Wall clock time and date at job start Tue Mar 31 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46998 * 2 1 4 4 C 1.38237 * 119.99856 * 269.73085 * 3 2 1 5 5 C 1.38241 * 119.99759 * 179.78725 * 4 3 2 6 6 C 1.38235 * 119.99716 * 0.43828 * 5 4 3 7 7 C 1.50706 * 119.99713 * 179.83324 * 6 5 4 8 8 H 1.09002 * 109.47104 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46855 * 59.97893 * 7 6 5 10 10 C 1.50690 * 109.47199 * 299.97887 * 7 6 5 11 11 O 1.21285 * 120.00301 * 15.88883 * 10 7 6 12 12 N 1.34778 * 120.00318 * 195.88771 * 10 7 6 13 13 C 1.46494 * 120.00336 * 183.98412 * 12 10 7 14 14 C 1.46505 * 119.99783 * 3.98545 * 12 10 7 15 15 H 1.09002 * 109.47131 * 354.42164 * 14 12 10 16 16 C 1.52995 * 109.47291 * 114.42205 * 14 12 10 17 17 C 1.50701 * 109.47014 * 234.42518 * 14 12 10 18 18 H 1.07997 * 120.00277 * 0.02562 * 17 14 12 19 19 C 1.37882 * 119.99971 * 179.97438 * 17 14 12 20 20 N 1.31515 * 119.99724 * 359.97438 * 19 17 14 21 21 Si 1.86788 * 120.00096 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47341 * 89.99832 * 21 19 17 23 23 H 1.48507 * 109.47259 * 210.00197 * 21 19 17 24 24 H 1.48503 * 109.47287 * 330.00091 * 21 19 17 25 25 C 1.38231 * 120.00416 * 359.81079 * 6 5 4 26 26 C 1.38232 * 120.00198 * 89.99910 * 3 2 1 27 27 H 1.09005 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47246 * 299.99634 * 1 2 3 29 29 H 1.09005 * 109.47406 * 60.00206 * 1 2 3 30 30 H 1.08994 * 109.46997 * 120.00011 * 2 1 3 31 31 H 1.08995 * 109.46766 * 240.00142 * 2 1 3 32 32 H 1.07997 * 120.00371 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.99973 * 180.27256 * 5 4 3 34 34 H 1.08997 * 109.47157 * 54.73086 * 9 7 6 35 35 H 1.09002 * 109.46895 * 174.72568 * 9 7 6 36 36 H 1.08997 * 109.47323 * 294.72331 * 9 7 6 37 37 H 1.09007 * 109.47350 * 94.12627 * 13 12 10 38 38 H 1.09004 * 109.47356 * 214.11966 * 13 12 10 39 39 H 1.09000 * 109.47267 * 334.12252 * 13 12 10 40 40 H 1.09002 * 109.47431 * 180.02562 * 16 14 12 41 41 H 1.09000 * 109.47738 * 300.00643 * 16 14 12 42 42 H 1.09004 * 109.46639 * 60.00235 * 16 14 12 43 43 H 0.97003 * 120.00227 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.00341 * 180.02562 * 25 6 5 45 45 H 1.08005 * 119.99732 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3754 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0277 9 6 2.4475 6.3448 -0.7222 10 6 4.7833 5.5128 -0.7095 11 8 5.1407 4.5912 -1.4123 12 7 5.5740 6.5944 -0.5631 13 6 6.8239 6.6960 -1.3203 14 6 5.1835 7.6686 0.3535 15 1 4.1877 7.4658 0.7476 16 6 6.1839 7.7422 1.5087 17 6 5.1731 8.9813 -0.3866 18 1 5.4311 9.0124 -1.4348 19 6 4.8331 10.1426 0.2744 20 7 4.5175 10.1046 1.5505 21 14 4.8195 11.7697 -0.6430 22 1 3.4721 11.9994 -1.2234 23 1 5.1477 12.8711 0.2975 24 1 5.8279 11.7321 -1.7325 25 6 2.7234 3.3759 1.1971 26 6 2.2627 2.0725 1.1971 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0926 1.5599 -2.1325 33 1 2.9045 3.8845 -2.1324 34 1 1.4644 6.2268 -0.2664 35 1 2.7629 7.3850 -0.6411 36 1 2.3970 6.0613 -1.7734 37 1 6.6477 7.2554 -2.2392 38 1 7.5723 7.2120 -0.7188 39 1 7.1819 5.6963 -1.5666 40 1 5.8931 8.5411 2.1908 41 1 6.1916 6.7927 2.0439 42 1 7.1797 7.9451 1.1145 43 1 4.2787 10.9216 2.0157 44 1 2.9023 3.8853 2.1325 45 1 2.0823 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:17 Heat of formation + Delta-G solvation = -29.064278 kcal Electronic energy + Delta-G solvation = -23445.703229 eV Core-core repulsion = 20234.431520 eV Total energy + Delta-G solvation = -3211.271709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.95015 -38.60543 -35.59373 -34.80097 -32.65687 -32.35195 -30.64810 -29.18281 -28.43948 -26.39716 -25.34327 -24.39926 -22.63316 -22.43097 -21.29175 -20.34297 -18.12707 -16.81989 -16.32954 -15.87514 -15.28546 -15.20312 -14.69682 -14.39845 -14.22774 -13.69728 -13.63907 -13.32610 -13.16682 -12.86568 -12.69307 -12.61006 -12.26308 -11.80622 -11.65639 -11.60241 -11.41276 -11.30356 -11.23709 -11.05757 -10.97593 -10.89757 -10.71468 -10.55670 -10.42368 -10.28809 -10.17037 -9.35336 -8.92511 -8.57766 -8.54283 -8.22896 -7.60900 -6.20290 -4.28365 1.59103 1.72339 3.20203 3.27922 3.30271 3.40675 3.87216 4.16874 4.31846 4.79833 4.89683 5.07532 5.11657 5.18371 5.24200 5.32098 5.41042 5.51912 5.61299 5.70094 5.75765 5.77157 5.83480 6.00558 6.07091 6.10394 6.22761 6.26792 6.30674 6.34939 6.39565 6.47031 6.58202 6.65301 6.74073 6.75159 6.83525 6.94721 7.01232 7.17705 7.29092 7.41064 7.65140 7.83126 8.09615 8.46864 8.74406 9.02714 9.40129 10.84554 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026814 B = 0.003775 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.995088 B = 7415.187943 C = 7653.791435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.092 4.092 4 C -0.125 4.125 5 C -0.074 4.074 6 C -0.063 4.063 7 C -0.069 4.069 8 H 0.100 0.900 9 C -0.139 4.139 10 C 0.515 3.485 11 O -0.569 6.569 12 N -0.591 5.591 13 C 0.097 3.903 14 C 0.251 3.749 15 H 0.058 0.942 16 C -0.153 4.153 17 C -0.527 4.527 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.888 5.888 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.112 4.112 26 C -0.125 4.125 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.012 0.988 42 H 0.032 0.968 43 H 0.264 0.736 44 H 0.120 0.880 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.584 -12.732 -0.669 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.143 4.143 5 C -0.092 4.092 6 C -0.063 4.063 7 C -0.091 4.091 8 H 0.119 0.881 9 C -0.196 4.196 10 C 0.303 3.697 11 O -0.450 6.450 12 N -0.321 5.321 13 C -0.046 4.046 14 C 0.150 3.850 15 H 0.076 0.924 16 C -0.211 4.211 17 C -0.566 4.566 18 H 0.080 0.920 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.130 4.130 26 C -0.143 4.143 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.031 0.969 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.138 0.862 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.429 -13.043 -0.870 14.155 hybrid contribution 0.142 1.169 -0.331 1.223 sum -5.287 -11.874 -1.202 13.053 Atomic orbital electron populations 1.21745 0.95010 1.01286 1.02247 1.20496 0.95943 0.93080 1.02438 1.19793 1.00093 0.95948 0.93356 1.20941 1.01114 0.95073 0.97151 1.20959 0.95994 0.94232 0.97996 1.19526 0.98600 0.94877 0.93345 1.20238 0.93793 0.92996 1.02036 0.88147 1.21785 0.97495 1.00812 0.99552 1.20304 0.85803 0.81909 0.81724 1.90594 1.74623 1.37788 1.41997 1.48212 1.20935 1.19987 1.42939 1.21339 0.86619 1.00803 0.95859 1.19139 0.95121 0.84326 0.86428 0.92446 1.22148 0.99062 0.99872 1.00062 1.21308 1.47320 0.91284 0.96664 0.91973 1.24876 0.94713 0.99092 0.94878 1.69854 1.45642 1.28485 1.08607 0.86504 0.78518 0.82917 0.79575 1.20526 1.21114 1.19874 1.21030 0.99732 0.94778 0.97451 1.20855 1.01392 0.94871 0.97179 0.92748 0.92587 0.92587 0.91376 0.91352 0.86657 0.86060 0.92132 0.89421 0.92748 0.93552 0.91649 0.92185 0.88680 0.96935 0.94840 0.92557 0.86198 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.92 16 2 C -0.08 -0.82 6.07 -27.88 -0.17 -0.99 16 3 C -0.09 -1.20 5.13 -104.62 -0.54 -1.74 16 4 C -0.12 -1.78 9.70 -39.58 -0.38 -2.16 16 5 C -0.07 -1.21 7.89 -39.58 -0.31 -1.53 16 6 C -0.06 -1.06 4.56 -104.62 -0.48 -1.54 16 7 C -0.07 -1.26 2.03 -92.93 -0.19 -1.45 16 8 H 0.10 1.82 6.53 -51.93 -0.34 1.48 16 9 C -0.14 -2.39 8.65 37.16 0.32 -2.07 16 10 C 0.52 10.77 6.83 -10.99 -0.08 10.69 16 11 O -0.57 -12.86 14.15 5.55 0.08 -12.78 16 12 N -0.59 -12.63 2.75 -175.26 -0.48 -13.11 16 13 C 0.10 1.90 9.60 59.84 0.57 2.48 16 14 C 0.25 5.72 1.90 -69.08 -0.13 5.59 16 15 H 0.06 1.35 4.60 -51.93 -0.24 1.11 16 16 C -0.15 -3.43 9.03 37.15 0.34 -3.09 16 17 C -0.53 -13.13 8.31 -34.44 -0.29 -13.42 16 18 H 0.06 1.58 7.23 -52.49 -0.38 1.20 16 19 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -22.98 11.32 55.43 0.63 -22.35 16 21 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.11 -1.69 9.67 -39.59 -0.38 -2.07 16 26 C -0.12 -1.68 9.70 -39.58 -0.38 -2.06 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.12 2.07 7.19 -52.49 -0.38 1.69 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.70 6.70 -51.93 -0.35 1.36 16 36 H 0.05 0.90 7.58 -51.93 -0.39 0.51 16 37 H 0.05 0.89 7.85 -51.92 -0.41 0.49 16 38 H 0.06 1.23 6.74 -51.93 -0.35 0.88 16 39 H 0.06 1.14 7.25 -51.93 -0.38 0.76 16 40 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.03 0.72 6.89 -51.93 -0.36 0.37 16 43 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 44 H 0.12 1.64 7.95 -52.49 -0.42 1.22 16 45 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -27.56 357.24 -8.47 -36.04 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.23 Total: 4.60 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.82 Total: -12.69 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.14 Total: -35.46 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.56 -8.47 -36.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.971 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds