Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.52997 * 109.47212 * 270.02160 * 7 6 5 9 9 C 1.50705 * 109.47037 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99969 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99941 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00147 * 0.02562 * 11 9 8 13 13 C 1.52993 * 109.47119 * 89.99691 * 12 11 9 14 14 C 1.46497 * 119.99886 * 180.02562 * 11 9 8 15 15 C 1.50698 * 109.47350 * 90.00092 * 14 11 9 16 16 H 1.07994 * 119.99932 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00138 * 180.02562 * 15 14 11 18 18 N 1.31520 * 120.00187 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00181 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47443 * 89.99691 * 19 17 15 21 21 H 1.48500 * 109.47421 * 209.99998 * 19 17 15 22 22 H 1.48505 * 109.46972 * 329.99930 * 19 17 15 23 23 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 24 24 C 1.38230 * 119.99880 * 359.95582 * 23 6 5 25 25 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 30 30 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 31 31 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 32 32 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 33 33 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 34 34 H 1.09002 * 109.47611 * 299.99724 * 8 7 6 35 35 H 1.09001 * 109.47289 * 60.00082 * 8 7 6 36 36 H 1.08994 * 109.47441 * 210.00149 * 12 11 9 37 37 H 1.09000 * 109.46776 * 329.99875 * 12 11 9 38 38 H 1.09006 * 109.47359 * 60.00037 * 13 12 11 39 39 H 1.09000 * 109.47573 * 180.02562 * 13 12 11 40 40 H 1.09004 * 109.47599 * 299.99984 * 13 12 11 41 41 H 1.09000 * 109.47086 * 210.00221 * 14 11 9 42 42 H 1.09004 * 109.47125 * 329.99682 * 14 11 9 43 43 H 0.96996 * 120.00094 * 180.02562 * 18 17 15 44 44 H 1.08008 * 119.99983 * 179.97438 * 23 6 5 45 45 H 1.08007 * 119.99843 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9867 5.4480 0.0001 9 6 5.4890 6.8689 -0.0005 10 8 4.7008 7.7907 -0.0004 11 7 6.8141 7.1151 -0.0001 12 6 7.7661 6.0017 0.0004 13 6 8.0979 5.6138 -1.4419 14 6 7.3023 8.4963 -0.0001 15 6 7.4693 8.9701 1.4207 16 1 7.2356 8.3085 2.2416 17 6 7.9206 10.2484 1.6726 18 7 8.2058 11.0541 0.6730 19 14 8.1282 10.8355 3.4338 20 1 9.5035 10.5250 3.9002 21 1 7.9036 12.3020 3.4965 22 1 7.1427 10.1460 4.3048 23 6 2.7240 3.3755 1.1972 24 6 2.2628 2.0724 1.1971 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0927 1.5598 -2.1325 31 1 2.9047 3.8844 -2.1324 32 1 3.0933 5.9619 -0.8899 33 1 3.0934 5.9618 0.8901 34 1 5.3501 4.9342 0.8901 35 1 5.3500 4.9342 -0.8899 36 1 8.6784 6.3038 0.5145 37 1 7.3255 5.1472 0.5142 38 1 8.5384 6.4683 -1.9558 39 1 8.8059 4.7851 -1.4416 40 1 7.1856 5.3115 -1.9560 41 1 8.2627 8.5422 -0.5136 42 1 6.5845 9.1355 -0.5143 43 1 8.5236 11.9532 0.8502 44 1 2.9041 3.8846 2.1326 45 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -57.864889 kcal Electronic energy + Delta-G solvation = -22353.039436 eV Core-core repulsion = 19140.518838 eV Total energy + Delta-G solvation = -3212.520597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91960 -40.21534 -37.02222 -36.01143 -34.92249 -33.35032 -31.76775 -31.59936 -30.12798 -28.76652 -26.18208 -24.71085 -24.08413 -23.57452 -23.02012 -21.25110 -19.81097 -18.64237 -18.01324 -17.20680 -16.85576 -16.77727 -16.26575 -16.05184 -15.86122 -14.89532 -14.77453 -14.61284 -14.46724 -14.37376 -14.17442 -14.03318 -13.77170 -13.52429 -13.30450 -13.22085 -13.05009 -12.71663 -12.61413 -12.50344 -12.35387 -12.28120 -12.14694 -11.94649 -11.75915 -11.71448 -11.61607 -11.57272 -10.65121 -10.59203 -9.77191 -9.43463 -9.35876 -8.23197 -6.38263 0.44725 0.55370 1.35090 1.38347 1.48712 1.85457 2.30867 2.45591 2.88300 3.05887 3.61995 3.90795 3.93991 4.09944 4.11157 4.14749 4.20880 4.30664 4.37520 4.44293 4.55778 4.60016 4.63480 4.66234 4.70766 4.75851 4.94173 4.98029 5.00482 5.04904 5.10538 5.12458 5.13467 5.22388 5.26404 5.28695 5.39262 5.42362 5.57699 5.58128 5.78048 5.80099 5.86551 6.06186 6.17628 6.69410 6.81659 7.27663 7.50191 8.83892 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026036 B = 0.002941 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.156864 B = 9516.858934 C = 9956.713849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.091 4.091 7 C -0.059 4.059 8 C -0.114 4.114 9 C 0.494 3.506 10 O -0.600 6.600 11 N -0.605 5.605 12 C 0.100 3.900 13 C -0.161 4.161 14 C 0.261 3.739 15 C -0.542 4.542 16 H 0.052 0.948 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.969 3.031 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.273 1.273 23 C -0.124 4.124 24 C -0.122 4.122 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.021 0.979 42 H -0.005 1.005 43 H 0.267 0.733 44 H 0.123 0.877 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 -25.358 -2.276 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.091 4.091 7 C -0.097 4.097 8 C -0.154 4.154 9 C 0.283 3.717 10 O -0.482 6.482 11 N -0.336 5.336 12 C -0.022 4.022 13 C -0.219 4.219 14 C 0.139 3.861 15 C -0.580 4.580 16 H 0.071 0.929 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.793 3.207 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.198 1.198 23 C -0.142 4.142 24 C -0.140 4.140 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.156 0.844 31 H 0.146 0.854 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.057 0.943 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.013 0.987 43 H 0.076 0.924 44 H 0.141 0.859 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.622 -24.711 -2.326 26.620 hybrid contribution 0.290 1.324 0.683 1.518 sum -9.332 -23.387 -1.643 25.234 Atomic orbital electron populations 1.21743 0.94467 1.02335 1.01768 1.20574 0.96318 0.91404 1.03683 1.20194 0.98808 0.97305 0.92967 1.21245 0.99645 0.94484 0.98483 1.21217 0.99756 0.95348 0.97618 1.19814 1.00119 0.95081 0.94070 1.20204 0.93567 0.92965 1.02944 1.21642 0.96389 0.91512 1.05810 1.21446 0.82021 0.92565 0.75655 1.90629 1.56188 1.48797 1.52590 1.48322 1.06046 1.08218 1.70990 1.21735 0.93271 0.88712 0.98531 1.22150 1.02422 1.01756 0.95560 1.18694 0.93022 0.78459 0.95890 1.21704 1.44307 0.98993 0.93038 0.92929 1.25895 0.94846 0.96512 1.02094 1.70059 1.45720 1.08056 1.33073 0.85394 0.78959 0.77357 0.78969 1.18711 1.20604 1.19755 1.21215 0.99888 0.95443 0.97671 1.21229 0.99736 0.94479 0.98537 0.93026 0.93142 0.91114 0.90272 0.90115 0.84393 0.85410 0.91643 0.92159 0.87445 0.86877 0.91093 0.88208 0.94349 0.88629 0.92079 0.96127 0.98705 0.92405 0.85858 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 71.98 0.71 -0.88 16 2 C -0.08 -0.96 6.06 29.85 0.18 -0.78 16 3 C -0.09 -1.55 5.13 -19.87 -0.10 -1.66 16 4 C -0.12 -2.12 9.70 22.27 0.22 -1.90 16 5 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 6 C -0.09 -2.14 5.13 -19.86 -0.10 -2.24 16 7 C -0.06 -1.69 4.63 29.85 0.14 -1.55 16 8 C -0.11 -3.28 4.23 29.85 0.13 -3.16 16 9 C 0.49 21.03 7.67 87.66 0.67 21.71 16 10 O -0.60 -32.01 15.56 -3.04 -0.05 -32.06 16 11 N -0.60 -26.32 2.46 -826.18 -2.03 -28.34 16 12 C 0.10 3.11 5.93 86.38 0.51 3.62 16 13 C -0.16 -4.07 10.24 71.98 0.74 -3.33 16 14 C 0.26 14.50 5.16 85.63 0.44 14.94 16 15 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 17 C 0.01 0.31 5.46 84.65 0.46 0.77 16 18 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 19 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 23 C -0.12 -2.69 9.70 22.27 0.22 -2.47 16 24 C -0.12 -2.23 9.70 22.27 0.22 -2.01 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 30 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.06 2.01 8.04 -2.39 -0.02 2.00 16 33 H 0.06 1.93 8.04 -2.39 -0.02 1.91 16 34 H 0.11 2.68 7.40 -2.39 -0.02 2.66 16 35 H 0.11 2.66 7.19 -2.39 -0.02 2.65 16 36 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 37 H 0.10 2.42 6.44 -2.39 -0.02 2.41 16 38 H 0.04 1.13 8.14 -2.38 -0.02 1.12 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.43 7.22 -2.39 -0.02 1.41 16 41 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 42 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 45 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -75.29 373.04 6.06 -69.24 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.94 Total: 13.47 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 4.88 Total: -12.97 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -1.74 Total: -85.39 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.05 Total: -32.06 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -75.29 6.06 -69.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.374 kcal (2) G-P(sol) polarization free energy of solvation -75.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds