Wall clock time and date at job start Tue Mar 31 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47096 * 2 1 4 4 C 1.38235 * 119.99865 * 269.72344 * 3 2 1 5 5 C 1.38237 * 119.99955 * 179.76194 * 4 3 2 6 6 C 1.38233 * 119.99663 * 0.51178 * 5 4 3 7 7 C 1.50704 * 119.99610 * 179.72359 * 6 5 4 8 8 H 1.09008 * 109.47083 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46922 * 300.01867 * 7 6 5 10 10 C 1.50694 * 109.47439 * 60.02012 * 7 6 5 11 11 O 1.21277 * 119.99868 * 330.92637 * 10 7 6 12 12 N 1.34779 * 120.00068 * 150.92667 * 10 7 6 13 13 C 1.46500 * 119.99927 * 184.27948 * 12 10 7 14 14 C 1.52995 * 109.46910 * 85.88139 * 13 12 10 15 15 C 1.46501 * 119.99925 * 4.27852 * 12 10 7 16 16 C 1.50707 * 109.47022 * 84.28529 * 15 12 10 17 17 H 1.07996 * 119.99546 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99577 * 179.97438 * 16 15 12 19 19 N 1.31509 * 120.00419 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99592 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47048 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46876 * 119.99845 * 20 18 16 23 23 H 1.48503 * 109.47216 * 240.00006 * 20 18 16 24 24 C 1.38228 * 120.00560 * 359.74434 * 6 5 4 25 25 C 1.38237 * 119.99842 * 89.99296 * 3 2 1 26 26 H 1.08997 * 109.47758 * 300.00163 * 1 2 3 27 27 H 1.09003 * 109.46824 * 60.00289 * 1 2 3 28 28 H 1.09003 * 109.47243 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46824 * 119.99711 * 2 1 3 30 30 H 1.09002 * 109.47329 * 239.99663 * 2 1 3 31 31 H 1.08000 * 119.99990 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.00010 * 180.23220 * 5 4 3 33 33 H 1.09002 * 109.46855 * 178.39956 * 9 7 6 34 34 H 1.09009 * 109.47072 * 298.39839 * 9 7 6 35 35 H 1.08992 * 109.47315 * 58.39821 * 9 7 6 36 36 H 1.09000 * 109.46877 * 205.87845 * 13 12 10 37 37 H 1.08998 * 109.46717 * 325.88158 * 13 12 10 38 38 H 1.09000 * 109.47465 * 64.80564 * 14 13 12 39 39 H 1.09004 * 109.47138 * 184.80836 * 14 13 12 40 40 H 1.09007 * 109.47493 * 304.80228 * 14 13 12 41 41 H 1.08996 * 109.47149 * 204.28650 * 15 12 10 42 42 H 1.08996 * 109.47035 * 324.28775 * 15 12 10 43 43 H 0.97000 * 120.00416 * 180.02562 * 19 18 16 44 44 H 1.08003 * 120.00456 * 179.97438 * 24 6 5 45 45 H 1.07995 * 120.00424 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9546 4.0271 -0.0001 7 6 3.4577 5.4477 -0.0001 8 1 3.5791 5.7902 1.0276 9 6 4.8056 5.5112 -0.7214 10 6 2.4657 6.3320 -0.7106 11 8 1.7683 5.8753 -1.5914 12 7 2.3535 7.6304 -0.3671 13 6 1.3255 8.4671 -0.9913 14 6 0.0120 8.3212 -0.2206 15 6 3.2594 8.2052 0.6305 16 6 4.5419 8.6267 -0.0393 17 1 4.6695 8.4807 -1.1017 18 6 5.5522 9.1988 0.7043 19 7 5.3970 9.3761 1.9981 20 14 7.1422 9.7206 -0.1258 21 1 7.0666 9.4146 -1.5769 22 1 7.3427 11.1801 0.0620 23 1 8.2810 8.9828 0.4776 24 6 2.7238 3.3757 1.1971 25 6 2.2626 2.0725 1.1972 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 2.0920 1.5600 -2.1324 32 1 2.9049 3.8843 -2.1325 33 1 5.1560 6.5431 -0.7463 34 1 5.5309 4.8939 -0.1911 35 1 4.6903 5.1419 -1.7403 36 1 1.6443 9.5092 -0.9720 37 1 1.1779 8.1512 -2.0240 38 1 0.1364 8.7162 0.7877 39 1 -0.7738 8.8756 -0.7337 40 1 -0.2627 7.2676 -0.1667 41 1 2.7882 9.0729 1.0920 42 1 3.4770 7.4600 1.3957 43 1 6.1077 9.7789 2.5212 44 1 2.9042 3.8847 2.1324 45 1 2.0829 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103210272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:03 Heat of formation + Delta-G solvation = -35.330003 kcal Electronic energy + Delta-G solvation = -23484.560383 eV Core-core repulsion = 20273.016972 eV Total energy + Delta-G solvation = -3211.543411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.88283 -38.57995 -35.29996 -34.69151 -32.92126 -32.23392 -30.60723 -30.21567 -28.14643 -27.04379 -24.57494 -23.49878 -23.03563 -22.40752 -21.71936 -20.23065 -18.12298 -16.56149 -16.41397 -16.04258 -15.44337 -15.13077 -14.66647 -14.45121 -14.17292 -13.67867 -13.62034 -13.40292 -13.04703 -12.97644 -12.73616 -12.52896 -12.34527 -12.03598 -11.68066 -11.59634 -11.53802 -11.43146 -11.28061 -11.08340 -10.94958 -10.93006 -10.76744 -10.55936 -10.47706 -10.21559 -10.04936 -9.70855 -8.92109 -8.58362 -8.50905 -8.16208 -7.69222 -6.21561 -4.27633 1.63573 1.76845 3.19347 3.28643 3.31769 3.47132 3.88749 4.18103 4.31936 4.84236 4.93404 5.10629 5.20124 5.26531 5.30923 5.34789 5.44480 5.55815 5.65856 5.72053 5.76708 5.81765 5.84929 5.87955 5.89837 5.98051 6.06597 6.13271 6.25900 6.31839 6.35925 6.44622 6.48551 6.52267 6.64551 6.73323 6.79419 6.87828 7.02695 7.08973 7.19952 7.35421 7.56378 7.74464 8.03560 8.35700 8.77579 9.06709 9.38890 10.84947 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.004433 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.768099 B = 6314.841706 C = 7076.551747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.093 4.093 4 C -0.126 4.126 5 C -0.076 4.076 6 C -0.067 4.067 7 C -0.065 4.065 8 H 0.102 0.898 9 C -0.144 4.144 10 C 0.526 3.474 11 O -0.570 6.570 12 N -0.596 5.596 13 C 0.116 3.884 14 C -0.163 4.163 15 C 0.236 3.764 16 C -0.534 4.534 17 H 0.064 0.936 18 C 0.066 3.934 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.281 1.281 24 C -0.112 4.112 25 C -0.126 4.126 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.265 0.735 44 H 0.120 0.880 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 -11.976 -1.682 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.144 4.144 5 C -0.094 4.094 6 C -0.067 4.067 7 C -0.086 4.086 8 H 0.120 0.880 9 C -0.202 4.202 10 C 0.314 3.686 11 O -0.451 6.451 12 N -0.326 5.326 13 C -0.008 4.008 14 C -0.221 4.221 15 C 0.116 3.884 16 C -0.572 4.572 17 H 0.082 0.918 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.719 3.281 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.207 1.207 24 C -0.130 4.130 25 C -0.144 4.144 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.144 0.856 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.138 0.862 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.273 -12.100 -1.958 13.769 hybrid contribution 0.962 0.557 -0.168 1.124 sum -5.311 -11.543 -2.126 12.883 Atomic orbital electron populations 1.21747 0.95040 1.01220 1.02347 1.20489 0.95974 0.93083 1.02314 1.19793 1.00136 0.96004 0.93382 1.20956 1.01274 0.95115 0.97085 1.21061 0.96625 0.93404 0.98296 1.19658 0.98873 0.94921 0.93259 1.20184 0.95665 0.90392 1.02394 0.87965 1.21920 0.93788 1.05752 0.98713 1.20252 0.82918 0.82555 0.82841 1.90567 1.47206 1.74699 1.32635 1.48240 1.33273 1.08840 1.42270 1.21217 0.87350 0.95316 0.96903 1.22115 0.97506 1.01780 1.00717 1.19469 0.87821 0.94476 0.86647 1.21502 0.99591 1.40849 0.95295 0.91790 1.24928 0.98676 0.95335 0.94761 1.69922 1.33748 1.43425 1.05614 0.86527 0.83216 0.78453 0.79869 1.19544 1.20864 1.20728 1.21058 0.99587 0.94835 0.97548 1.20854 1.01423 0.94968 0.97136 0.92607 0.92541 0.92769 0.91423 0.91405 0.86725 0.85634 0.88106 0.92571 0.93368 0.90559 0.91317 0.92722 0.92506 0.92825 0.94584 0.94473 0.92539 0.86189 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.08 -0.84 6.07 -27.88 -0.17 -1.01 16 3 C -0.09 -1.26 5.13 -104.62 -0.54 -1.79 16 4 C -0.13 -1.85 9.70 -39.58 -0.38 -2.24 16 5 C -0.08 -1.29 7.91 -39.58 -0.31 -1.60 16 6 C -0.07 -1.17 4.68 -104.63 -0.49 -1.66 16 7 C -0.07 -1.25 2.26 -92.92 -0.21 -1.46 16 8 H 0.10 2.00 5.77 -51.92 -0.30 1.70 16 9 C -0.14 -2.69 8.99 37.16 0.33 -2.36 16 10 C 0.53 11.10 6.65 -10.99 -0.07 11.03 16 11 O -0.57 -12.84 14.18 5.56 0.08 -12.76 16 12 N -0.60 -12.55 2.48 -175.07 -0.43 -12.98 16 13 C 0.12 2.15 6.09 -4.04 -0.02 2.12 16 14 C -0.16 -2.64 10.21 37.15 0.38 -2.26 16 15 C 0.24 5.46 4.94 -5.19 -0.03 5.43 16 16 C -0.53 -13.30 7.07 -34.44 -0.24 -13.54 16 17 H 0.06 1.63 7.31 -52.49 -0.38 1.25 16 18 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -23.80 13.29 55.43 0.74 -23.06 16 20 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.11 -1.76 9.67 -39.58 -0.38 -2.15 16 25 C -0.13 -1.75 9.70 -39.58 -0.38 -2.13 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.13 2.24 6.78 -52.49 -0.36 1.89 16 33 H 0.10 2.11 5.04 -51.93 -0.26 1.85 16 34 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.05 0.85 7.33 -51.93 -0.38 0.47 16 36 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 37 H 0.07 1.29 7.49 -51.93 -0.39 0.90 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 41 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 42 H 0.04 0.89 5.98 -51.93 -0.31 0.58 16 43 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 44 H 0.12 1.74 7.95 -52.48 -0.42 1.32 16 45 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -27.78 362.55 -8.84 -36.62 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.41 Total: 4.80 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.25 Total: -13.06 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.30 Total: -36.05 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.78 -8.84 -36.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103210272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.293 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds