Wall clock time and date at job start Tue Mar 31 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47096 * 2 1 4 4 C 1.38235 * 119.99865 * 269.72344 * 3 2 1 5 5 C 1.38237 * 119.99955 * 179.76194 * 4 3 2 6 6 C 1.38233 * 119.99663 * 0.51178 * 5 4 3 7 7 C 1.50704 * 119.99610 * 179.72359 * 6 5 4 8 8 H 1.09008 * 109.47083 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46922 * 300.01867 * 7 6 5 10 10 C 1.50694 * 109.47439 * 60.02012 * 7 6 5 11 11 O 1.21277 * 119.99868 * 330.92637 * 10 7 6 12 12 N 1.34779 * 120.00068 * 150.92667 * 10 7 6 13 13 C 1.46500 * 119.99927 * 184.27948 * 12 10 7 14 14 C 1.52995 * 109.46910 * 85.88139 * 13 12 10 15 15 C 1.46501 * 119.99925 * 4.27852 * 12 10 7 16 16 C 1.50707 * 109.47022 * 84.28529 * 15 12 10 17 17 H 1.07996 * 119.99546 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99577 * 179.97438 * 16 15 12 19 19 N 1.31509 * 120.00419 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99592 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47048 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46876 * 119.99845 * 20 18 16 23 23 H 1.48503 * 109.47216 * 240.00006 * 20 18 16 24 24 C 1.38228 * 120.00560 * 359.74434 * 6 5 4 25 25 C 1.38237 * 119.99842 * 89.99296 * 3 2 1 26 26 H 1.08997 * 109.47758 * 300.00163 * 1 2 3 27 27 H 1.09003 * 109.46824 * 60.00289 * 1 2 3 28 28 H 1.09003 * 109.47243 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46824 * 119.99711 * 2 1 3 30 30 H 1.09002 * 109.47329 * 239.99663 * 2 1 3 31 31 H 1.08000 * 119.99990 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.00010 * 180.23220 * 5 4 3 33 33 H 1.09002 * 109.46855 * 178.39956 * 9 7 6 34 34 H 1.09009 * 109.47072 * 298.39839 * 9 7 6 35 35 H 1.08992 * 109.47315 * 58.39821 * 9 7 6 36 36 H 1.09000 * 109.46877 * 205.87845 * 13 12 10 37 37 H 1.08998 * 109.46717 * 325.88158 * 13 12 10 38 38 H 1.09000 * 109.47465 * 64.80564 * 14 13 12 39 39 H 1.09004 * 109.47138 * 184.80836 * 14 13 12 40 40 H 1.09007 * 109.47493 * 304.80228 * 14 13 12 41 41 H 1.08996 * 109.47149 * 204.28650 * 15 12 10 42 42 H 1.08996 * 109.47035 * 324.28775 * 15 12 10 43 43 H 0.97000 * 120.00416 * 180.02562 * 19 18 16 44 44 H 1.08003 * 120.00456 * 179.97438 * 24 6 5 45 45 H 1.07995 * 120.00424 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9546 4.0271 -0.0001 7 6 3.4577 5.4477 -0.0001 8 1 3.5791 5.7902 1.0276 9 6 4.8056 5.5112 -0.7214 10 6 2.4657 6.3320 -0.7106 11 8 1.7683 5.8753 -1.5914 12 7 2.3535 7.6304 -0.3671 13 6 1.3255 8.4671 -0.9913 14 6 0.0120 8.3212 -0.2206 15 6 3.2594 8.2052 0.6305 16 6 4.5419 8.6267 -0.0393 17 1 4.6695 8.4807 -1.1017 18 6 5.5522 9.1988 0.7043 19 7 5.3970 9.3761 1.9981 20 14 7.1422 9.7206 -0.1258 21 1 7.0666 9.4146 -1.5769 22 1 7.3427 11.1801 0.0620 23 1 8.2810 8.9828 0.4776 24 6 2.7238 3.3757 1.1971 25 6 2.2626 2.0725 1.1972 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 2.0920 1.5600 -2.1324 32 1 2.9049 3.8843 -2.1325 33 1 5.1560 6.5431 -0.7463 34 1 5.5309 4.8939 -0.1911 35 1 4.6903 5.1419 -1.7403 36 1 1.6443 9.5092 -0.9720 37 1 1.1779 8.1512 -2.0240 38 1 0.1364 8.7162 0.7877 39 1 -0.7738 8.8756 -0.7337 40 1 -0.2627 7.2676 -0.1667 41 1 2.7882 9.0729 1.0920 42 1 3.4770 7.4600 1.3957 43 1 6.1077 9.7789 2.5212 44 1 2.9042 3.8847 2.1324 45 1 2.0829 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103210272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:02 Heat of formation + Delta-G solvation = -47.060107 kcal Electronic energy + Delta-G solvation = -23485.069039 eV Core-core repulsion = 20273.016972 eV Total energy + Delta-G solvation = -3212.052067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36384 -39.92938 -36.94239 -36.00915 -34.70688 -33.55292 -31.81681 -31.67854 -29.31970 -28.92456 -25.96208 -24.95593 -24.67792 -23.59113 -22.98891 -21.42236 -19.76724 -18.46616 -18.04383 -17.53602 -16.71361 -16.47568 -16.18310 -15.94888 -15.71941 -14.92815 -14.74479 -14.52958 -14.43932 -14.35794 -14.12643 -13.96713 -13.71606 -13.56344 -13.18749 -13.14855 -13.06644 -12.72174 -12.70066 -12.58272 -12.47342 -12.25522 -12.05194 -11.96649 -11.77403 -11.63028 -11.60575 -11.54829 -10.65303 -10.44167 -9.72847 -9.46701 -9.34831 -8.18716 -6.30546 0.44488 0.58102 1.40542 1.44865 1.54171 1.79086 2.30918 2.45927 2.92478 3.11642 3.76308 3.77812 3.95520 4.02305 4.18456 4.20164 4.25810 4.38068 4.42591 4.46087 4.52146 4.55841 4.63905 4.72677 4.76449 4.81514 4.90451 4.95106 4.99312 5.05151 5.10109 5.10855 5.18112 5.22232 5.27051 5.30716 5.40336 5.43553 5.58665 5.68628 5.76700 5.82082 5.89646 6.08231 6.18102 6.57315 6.83647 7.32479 7.43688 8.87223 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.004433 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.768099 B = 6314.841706 C = 7076.551747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.088 4.088 4 C -0.131 4.131 5 C -0.092 4.092 6 C -0.089 4.089 7 C -0.060 4.060 8 H 0.092 0.908 9 C -0.137 4.137 10 C 0.521 3.479 11 O -0.586 6.586 12 N -0.601 5.601 13 C 0.109 3.891 14 C -0.151 4.151 15 C 0.251 3.749 16 C -0.534 4.534 17 H 0.055 0.945 18 C 0.026 3.974 19 N -0.918 5.918 20 Si 0.949 3.051 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.277 1.277 24 C -0.123 4.123 25 C -0.124 4.124 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.038 0.962 41 H 0.023 0.977 42 H 0.028 0.972 43 H 0.267 0.733 44 H 0.126 0.874 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.325 -13.633 -1.637 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.149 4.149 5 C -0.111 4.111 6 C -0.090 4.090 7 C -0.081 4.081 8 H 0.110 0.890 9 C -0.194 4.194 10 C 0.310 3.690 11 O -0.468 6.468 12 N -0.331 5.331 13 C -0.014 4.014 14 C -0.209 4.209 15 C 0.130 3.870 16 C -0.573 4.573 17 H 0.073 0.927 18 C -0.175 4.175 19 N -0.557 5.557 20 Si 0.775 3.225 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.203 1.203 24 C -0.141 4.141 25 C -0.142 4.142 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.152 0.848 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.144 0.856 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.607 -13.754 -1.922 15.379 hybrid contribution 0.999 1.016 -0.199 1.439 sum -5.608 -12.738 -2.121 14.079 Atomic orbital electron populations 1.21739 0.94449 1.02432 1.01624 1.20568 0.96318 0.90927 1.03839 1.20210 0.98441 0.97523 0.92623 1.21204 1.00671 0.94291 0.98688 1.21009 0.98070 0.94606 0.97382 1.19592 1.00889 0.94136 0.94367 1.20101 0.95301 0.91405 1.01266 0.89015 1.21813 0.94025 1.04340 0.99237 1.20634 0.83026 0.82628 0.82677 1.90544 1.47949 1.74945 1.33402 1.48295 1.33550 1.09253 1.41980 1.21404 0.87949 0.95091 0.96963 1.22009 0.96904 1.01279 1.00736 1.19138 0.87556 0.93547 0.86710 1.21594 1.00323 1.40515 0.94824 0.92713 1.25556 1.01305 0.95413 0.95191 1.70003 1.34734 1.44309 1.06676 0.85638 0.79960 0.78018 0.78913 1.19456 1.20613 1.20264 1.21229 0.99862 0.95856 0.97115 1.21197 1.00183 0.94202 0.98641 0.93097 0.93536 0.90639 0.89713 0.90149 0.84821 0.87374 0.90525 0.91070 0.93014 0.90199 0.91691 0.92688 0.89440 0.94273 0.95935 0.95452 0.92357 0.85582 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.89 71.98 0.71 -1.66 16 2 C -0.08 -1.37 6.07 29.85 0.18 -1.19 16 3 C -0.09 -2.17 5.13 -19.87 -0.10 -2.27 16 4 C -0.13 -3.67 9.70 22.27 0.22 -3.46 16 5 C -0.09 -3.16 7.91 22.27 0.18 -2.99 16 6 C -0.09 -3.16 4.68 -19.87 -0.09 -3.26 16 7 C -0.06 -2.34 2.26 -12.28 -0.03 -2.37 16 8 H 0.09 3.73 5.77 -2.38 -0.01 3.72 16 9 C -0.14 -5.21 8.99 71.98 0.65 -4.56 16 10 C 0.52 22.57 6.65 87.65 0.58 23.15 16 11 O -0.59 -26.99 14.18 -3.02 -0.04 -27.04 16 12 N -0.60 -25.88 2.48 -826.17 -2.05 -27.93 16 13 C 0.11 4.06 6.09 86.38 0.53 4.59 16 14 C -0.15 -4.80 10.21 71.98 0.74 -4.07 16 15 C 0.25 11.93 4.94 85.63 0.42 12.35 16 16 C -0.53 -27.04 7.07 25.60 0.18 -26.86 16 17 H 0.05 2.84 7.31 -2.91 -0.02 2.82 16 18 C 0.03 1.33 5.46 84.66 0.46 1.79 16 19 N -0.92 -49.53 13.29 21.45 0.28 -49.24 16 20 Si 0.95 41.09 29.54 68.60 2.03 43.12 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 24 C -0.12 -3.78 9.67 22.27 0.22 -3.56 16 25 C -0.12 -3.20 9.70 22.27 0.22 -2.98 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 30 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 31 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.11 3.99 6.78 -2.91 -0.02 3.97 16 33 H 0.08 3.29 5.04 -2.39 -0.01 3.27 16 34 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.05 1.88 7.33 -2.39 -0.02 1.86 16 36 H 0.08 2.89 8.04 -2.39 -0.02 2.87 16 37 H 0.06 2.47 7.49 -2.39 -0.02 2.45 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.04 1.34 8.14 -2.38 -0.02 1.33 16 41 H 0.02 1.13 8.03 -2.39 -0.02 1.11 16 42 H 0.03 1.36 5.98 -2.39 -0.01 1.35 16 43 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 44 H 0.13 3.61 7.95 -2.91 -0.02 3.59 16 45 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -59.34 362.55 6.22 -53.11 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.95 Total: 25.30 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 5.05 Total: -17.32 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -1.76 Total: -77.17 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.04 Total: -27.04 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -59.34 6.22 -53.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103210272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.054 kcal (2) G-P(sol) polarization free energy of solvation -59.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds