Wall clock time and date at job start Tue Mar 31 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47547 * 2 1 4 4 C 1.38228 * 120.00210 * 89.99555 * 3 2 1 5 5 C 1.38242 * 120.00078 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99627 * 359.95775 * 5 4 3 7 7 C 1.50699 * 119.99741 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47089 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47315 * 240.00278 * 7 6 5 10 10 C 1.50704 * 109.47215 * 120.00073 * 7 6 5 11 11 O 1.21281 * 119.99872 * 32.01186 * 10 7 6 12 12 N 1.34773 * 120.00047 * 212.01317 * 10 7 6 13 13 C 1.46500 * 120.00209 * 175.95911 * 12 10 7 14 14 C 1.52992 * 109.47505 * 266.79407 * 13 12 10 15 15 C 1.46504 * 120.00287 * 355.96337 * 12 10 7 16 16 C 1.50696 * 109.47073 * 275.66394 * 15 12 10 17 17 H 1.08003 * 119.99999 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00263 * 179.97438 * 16 15 12 19 19 N 1.31516 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00097 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46934 * 60.00409 * 20 18 16 22 22 H 1.48502 * 109.46946 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47499 * 300.00057 * 20 18 16 24 24 C 1.38228 * 120.00181 * 0.27585 * 6 5 4 25 25 C 1.38234 * 119.99948 * 359.53723 * 24 6 5 26 26 H 1.08991 * 109.47040 * 60.00307 * 1 2 3 27 27 H 1.09000 * 109.47361 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46775 * 299.99984 * 1 2 3 29 29 H 1.09006 * 109.47253 * 239.99441 * 2 1 3 30 30 H 1.09005 * 109.46912 * 120.00226 * 2 1 3 31 31 H 1.08002 * 120.00219 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.00095 * 179.97438 * 5 4 3 33 33 H 1.09006 * 109.47179 * 186.24482 * 9 7 6 34 34 H 1.09006 * 109.46835 * 306.24317 * 9 7 6 35 35 H 1.08999 * 109.47504 * 66.24578 * 9 7 6 36 36 H 1.09000 * 109.46686 * 26.79429 * 13 12 10 37 37 H 1.08999 * 109.47249 * 146.78628 * 13 12 10 38 38 H 1.09002 * 109.47173 * 184.82845 * 14 13 12 39 39 H 1.09004 * 109.46919 * 304.82335 * 14 13 12 40 40 H 1.08997 * 109.47536 * 64.82252 * 14 13 12 41 41 H 1.09002 * 109.46782 * 35.65809 * 15 12 10 42 42 H 1.08993 * 109.47625 * 155.66016 * 15 12 10 43 43 H 0.96999 * 119.99955 * 179.97438 * 19 18 16 44 44 H 1.07999 * 119.99974 * 179.72588 * 24 6 5 45 45 H 1.08005 * 119.99693 * 180.21040 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7232 3.3759 1.1970 6 6 2.9540 4.0273 -0.0002 7 6 3.4564 5.4480 -0.0002 8 1 3.5777 5.7906 1.0274 9 6 2.4489 6.3453 -0.7219 10 6 4.7842 5.5113 -0.7102 11 8 5.0187 4.7521 -1.6265 12 7 5.7111 6.4115 -0.3270 13 6 7.0337 6.4148 -0.9571 14 6 7.9950 5.5591 -0.1299 15 6 5.3962 7.3868 0.7199 16 6 4.6894 8.5691 0.1089 17 1 4.4945 8.5919 -0.9532 18 6 4.2913 9.6216 0.9055 19 7 4.5281 9.5936 2.1989 20 14 3.4157 11.0875 0.1479 21 1 2.1592 10.6328 -0.5000 22 1 3.0953 12.0754 1.2093 23 1 4.2958 11.7192 -0.8677 24 6 2.7190 3.3772 -1.1972 25 6 2.2623 2.0725 -1.1972 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0831 1.5632 2.1324 32 1 2.9028 3.8852 2.1323 33 1 2.8615 7.3495 -0.8197 34 1 2.2443 5.9385 -1.7123 35 1 1.5233 6.3872 -0.1479 36 1 6.9572 6.0049 -1.9642 37 1 7.4092 7.4368 -1.0085 38 1 8.9983 5.6305 -0.5500 39 1 8.0059 5.9172 0.8996 40 1 7.6658 4.5203 -0.1497 41 1 4.7506 6.9233 1.4659 42 1 6.3187 7.7207 1.1949 43 1 4.2484 10.3342 2.7593 44 1 2.8952 3.8877 -2.1325 45 1 2.0820 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103210275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:06 Heat of formation + Delta-G solvation = -35.415344 kcal Electronic energy + Delta-G solvation = -23445.805267 eV Core-core repulsion = 20234.258155 eV Total energy + Delta-G solvation = -3211.547112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88425 -38.58165 -35.31895 -34.69459 -32.89821 -32.24488 -30.61292 -30.20548 -28.16054 -27.05287 -24.60793 -23.48044 -23.05693 -22.41165 -21.68043 -20.22883 -18.12742 -16.56456 -16.43231 -16.05658 -15.43646 -15.12883 -14.66536 -14.43794 -14.18321 -13.71820 -13.61572 -13.40125 -13.15813 -12.95679 -12.67075 -12.52672 -12.25485 -12.07674 -11.73304 -11.59103 -11.54382 -11.45005 -11.28335 -11.12238 -10.95658 -10.93325 -10.74364 -10.54881 -10.48084 -10.20811 -10.06462 -9.72930 -8.93094 -8.57395 -8.51135 -8.16393 -7.69220 -6.20398 -4.26993 1.62968 1.76380 3.22528 3.27998 3.29864 3.46544 3.88592 4.17606 4.32530 4.83555 4.92841 5.12042 5.19267 5.26120 5.28621 5.35775 5.43740 5.55059 5.65638 5.72456 5.76262 5.81151 5.84254 5.87613 5.89810 5.96528 6.06090 6.11034 6.26627 6.31222 6.35251 6.44813 6.47836 6.50630 6.65083 6.72455 6.79599 6.87414 6.96642 7.07935 7.20042 7.34969 7.56159 7.75297 8.04412 8.35734 8.77730 9.06427 9.39909 10.86170 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.004461 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.883096 B = 6275.060729 C = 7117.303694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.093 4.093 4 C -0.126 4.126 5 C -0.112 4.112 6 C -0.067 4.067 7 C -0.066 4.066 8 H 0.104 0.896 9 C -0.139 4.139 10 C 0.526 3.474 11 O -0.571 6.571 12 N -0.596 5.596 13 C 0.113 3.887 14 C -0.163 4.163 15 C 0.237 3.763 16 C -0.535 4.535 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.077 4.077 25 C -0.126 4.126 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.266 0.734 44 H 0.127 0.873 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 -12.727 -2.023 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.144 4.144 5 C -0.130 4.130 6 C -0.068 4.068 7 C -0.087 4.087 8 H 0.122 0.878 9 C -0.196 4.196 10 C 0.315 3.685 11 O -0.452 6.452 12 N -0.326 5.326 13 C -0.010 4.010 14 C -0.221 4.221 15 C 0.117 3.883 16 C -0.574 4.574 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.095 4.095 25 C -0.144 4.144 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.145 0.855 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.752 -12.980 -2.301 13.706 hybrid contribution -0.370 1.069 -0.134 1.139 sum -4.122 -11.911 -2.435 12.837 Atomic orbital electron populations 1.21743 0.95032 1.01253 1.02258 1.20493 0.95933 0.93118 1.02383 1.19790 1.00193 0.95928 0.93382 1.20857 1.01463 0.94895 0.97146 1.21067 0.99624 0.94723 0.97571 1.19659 0.98724 0.95121 0.93271 1.20196 0.93545 0.92436 1.02559 0.87798 1.21821 0.97609 1.01300 0.98862 1.20263 0.85411 0.79655 0.83210 1.90562 1.80355 1.43404 1.30911 1.48235 1.11897 1.32898 1.39556 1.21231 0.82935 1.00084 0.96781 1.22114 0.98753 1.00386 1.00893 1.19443 0.97132 0.86240 0.85486 1.21427 1.38297 1.02852 0.94813 0.91972 1.24919 0.95740 0.98245 0.94728 1.69907 1.46379 1.32439 1.04076 0.86627 0.80255 0.82161 0.78900 1.19925 1.21144 1.20145 1.21080 0.95926 0.94190 0.98332 1.20955 1.01222 0.95140 0.97091 0.92587 0.92772 0.92591 0.91390 0.91411 0.86635 0.86148 0.88856 0.93279 0.92423 0.90921 0.90772 0.92455 0.92493 0.93020 0.94488 0.94577 0.92444 0.85548 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.90 37.16 0.37 -0.97 16 2 C -0.08 -0.84 6.06 -27.89 -0.17 -1.01 16 3 C -0.09 -1.25 5.13 -104.63 -0.54 -1.79 16 4 C -0.13 -1.75 9.70 -39.58 -0.38 -2.13 16 5 C -0.11 -1.76 9.67 -39.58 -0.38 -2.14 16 6 C -0.07 -1.18 4.70 -104.63 -0.49 -1.67 16 7 C -0.07 -1.27 2.32 -92.92 -0.22 -1.48 16 8 H 0.10 2.05 5.64 -51.93 -0.29 1.76 16 9 C -0.14 -2.57 9.06 37.16 0.34 -2.23 16 10 C 0.53 11.13 6.64 -10.99 -0.07 11.06 16 11 O -0.57 -12.88 14.11 5.56 0.08 -12.80 16 12 N -0.60 -12.58 2.47 -175.07 -0.43 -13.01 16 13 C 0.11 2.11 6.17 -4.05 -0.02 2.08 16 14 C -0.16 -2.64 10.24 37.15 0.38 -2.26 16 15 C 0.24 5.50 4.98 -5.19 -0.03 5.47 16 16 C -0.54 -13.40 7.48 -34.44 -0.26 -13.66 16 17 H 0.06 1.58 7.24 -52.48 -0.38 1.20 16 18 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -23.90 13.29 55.43 0.74 -23.17 16 20 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 C -0.08 -1.31 7.89 -39.59 -0.31 -1.62 16 25 C -0.13 -1.85 9.70 -39.58 -0.38 -2.23 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.75 7.95 -52.49 -0.42 1.33 16 33 H 0.09 1.94 5.46 -51.93 -0.28 1.65 16 34 H 0.05 0.85 7.17 -51.93 -0.37 0.48 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.37 7.28 -51.93 -0.38 0.99 16 37 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.89 5.94 -51.93 -0.31 0.58 16 42 H 0.04 0.88 8.03 -51.93 -0.42 0.47 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.13 2.25 6.70 -52.49 -0.35 1.90 16 45 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -27.83 362.92 -8.84 -36.67 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.40 Total: 4.75 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -2.27 Total: -12.96 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.30 Total: -36.18 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.83 -8.84 -36.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103210275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.258 kcal (2) G-P(sol) polarization free energy of solvation -27.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds