8.2627 8.5422 -0.5136 42 1 6.5845 9.1355 -0.5143 43 1 8.5236 11.9532 0.8502 44 1 2.9041 3.8846 2.1326 45 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -40.633691 kcal Electronic energy + Delta-G solvation = -22352.292235 eV Core-core repulsion = 19140.518838 eV Total energy + Delta-G solvation = -3211.773397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.74134 -38.91912 -35.45073 -34.99999 -32.90060 -32.27796 -30.97701 -30.05999 -29.02507 -27.04593 -24.92780 -23.09864 -22.91416 -22.77960 -21.79974 -20.41296 -18.19691 -16.71652 -16.36406 -15.90842 -15.86913 -15.41410 -15.05117 -14.75775 -14.28618 -13.94734 -13.87715 -13.49229 -13.34692 -13.21717 -13.16030 -12.82542 -12.35668 -12.07938 -12.05057 -11.79763 -11.65780 -11.49128 -11.41190 -11.15211 -11.03363 -10.92079 -10.83936 -10.77287 -10.57864 -10.46141 -10.10445 -9.60728 -8.97111 -8.90463 -8.48475 -8.41369 -7.61805 -6.02213 -4.06741 1.27341 1.35476 3.31005 3.37527 3.41279 3.50485 3.65672 4.02228 4.46406 4.56227 4.64886 4.86146 4.93729 4.95289 5.09895 5.25973 5.29087 5.29996 5.32907 5.34979 5.39576 5.46846 5.49626 5.62331 5.66484 5.72684 5.75156 5.86158 5.89315 5.94878 6.02132 6.08926 6.16083 6.26406 6.36800 6.39168 6.52262 6.52634 6.68823 6.97203 7.11083 7.48086 7.59611 7.94696 8.26642 8.48250 8.93230 9.15295 9.58339 11.05850 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026036 B = 0.002941 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.156864 B = 9516.858934 C = 9956.713849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.077 4.077 7 C -0.067 4.067 8 C -0.133 4.133 9 C 0.504 3.496 10 O -0.544 6.544 11 N -0.599 5.599 12 C 0.107 3.893 13 C -0.169 4.169 14 C 0.246 3.754 15 C -0.524 4.524 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.114 4.114 24 C -0.117 4.117 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.031 0.969 42 H 0.042 0.958 43 H 0.263 0.737 44 H 0.122 0.878 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.379 -22.170 -3.047 24.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.077 4.077 7 C -0.104 4.104 8 C -0.173 4.173 9 C 0.290 3.710 10 O -0.422 6.422 11 N -0.330 5.330 12 C -0.017 4.017 13 C -0.227 4.227 14 C 0.126 3.874 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.132 4.132 24 C -0.135 4.135 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.140 0.860 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.710 -21.469 -3.090 23.765 hybrid contribution 0.343 0.382 0.969 1.097 sum -9.367 -21.087 -2.120 23.171 Atomic orbital electron populations 1.21751 0.94873 1.01508 1.02270 1.20517 0.96082 0.92870 1.02626 1.19846 1.00006 0.96191 0.93308 1.20978 1.00284 0.94916 0.97342 1.21076 0.99669 0.94692 0.97791 1.20022 0.98302 0.96310 0.93079 1.20360 0.94040 0.91516 1.04520 1.21689 0.96033 0.95903 1.03649 1.20362 0.82793 0.90515 0.77282 1.90663 1.54857 1.46463 1.50212 1.48267 1.04658 1.08930 1.71192 1.21396 0.94527 0.89572 0.96245 1.22217 1.01192 1.01440 0.97864 1.19253 0.94946 0.75809 0.97367 1.21438 1.44065 0.98452 0.92355 0.92531 1.24943 0.95421 0.96438 0.97393 1.69936 1.45212 1.07616 1.30693 0.86503 0.78266 0.77963 0.84725 1.20672 1.21100 1.19908 1.21104 0.99469 0.94712 0.97882 1.20988 1.00190 0.94932 0.97370 0.92577 0.92559 0.92563 0.91214 0.91225 0.86407 0.86049 0.90296 0.90175 0.89562 0.89648 0.90096 0.91707 0.92105 0.92251 0.93062 0.95129 0.93950 0.92759 0.85968 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.08 -0.62 6.06 -27.89 -0.17 -0.78 16 3 C -0.09 -0.91 5.13 -104.63 -0.54 -1.45 16 4 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 5 C -0.11 -1.28 9.70 -39.59 -0.38 -1.66 16 6 C -0.08 -0.95 5.13 -104.62 -0.54 -1.48 16 7 C -0.07 -0.95 4.63 -27.88 -0.13 -1.08 16 8 C -0.13 -1.98 4.23 -27.88 -0.12 -2.10 16 9 C 0.50 10.50 7.67 -10.98 -0.08 10.42 16 10 O -0.54 -13.76 15.56 5.55 0.09 -13.67 16 11 N -0.60 -12.77 2.46 -175.07 -0.43 -13.20 16 12 C 0.11 1.74 5.93 -4.05 -0.02 1.71 16 13 C -0.17 -2.30 10.24 37.15 0.38 -1.92 16 14 C 0.25 6.50 5.16 -5.20 -0.03 6.47 16 15 C -0.52 -15.03 9.39 -34.44 -0.32 -15.36 16 16 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 19 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.11 -1.31 9.70 -39.58 -0.38 -1.69 16 24 C -0.12 -1.20 9.70 -39.59 -0.38 -1.58 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 33 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16 34 H 0.09 1.18 7.40 -51.93 -0.38 0.80 16 35 H 0.09 1.12 7.19 -51.93 -0.37 0.75 16 36 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 37 H 0.06 0.89 6.44 -51.93 -0.33 0.55 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 41 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 42 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 45 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -33.08 373.04 -9.56 -42.63 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -7.72 Total: -1.22 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -2.83 Total: -11.06 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.31 Total: -39.35 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.08 -9.56 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.001 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds