Wall clock time and date at job start Tue Mar 31 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47173 * 2 1 4 4 C 1.53002 * 109.46681 * 240.00150 * 2 1 3 5 5 C 1.52994 * 109.47309 * 120.00378 * 2 1 3 6 6 C 1.53001 * 109.47215 * 59.99330 * 5 2 1 7 7 C 1.53000 * 109.47498 * 179.97438 * 6 5 2 8 8 C 1.50699 * 109.47422 * 180.02562 * 7 6 5 9 9 O 1.21277 * 119.99788 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00132 * 180.02562 * 8 7 6 11 11 C 1.39237 * 120.00231 * 185.18464 * 10 8 7 12 12 C 1.39486 * 119.82855 * 324.05356 * 11 10 8 13 13 C 1.36370 * 120.16515 * 180.29933 * 12 11 10 14 14 C 1.40876 * 119.82773 * 359.48291 * 13 12 11 15 15 C 1.41160 * 120.16091 * 180.25102 * 14 13 12 16 16 H 1.07993 * 119.99606 * 205.02487 * 15 14 13 17 17 C 1.39904 * 120.00083 * 25.02497 * 15 14 13 18 18 N 1.30878 * 119.99809 * 17.77995 * 17 15 14 19 19 Si 1.86795 * 120.00190 * 197.77450 * 17 15 14 20 20 H 1.48501 * 109.47012 * 94.98303 * 19 17 15 21 21 H 1.48500 * 109.47567 * 214.98476 * 19 17 15 22 22 H 1.48504 * 109.46924 * 334.98548 * 19 17 15 23 23 C 1.40865 * 119.67384 * 0.51475 * 14 13 12 24 24 C 1.36379 * 119.82607 * 359.73526 * 23 14 13 25 25 H 1.09002 * 109.47300 * 300.00044 * 1 2 3 26 26 H 1.09004 * 109.47436 * 59.99511 * 1 2 3 27 27 H 1.08993 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46843 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47472 * 300.00020 * 3 2 1 30 30 H 1.09004 * 109.47289 * 60.00536 * 3 2 1 31 31 H 1.08993 * 109.47368 * 300.00172 * 4 2 1 32 32 H 1.09002 * 109.47274 * 60.00402 * 4 2 1 33 33 H 1.09004 * 109.46621 * 179.97438 * 4 2 1 34 34 H 1.09008 * 109.47261 * 300.00147 * 5 2 1 35 35 H 1.08994 * 109.47648 * 179.97438 * 5 2 1 36 36 H 1.09010 * 109.46820 * 60.00448 * 6 5 2 37 37 H 1.08995 * 109.47781 * 300.00643 * 6 5 2 38 38 H 1.09004 * 109.46908 * 60.00014 * 7 6 5 39 39 H 1.09004 * 109.47079 * 300.00915 * 7 6 5 40 40 H 0.97007 * 119.99967 * 5.17437 * 10 8 7 41 41 H 1.07998 * 119.91418 * 0.02562 * 12 11 10 42 42 H 1.08005 * 120.08508 * 179.69974 * 13 12 11 43 43 H 0.97000 * 119.99698 * 179.97438 * 18 17 15 44 44 H 1.07998 * 120.08712 * 179.71205 * 23 14 13 45 45 H 1.07999 * 119.91122 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 6 1.5299 -2.1638 1.2491 7 6 2.0404 -2.8853 2.4980 8 6 1.5385 -4.3063 2.4977 9 8 0.8408 -4.7027 1.5884 10 7 1.8642 -5.1362 3.5083 11 6 1.4920 -6.4769 3.4557 12 6 0.2707 -6.8361 2.8857 13 6 -0.1034 -8.1465 2.8361 14 6 0.7521 -9.1395 3.3526 15 6 0.3743 -10.4986 3.3000 16 1 0.7833 -11.2005 4.0115 17 6 -0.5301 -10.9361 2.3264 18 7 -0.7591 -10.2005 1.2684 19 14 -1.4105 -12.5701 2.5363 20 1 -2.7386 -12.3403 3.1596 21 1 -1.5910 -13.2095 1.2082 22 1 -0.6018 -13.4597 3.4081 23 6 1.9840 -8.7689 3.9266 24 6 2.3421 -7.4539 3.9737 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9563 0.8901 31 1 1.6765 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7208 -1.2495 34 1 1.6767 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2490 36 1 1.8933 -2.6776 0.3591 37 1 0.4400 -2.1638 1.2491 38 1 1.6776 -2.3716 3.3883 39 1 3.1305 -2.8853 2.4975 40 1 2.3581 -4.7996 4.2724 41 1 -0.3823 -6.0740 2.4867 42 1 -1.0516 -8.4227 2.3988 43 1 -1.3858 -10.5041 0.5931 44 1 2.6429 -9.5242 4.3288 45 1 3.2860 -7.1682 4.4139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103361357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:15 Heat of formation + Delta-G solvation = -67.309104 kcal Electronic energy + Delta-G solvation = -22265.173314 eV Core-core repulsion = 19052.243185 eV Total energy + Delta-G solvation = -3212.930129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.18185 -39.30557 -38.70255 -36.18990 -34.72778 -33.96253 -31.43551 -30.92478 -28.47164 -28.13833 -28.06524 -26.51679 -23.70081 -23.12980 -22.24286 -20.93192 -19.50479 -19.25398 -18.35033 -17.61992 -17.07311 -16.75564 -15.86969 -15.76993 -15.60076 -15.10213 -14.94640 -14.84237 -14.55140 -14.41039 -13.94347 -13.73886 -13.42420 -13.33093 -13.12762 -12.82383 -12.74323 -12.58709 -12.53267 -12.49835 -12.43783 -12.32340 -11.73526 -11.72307 -11.68390 -11.34862 -11.28751 -11.23396 -11.20761 -10.69824 -10.38561 -9.46114 -8.88111 -8.62451 -6.27760 0.82921 1.13266 1.36944 1.45425 1.52103 1.86596 2.19911 2.44788 2.75800 3.72057 3.80889 3.84851 3.95801 4.05946 4.22498 4.30869 4.43595 4.48021 4.66016 4.69869 4.70188 4.81966 4.86336 4.88965 4.96780 4.99715 5.00315 5.10215 5.11675 5.13326 5.20986 5.25402 5.26063 5.30482 5.38720 5.46187 5.50320 5.58209 5.63297 5.68315 5.88321 6.09025 6.11751 6.34195 6.67797 6.80085 6.91841 7.01146 7.50850 8.32753 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028582 B = 0.002759 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.401223 B =10147.554885 C =10830.637475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.136 4.136 4 C -0.146 4.146 5 C -0.100 4.100 6 C -0.106 4.106 7 C -0.124 4.124 8 C 0.489 3.511 9 O -0.583 6.583 10 N -0.647 5.647 11 C 0.005 3.995 12 C -0.101 4.101 13 C -0.184 4.184 14 C 0.072 3.928 15 C -0.494 4.494 16 H 0.082 0.918 17 C 0.029 3.971 18 N -0.830 5.830 19 Si 0.987 3.013 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.252 1.252 23 C -0.225 4.225 24 C -0.100 4.100 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.419 0.581 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.286 0.714 44 H 0.110 0.890 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.221 19.328 1.622 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.193 4.193 4 C -0.203 4.203 5 C -0.137 4.137 6 C -0.144 4.144 7 C -0.163 4.163 8 C 0.278 3.722 9 O -0.463 6.463 10 N -0.292 5.292 11 C -0.089 4.089 12 C -0.122 4.122 13 C -0.204 4.204 14 C 0.069 3.931 15 C -0.524 4.524 16 H 0.100 0.900 17 C -0.186 4.186 18 N -0.456 5.456 19 Si 0.807 3.193 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.176 1.176 23 C -0.245 4.245 24 C -0.119 4.119 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.256 0.744 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.645 19.101 0.750 19.932 hybrid contribution -0.553 -0.943 -0.097 1.097 sum 5.092 18.159 0.654 18.871 Atomic orbital electron populations 1.21944 0.95233 1.01196 1.01890 1.20565 0.95327 0.96088 0.95221 1.21827 1.01201 0.94301 1.02013 1.21948 1.01174 0.99810 0.97369 1.21614 1.01108 0.93247 0.97773 1.21425 1.00639 0.95874 0.96419 1.21715 1.03824 0.88741 1.02057 1.21826 0.79998 0.89598 0.80728 1.90693 1.39229 1.78249 1.38118 1.42982 1.56832 1.06984 1.22452 1.17307 0.95856 0.84099 1.11596 1.20590 0.95770 0.95748 1.00047 1.20899 1.00488 0.92122 1.06897 1.18025 0.90972 0.93918 0.90137 1.19832 1.23969 0.94527 1.14044 0.89966 1.26893 0.95579 1.03164 0.92927 1.69957 1.28650 1.39902 1.07056 0.85131 0.78775 0.76573 0.78837 1.18836 1.19461 1.17580 1.20841 0.97313 0.95749 1.10607 1.20442 0.98103 0.91903 1.01491 0.92060 0.92662 0.93929 0.92116 0.92673 0.92052 0.93971 0.92644 0.92153 0.90537 0.90668 0.93168 0.92952 0.86165 0.86343 0.74383 0.88786 0.88775 0.90305 0.87149 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.12 71.98 0.58 -2.00 16 2 C -0.07 -1.16 0.80 -52.18 -0.04 -1.20 16 3 C -0.14 -1.69 8.47 71.98 0.61 -1.08 16 4 C -0.15 -2.63 8.12 71.98 0.58 -2.05 16 5 C -0.10 -1.55 4.27 30.59 0.13 -1.41 16 6 C -0.11 -2.37 3.80 30.59 0.12 -2.25 16 7 C -0.12 -2.54 5.70 29.85 0.17 -2.37 16 8 C 0.49 16.59 7.66 87.66 0.67 17.26 16 9 O -0.58 -26.62 13.42 -3.02 -0.04 -26.66 16 10 N -0.65 -21.53 5.30 -303.12 -1.61 -23.13 16 11 C 0.01 0.22 6.30 38.56 0.24 0.47 16 12 C -0.10 -5.36 8.62 22.13 0.19 -5.16 16 13 C -0.18 -10.59 8.63 22.48 0.19 -10.40 16 14 C 0.07 4.05 5.57 -21.27 -0.12 3.93 16 15 C -0.49 -27.41 9.03 23.39 0.21 -27.20 16 16 H 0.08 4.30 7.91 -2.91 -0.02 4.28 16 17 C 0.03 1.51 5.13 85.24 0.44 1.95 16 18 N -0.83 -46.51 10.98 21.82 0.24 -46.27 16 19 Si 0.99 39.60 29.59 68.60 2.03 41.63 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 23 C -0.23 -11.03 9.74 22.48 0.22 -10.81 16 24 C -0.10 -4.25 9.90 22.13 0.22 -4.03 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.04 0.93 6.43 -2.39 -0.02 0.91 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.04 0.93 6.43 -2.39 -0.02 0.92 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 1.35 6.39 -2.38 -0.02 1.34 16 37 H 0.05 1.38 6.39 -2.39 -0.02 1.37 16 38 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.42 9.72 8.82 -92.70 -0.82 8.91 16 41 H 0.09 5.10 6.24 -2.91 -0.02 5.08 16 42 H 0.09 5.75 6.19 -2.91 -0.02 5.73 16 43 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 44 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 45 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -71.29 359.25 5.20 -66.09 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: 0.15 Total: 34.70 kcal Atomic # 6 Polarization: -50.78 SS G_CDS: 4.42 Total: -46.36 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -1.37 Total: -69.41 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.04 Total: -26.66 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -71.29 5.20 -66.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103361357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.216 kcal (2) G-P(sol) polarization free energy of solvation -71.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds