Wall clock time and date at job start Tue Mar 31 2020 06:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47173 * 2 1 4 4 C 1.53002 * 109.46681 * 240.00150 * 2 1 3 5 5 C 1.52994 * 109.47309 * 120.00378 * 2 1 3 6 6 C 1.53001 * 109.47215 * 59.99330 * 5 2 1 7 7 C 1.53000 * 109.47498 * 179.97438 * 6 5 2 8 8 C 1.50699 * 109.47422 * 180.02562 * 7 6 5 9 9 O 1.21277 * 119.99788 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00132 * 180.02562 * 8 7 6 11 11 C 1.39237 * 120.00231 * 185.18464 * 10 8 7 12 12 C 1.39486 * 119.82855 * 324.05356 * 11 10 8 13 13 C 1.36370 * 120.16515 * 180.29933 * 12 11 10 14 14 C 1.40876 * 119.82773 * 359.48291 * 13 12 11 15 15 C 1.41160 * 120.16091 * 180.25102 * 14 13 12 16 16 H 1.07993 * 119.99606 * 205.02487 * 15 14 13 17 17 C 1.39904 * 120.00083 * 25.02497 * 15 14 13 18 18 N 1.30878 * 119.99809 * 17.77995 * 17 15 14 19 19 Si 1.86795 * 120.00190 * 197.77450 * 17 15 14 20 20 H 1.48501 * 109.47012 * 94.98303 * 19 17 15 21 21 H 1.48500 * 109.47567 * 214.98476 * 19 17 15 22 22 H 1.48504 * 109.46924 * 334.98548 * 19 17 15 23 23 C 1.40865 * 119.67384 * 0.51475 * 14 13 12 24 24 C 1.36379 * 119.82607 * 359.73526 * 23 14 13 25 25 H 1.09002 * 109.47300 * 300.00044 * 1 2 3 26 26 H 1.09004 * 109.47436 * 59.99511 * 1 2 3 27 27 H 1.08993 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46843 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47472 * 300.00020 * 3 2 1 30 30 H 1.09004 * 109.47289 * 60.00536 * 3 2 1 31 31 H 1.08993 * 109.47368 * 300.00172 * 4 2 1 32 32 H 1.09002 * 109.47274 * 60.00402 * 4 2 1 33 33 H 1.09004 * 109.46621 * 179.97438 * 4 2 1 34 34 H 1.09008 * 109.47261 * 300.00147 * 5 2 1 35 35 H 1.08994 * 109.47648 * 179.97438 * 5 2 1 36 36 H 1.09010 * 109.46820 * 60.00448 * 6 5 2 37 37 H 1.08995 * 109.47781 * 300.00643 * 6 5 2 38 38 H 1.09004 * 109.46908 * 60.00014 * 7 6 5 39 39 H 1.09004 * 109.47079 * 300.00915 * 7 6 5 40 40 H 0.97007 * 119.99967 * 5.17437 * 10 8 7 41 41 H 1.07998 * 119.91418 * 0.02562 * 12 11 10 42 42 H 1.08005 * 120.08508 * 179.69974 * 13 12 11 43 43 H 0.97000 * 119.99698 * 179.97438 * 18 17 15 44 44 H 1.07998 * 120.08712 * 179.71205 * 23 14 13 45 45 H 1.07999 * 119.91122 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 6 1.5299 -2.1638 1.2491 7 6 2.0404 -2.8853 2.4980 8 6 1.5385 -4.3063 2.4977 9 8 0.8408 -4.7027 1.5884 10 7 1.8642 -5.1362 3.5083 11 6 1.4920 -6.4769 3.4557 12 6 0.2707 -6.8361 2.8857 13 6 -0.1034 -8.1465 2.8361 14 6 0.7521 -9.1395 3.3526 15 6 0.3743 -10.4986 3.3000 16 1 0.7833 -11.2005 4.0115 17 6 -0.5301 -10.9361 2.3264 18 7 -0.7591 -10.2005 1.2684 19 14 -1.4105 -12.5701 2.5363 20 1 -2.7386 -12.3403 3.1596 21 1 -1.5910 -13.2095 1.2082 22 1 -0.6018 -13.4597 3.4081 23 6 1.9840 -8.7689 3.9266 24 6 2.3421 -7.4539 3.9737 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9563 0.8901 31 1 1.6765 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7208 -1.2495 34 1 1.6767 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2490 36 1 1.8933 -2.6776 0.3591 37 1 0.4400 -2.1638 1.2491 38 1 1.6776 -2.3716 3.3883 39 1 3.1305 -2.8853 2.4975 40 1 2.3581 -4.7996 4.2724 41 1 -0.3823 -6.0740 2.4867 42 1 -1.0516 -8.4227 2.3988 43 1 -1.3858 -10.5041 0.5931 44 1 2.6429 -9.5242 4.3288 45 1 3.2860 -7.1682 4.4139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103361357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:16 Heat of formation + Delta-G solvation = -50.910579 kcal Electronic energy + Delta-G solvation = -22264.462221 eV Core-core repulsion = 19052.243185 eV Total energy + Delta-G solvation = -3212.219036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.65872 -38.22941 -37.15802 -34.42607 -33.09759 -32.78318 -29.49853 -29.11817 -27.54323 -27.39200 -27.20283 -24.79436 -22.42507 -21.28385 -20.67410 -19.42459 -18.73303 -17.29921 -16.81459 -16.08416 -15.75318 -15.18521 -14.90533 -14.60778 -14.19292 -13.97658 -13.77899 -13.48400 -13.03841 -12.75601 -12.60178 -12.31379 -12.05447 -11.90785 -11.83593 -11.74569 -11.69524 -11.68585 -11.41157 -11.12301 -10.94505 -10.88965 -10.59085 -10.53026 -10.48085 -10.41300 -9.90997 -9.81304 -9.39144 -9.01469 -8.61391 -7.49502 -6.99051 -6.71838 -4.26956 2.63875 3.03285 3.08979 3.12833 3.13971 3.41153 3.82961 3.95245 4.58525 4.65618 4.66777 4.68371 5.06673 5.09179 5.18170 5.39668 5.42885 5.44709 5.61378 5.64493 5.64935 5.66776 5.73631 5.75979 5.79184 5.87071 5.95641 6.07848 6.15251 6.17536 6.20099 6.36613 6.43977 6.46543 6.86251 7.03499 7.08791 7.19108 7.33118 7.63220 7.72292 8.01665 8.08418 8.25571 8.36600 8.65987 8.85440 8.90949 9.05210 10.21261 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028582 B = 0.002759 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.401223 B =10147.554885 C =10830.637475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.108 4.108 6 C -0.108 4.108 7 C -0.138 4.138 8 C 0.495 3.505 9 O -0.530 6.530 10 N -0.656 5.656 11 C -0.008 4.008 12 C -0.085 4.085 13 C -0.158 4.158 14 C 0.106 3.894 15 C -0.460 4.460 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.788 5.788 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.217 4.217 24 C -0.105 4.105 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.393 0.607 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.281 0.719 44 H 0.095 0.905 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 17.670 0.125 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.146 4.146 6 C -0.145 4.145 7 C -0.179 4.179 8 C 0.281 3.719 9 O -0.406 6.406 10 N -0.299 5.299 11 C -0.101 4.101 12 C -0.105 4.105 13 C -0.178 4.178 14 C 0.103 3.897 15 C -0.489 4.489 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.413 5.413 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.237 4.237 24 C -0.125 4.125 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.226 0.774 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.092 0.908 44 H 0.113 0.887 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.709 17.401 -0.783 17.809 hybrid contribution -0.020 -0.588 0.387 0.704 sum 3.689 16.813 -0.396 17.217 Atomic orbital electron populations 1.21949 0.94612 1.02423 1.01292 1.20534 0.95800 0.95077 0.95597 1.21874 1.00788 0.95629 1.01482 1.21952 1.00784 1.00957 0.96612 1.21663 1.00374 0.95415 0.97125 1.21470 1.01830 0.94040 0.97190 1.21672 1.02166 0.93216 1.00810 1.20681 0.81473 0.87661 0.82042 1.90697 1.36931 1.76908 1.36097 1.43027 1.56817 1.08913 1.21111 1.17210 0.97323 0.81424 1.14097 1.20549 0.94259 0.96689 0.99037 1.21002 1.00721 0.90951 1.05144 1.17676 0.89681 0.93493 0.88856 1.19553 1.22076 0.94289 1.13023 0.90386 1.25944 0.95440 0.99165 0.93868 1.69872 1.27726 1.37650 1.06062 0.86299 0.80237 0.81587 0.78585 1.19345 1.20300 1.18587 1.20544 0.98033 0.94031 1.11093 1.20066 0.96757 0.93071 1.02612 0.92861 0.93028 0.91812 0.92831 0.92865 0.92844 0.91788 0.93027 0.92845 0.92086 0.92071 0.90859 0.90902 0.89577 0.89478 0.77365 0.87618 0.86340 0.90810 0.88696 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.12 37.16 0.30 -1.04 16 2 C -0.07 -0.62 0.80 -154.51 -0.12 -0.74 16 3 C -0.14 -1.06 8.47 37.16 0.31 -0.75 16 4 C -0.15 -1.36 8.12 37.16 0.30 -1.06 16 5 C -0.11 -0.99 4.27 -26.73 -0.11 -1.10 16 6 C -0.11 -1.27 3.80 -26.73 -0.10 -1.37 16 7 C -0.14 -1.64 5.70 -27.88 -0.16 -1.80 16 8 C 0.49 8.72 7.66 -10.99 -0.08 8.63 16 9 O -0.53 -11.80 13.42 5.56 0.07 -11.73 16 10 N -0.66 -11.66 5.30 -9.74 -0.05 -11.72 16 11 C -0.01 -0.19 6.30 -83.57 -0.53 -0.72 16 12 C -0.09 -2.17 8.62 -39.79 -0.34 -2.52 16 13 C -0.16 -4.32 8.63 -39.26 -0.34 -4.66 16 14 C 0.11 2.88 5.57 -106.80 -0.59 2.28 16 15 C -0.46 -12.36 9.03 -37.85 -0.34 -12.70 16 16 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 17 C 0.07 1.90 5.13 -17.33 -0.09 1.81 16 18 N -0.79 -21.08 10.98 55.55 0.61 -20.47 16 19 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 C -0.22 -5.35 9.74 -39.26 -0.38 -5.73 16 24 C -0.10 -2.34 9.90 -39.79 -0.39 -2.74 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.98 6.39 -51.92 -0.33 0.65 16 37 H 0.07 0.95 6.39 -51.93 -0.33 0.62 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.39 5.37 8.82 -40.82 -0.36 5.01 16 41 H 0.11 2.71 6.24 -52.49 -0.33 2.38 16 42 H 0.12 3.35 6.19 -52.48 -0.32 3.02 16 43 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 44 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 45 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -30.59 359.25 -9.05 -39.64 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.39 Total: 9.17 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -2.67 Total: -24.20 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.56 Total: -32.19 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.59 -9.05 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103361357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.269 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds