Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47547 * 2 1 4 4 C 1.38228 * 120.00210 * 89.99555 * 3 2 1 5 5 C 1.38242 * 120.00078 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99627 * 359.95775 * 5 4 3 7 7 C 1.50699 * 119.99741 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47089 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47315 * 240.00278 * 7 6 5 10 10 C 1.50704 * 109.47215 * 120.00073 * 7 6 5 11 11 O 1.21281 * 119.99872 * 32.01186 * 10 7 6 12 12 N 1.34773 * 120.00047 * 212.01317 * 10 7 6 13 13 C 1.46500 * 120.00209 * 175.95911 * 12 10 7 14 14 C 1.52992 * 109.47505 * 266.79407 * 13 12 10 15 15 C 1.46504 * 120.00287 * 355.96337 * 12 10 7 16 16 C 1.50696 * 109.47073 * 275.66394 * 15 12 10 17 17 H 1.08003 * 119.99999 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00263 * 179.97438 * 16 15 12 19 19 N 1.31516 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00097 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46934 * 60.00409 * 20 18 16 22 22 H 1.48502 * 109.46946 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47499 * 300.00057 * 20 18 16 24 24 C 1.38228 * 120.00181 * 0.27585 * 6 5 4 25 25 C 1.38234 * 119.99948 * 359.53723 * 24 6 5 26 26 H 1.08991 * 109.47040 * 60.00307 * 1 2 3 27 27 H 1.09000 * 109.47361 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46775 * 299.99984 * 1 2 3 29 29 H 1.09006 * 109.47253 * 239.99441 * 2 1 3 30 30 H 1.09005 * 109.46912 * 120.00226 * 2 1 3 31 31 H 1.08002 * 120.00219 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.00095 * 179.97438 * 5 4 3 33 33 H 1.09006 * 109.47179 * 186.24482 * 9 7 6 34 34 H 1.09006 * 109.46835 * 306.24317 * 9 7 6 35 35 H 1.08999 * 109.47504 * 66.24578 * 9 7 6 36 36 H 1.09000 * 109.46686 * 26.79429 * 13 12 10 37 37 H 1.08999 * 109.47249 * 146.78628 * 13 12 10 38 38 H 1.09002 * 109.47173 * 184.82845 * 14 13 12 39 39 H 1.09004 * 109.46919 * 304.82335 * 14 13 12 40 40 H 1.08997 * 109.47536 * 64.82252 * 14 13 12 41 41 H 1.09002 * 109.46782 * 35.65809 * 15 12 10 42 42 H 1.08993 * 109.47625 * 155.66016 * 15 12 10 43 43 H 0.96999 * 119.99955 * 179.97438 * 19 18 16 44 44 H 1.07999 * 119.99974 * 179.72588 * 24 6 5 45 45 H 1.08005 * 119.99693 * 180.21040 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7232 3.3759 1.1970 6 6 2.9540 4.0273 -0.0002 7 6 3.4564 5.4480 -0.0002 8 1 3.5777 5.7906 1.0274 9 6 2.4489 6.3453 -0.7219 10 6 4.7842 5.5113 -0.7102 11 8 5.0187 4.7521 -1.6265 12 7 5.7111 6.4115 -0.3270 13 6 7.0337 6.4148 -0.9571 14 6 7.9950 5.5591 -0.1299 15 6 5.3962 7.3868 0.7199 16 6 4.6894 8.5691 0.1089 17 1 4.4945 8.5919 -0.9532 18 6 4.2913 9.6216 0.9055 19 7 4.5281 9.5936 2.1989 20 14 3.4157 11.0875 0.1479 21 1 2.1592 10.6328 -0.5000 22 1 3.0953 12.0754 1.2093 23 1 4.2958 11.7192 -0.8677 24 6 2.7190 3.3772 -1.1972 25 6 2.2623 2.0725 -1.1972 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0831 1.5632 2.1324 32 1 2.9028 3.8852 2.1323 33 1 2.8615 7.3495 -0.8197 34 1 2.2443 5.9385 -1.7123 35 1 1.5233 6.3872 -0.1479 36 1 6.9572 6.0049 -1.9642 37 1 7.4092 7.4368 -1.0085 38 1 8.9983 5.6305 -0.5500 39 1 8.0059 5.9172 0.8996 40 1 7.6658 4.5203 -0.1497 41 1 4.7506 6.9233 1.4659 42 1 6.3187 7.7207 1.1949 43 1 4.2484 10.3342 2.7593 44 1 2.8952 3.8877 -2.1325 45 1 2.0820 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103210275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -47.148285 kcal Electronic energy + Delta-G solvation = -23446.314045 eV Core-core repulsion = 20234.258155 eV Total energy + Delta-G solvation = -3212.055891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36515 -39.93332 -36.96231 -36.00567 -34.69848 -33.55075 -31.82344 -31.66780 -29.32176 -28.93984 -25.98660 -24.97439 -24.65385 -23.59473 -22.95084 -21.42306 -19.77476 -18.45953 -18.08853 -17.53639 -16.71681 -16.46983 -16.17612 -15.93457 -15.74804 -14.95426 -14.67504 -14.55047 -14.41096 -14.40182 -14.23532 -13.93170 -13.67609 -13.44320 -13.21770 -13.11480 -13.09060 -12.82592 -12.70504 -12.62044 -12.42856 -12.22474 -12.04769 -11.96593 -11.80853 -11.64221 -11.60925 -11.53381 -10.65989 -10.44172 -9.73245 -9.46930 -9.35126 -8.18317 -6.30905 0.43960 0.57735 1.43487 1.44642 1.51469 1.78406 2.30511 2.46076 2.92053 3.12167 3.76137 3.77090 3.94793 4.02260 4.18384 4.19988 4.25902 4.37526 4.42236 4.45584 4.53080 4.57028 4.63597 4.72719 4.76701 4.81748 4.89304 4.95268 4.98138 5.04678 5.11098 5.11904 5.17671 5.22290 5.26887 5.31428 5.36496 5.43225 5.57890 5.68484 5.76489 5.81619 5.89184 6.08321 6.17759 6.56968 6.83090 7.32224 7.43452 8.87302 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.004461 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.883096 B = 6275.060729 C = 7117.303694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.087 4.087 4 C -0.124 4.124 5 C -0.122 4.122 6 C -0.090 4.090 7 C -0.060 4.060 8 H 0.092 0.908 9 C -0.131 4.131 10 C 0.522 3.478 11 O -0.587 6.587 12 N -0.601 5.601 13 C 0.106 3.894 14 C -0.152 4.152 15 C 0.253 3.747 16 C -0.537 4.537 17 H 0.054 0.946 18 C 0.026 3.974 19 N -0.918 5.918 20 Si 0.949 3.051 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.093 4.093 25 C -0.130 4.130 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.041 0.959 41 H 0.027 0.973 42 H 0.022 0.978 43 H 0.267 0.733 44 H 0.110 0.890 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -14.204 -2.055 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.142 4.142 5 C -0.140 4.140 6 C -0.091 4.091 7 C -0.082 4.082 8 H 0.110 0.890 9 C -0.189 4.189 10 C 0.311 3.689 11 O -0.469 6.469 12 N -0.331 5.331 13 C -0.016 4.016 14 C -0.210 4.210 15 C 0.132 3.868 16 C -0.576 4.576 17 H 0.073 0.927 18 C -0.174 4.174 19 N -0.558 5.558 20 Si 0.774 3.226 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.111 4.111 25 C -0.148 4.148 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.161 0.839 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.040 0.960 43 H 0.076 0.924 44 H 0.128 0.872 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.499 -14.462 -2.344 15.326 hybrid contribution -0.122 1.445 -0.143 1.457 sum -4.621 -13.017 -2.487 14.035 Atomic orbital electron populations 1.21728 0.94035 1.02452 1.01857 1.20571 0.96650 0.90908 1.03642 1.20204 0.98492 0.97420 0.92626 1.21194 1.00262 0.94109 0.98650 1.21229 0.99948 0.95737 0.97117 1.19592 1.00657 0.94427 0.94387 1.20109 0.92634 0.94056 1.01353 0.88997 1.21728 0.97911 0.99722 0.99513 1.20645 0.86026 0.79212 0.83051 1.90539 1.80800 1.43951 1.31656 1.48290 1.13027 1.32514 1.39222 1.21415 0.82424 1.00810 0.96981 1.22012 0.99656 0.99011 1.00303 1.19105 0.95939 0.86122 0.85646 1.21552 1.38158 1.03455 0.94422 0.92749 1.25558 0.96344 1.00491 0.95027 1.69996 1.47419 1.33246 1.05090 0.85747 0.79365 0.79309 0.78161 1.19375 1.20812 1.19937 1.21028 0.97311 0.95389 0.97413 1.21205 1.00632 0.94288 0.98687 0.93153 0.90815 0.92876 0.90397 0.89968 0.83892 0.85637 0.91270 0.92679 0.91060 0.91229 0.90559 0.89314 0.92976 0.93934 0.95483 0.95964 0.92358 0.87221 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.90 71.98 0.71 -1.47 16 2 C -0.08 -1.39 6.06 29.85 0.18 -1.21 16 3 C -0.09 -2.15 5.13 -19.87 -0.10 -2.25 16 4 C -0.12 -3.20 9.70 22.27 0.22 -2.98 16 5 C -0.12 -3.78 9.67 22.27 0.22 -3.56 16 6 C -0.09 -3.19 4.70 -19.87 -0.09 -3.28 16 7 C -0.06 -2.37 2.32 -12.29 -0.03 -2.40 16 8 H 0.09 3.77 5.64 -2.39 -0.01 3.76 16 9 C -0.13 -4.98 9.06 71.98 0.65 -4.32 16 10 C 0.52 22.60 6.64 87.66 0.58 23.18 16 11 O -0.59 -27.02 14.11 -3.03 -0.04 -27.06 16 12 N -0.60 -25.94 2.47 -826.17 -2.04 -27.99 16 13 C 0.11 3.99 6.17 86.38 0.53 4.52 16 14 C -0.15 -4.81 10.24 71.98 0.74 -4.07 16 15 C 0.25 12.04 4.98 85.63 0.43 12.47 16 16 C -0.54 -27.34 7.48 25.60 0.19 -27.15 16 17 H 0.05 2.82 7.24 -2.91 -0.02 2.80 16 18 C 0.03 1.36 5.46 84.65 0.46 1.82 16 19 N -0.92 -49.76 13.29 21.45 0.28 -49.48 16 20 Si 0.95 41.14 29.54 68.60 2.03 43.17 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 C -0.09 -3.17 7.89 22.27 0.18 -3.00 16 25 C -0.13 -3.64 9.70 22.27 0.22 -3.42 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.22 8.09 -2.38 -0.02 1.20 16 30 H 0.08 1.22 8.09 -2.38 -0.02 1.20 16 31 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.13 3.63 7.95 -2.91 -0.02 3.61 16 33 H 0.07 2.94 5.46 -2.38 -0.01 2.93 16 34 H 0.05 1.97 7.17 -2.38 -0.02 1.95 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.07 2.64 7.28 -2.39 -0.02 2.62 16 37 H 0.08 2.79 8.10 -2.39 -0.02 2.77 16 38 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.03 1.35 5.94 -2.39 -0.01 1.34 16 42 H 0.02 1.12 8.03 -2.39 -0.02 1.10 16 43 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 44 H 0.11 4.01 6.70 -2.91 -0.02 3.99 16 45 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -59.36 362.92 6.25 -53.11 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.95 Total: 25.37 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 5.08 Total: -17.13 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -1.76 Total: -77.46 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.04 Total: -27.06 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -59.36 6.25 -53.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103210275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.961 kcal (2) G-P(sol) polarization free energy of solvation -59.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds