Wall clock time and date at job start Tue Mar 31 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46998 * 2 1 4 4 C 1.38237 * 119.99856 * 269.73085 * 3 2 1 5 5 C 1.38241 * 119.99759 * 179.78725 * 4 3 2 6 6 C 1.38235 * 119.99716 * 0.43828 * 5 4 3 7 7 C 1.50706 * 119.99713 * 179.83324 * 6 5 4 8 8 H 1.09002 * 109.47104 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46855 * 59.97893 * 7 6 5 10 10 C 1.50690 * 109.47199 * 299.97887 * 7 6 5 11 11 O 1.21285 * 120.00301 * 15.88883 * 10 7 6 12 12 N 1.34778 * 120.00318 * 195.88771 * 10 7 6 13 13 C 1.46494 * 120.00336 * 183.98412 * 12 10 7 14 14 C 1.46505 * 119.99783 * 3.98545 * 12 10 7 15 15 H 1.09002 * 109.47131 * 354.42164 * 14 12 10 16 16 C 1.52995 * 109.47291 * 114.42205 * 14 12 10 17 17 C 1.50701 * 109.47014 * 234.42518 * 14 12 10 18 18 H 1.07997 * 120.00277 * 0.02562 * 17 14 12 19 19 C 1.37882 * 119.99971 * 179.97438 * 17 14 12 20 20 N 1.31515 * 119.99724 * 359.97438 * 19 17 14 21 21 Si 1.86788 * 120.00096 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47341 * 89.99832 * 21 19 17 23 23 H 1.48507 * 109.47259 * 210.00197 * 21 19 17 24 24 H 1.48503 * 109.47287 * 330.00091 * 21 19 17 25 25 C 1.38231 * 120.00416 * 359.81079 * 6 5 4 26 26 C 1.38232 * 120.00198 * 89.99910 * 3 2 1 27 27 H 1.09005 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47246 * 299.99634 * 1 2 3 29 29 H 1.09005 * 109.47406 * 60.00206 * 1 2 3 30 30 H 1.08994 * 109.46997 * 120.00011 * 2 1 3 31 31 H 1.08995 * 109.46766 * 240.00142 * 2 1 3 32 32 H 1.07997 * 120.00371 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.99973 * 180.27256 * 5 4 3 34 34 H 1.08997 * 109.47157 * 54.73086 * 9 7 6 35 35 H 1.09002 * 109.46895 * 174.72568 * 9 7 6 36 36 H 1.08997 * 109.47323 * 294.72331 * 9 7 6 37 37 H 1.09007 * 109.47350 * 94.12627 * 13 12 10 38 38 H 1.09004 * 109.47356 * 214.11966 * 13 12 10 39 39 H 1.09000 * 109.47267 * 334.12252 * 13 12 10 40 40 H 1.09002 * 109.47431 * 180.02562 * 16 14 12 41 41 H 1.09000 * 109.47738 * 300.00643 * 16 14 12 42 42 H 1.09004 * 109.46639 * 60.00235 * 16 14 12 43 43 H 0.97003 * 120.00227 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.00341 * 180.02562 * 25 6 5 45 45 H 1.08005 * 119.99732 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3754 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0277 9 6 2.4475 6.3448 -0.7222 10 6 4.7833 5.5128 -0.7095 11 8 5.1407 4.5912 -1.4123 12 7 5.5740 6.5944 -0.5631 13 6 6.8239 6.6960 -1.3203 14 6 5.1835 7.6686 0.3535 15 1 4.1877 7.4658 0.7476 16 6 6.1839 7.7422 1.5087 17 6 5.1731 8.9813 -0.3866 18 1 5.4311 9.0124 -1.4348 19 6 4.8331 10.1426 0.2744 20 7 4.5175 10.1046 1.5505 21 14 4.8195 11.7697 -0.6430 22 1 3.4721 11.9994 -1.2234 23 1 5.1477 12.8711 0.2975 24 1 5.8279 11.7321 -1.7325 25 6 2.7234 3.3759 1.1971 26 6 2.2627 2.0725 1.1971 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0926 1.5599 -2.1325 33 1 2.9045 3.8845 -2.1324 34 1 1.4644 6.2268 -0.2664 35 1 2.7629 7.3850 -0.6411 36 1 2.3970 6.0613 -1.7734 37 1 6.6477 7.2554 -2.2392 38 1 7.5723 7.2120 -0.7188 39 1 7.1819 5.6963 -1.5666 40 1 5.8931 8.5411 2.1908 41 1 6.1916 6.7927 2.0439 42 1 7.1797 7.9451 1.1145 43 1 4.2787 10.9216 2.0157 44 1 2.9023 3.8853 2.1325 45 1 2.0823 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:16 Heat of formation + Delta-G solvation = -40.718448 kcal Electronic energy + Delta-G solvation = -23446.208592 eV Core-core repulsion = 20234.431520 eV Total energy + Delta-G solvation = -3211.777072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39803 -39.92693 -37.33627 -35.98814 -34.53457 -33.47601 -31.77094 -31.00701 -29.53363 -27.99103 -27.26166 -25.57633 -23.86172 -23.60673 -22.90893 -21.49435 -19.73025 -18.56338 -17.96674 -17.30887 -16.64084 -16.56415 -16.16255 -15.95935 -15.64928 -14.83276 -14.75107 -14.59255 -14.53159 -14.39913 -14.04403 -13.92545 -13.48085 -13.28902 -13.26645 -13.07924 -12.85073 -12.80921 -12.71086 -12.52944 -12.46028 -12.23051 -12.14475 -12.04267 -11.91528 -11.61096 -11.58296 -11.18982 -10.60501 -10.45837 -9.72165 -9.37826 -9.35083 -8.13344 -6.26767 0.45069 0.58718 1.43238 1.46676 1.54126 1.74542 2.32590 2.48353 2.93165 3.15887 3.68477 3.75101 3.95143 4.01432 4.18479 4.19594 4.31666 4.43574 4.53993 4.57082 4.63337 4.66492 4.68676 4.73712 4.77343 4.86887 4.93290 4.94017 4.97271 5.06075 5.10895 5.12261 5.18200 5.25334 5.28989 5.39648 5.43471 5.55382 5.60279 5.76418 5.77559 5.81060 5.95532 6.18074 6.21814 6.68259 6.85114 7.31627 7.46664 8.90287 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026814 B = 0.003775 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.995088 B = 7415.187943 C = 7653.791435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.088 4.088 4 C -0.131 4.131 5 C -0.091 4.091 6 C -0.085 4.085 7 C -0.063 4.063 8 H 0.097 0.903 9 C -0.129 4.129 10 C 0.510 3.490 11 O -0.588 6.588 12 N -0.597 5.597 13 C 0.097 3.903 14 C 0.257 3.743 15 H 0.050 0.950 16 C -0.144 4.144 17 C -0.537 4.537 18 H 0.053 0.947 19 C 0.030 3.970 20 N -0.907 5.907 21 Si 0.951 3.049 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.121 4.121 26 C -0.125 4.125 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.024 0.976 42 H 0.034 0.966 43 H 0.266 0.734 44 H 0.130 0.870 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.346 -14.123 -0.343 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.149 4.149 5 C -0.109 4.109 6 C -0.086 4.086 7 C -0.084 4.084 8 H 0.115 0.885 9 C -0.187 4.187 10 C 0.299 3.701 11 O -0.470 6.470 12 N -0.327 5.327 13 C -0.046 4.046 14 C 0.156 3.844 15 H 0.068 0.932 16 C -0.202 4.202 17 C -0.576 4.576 18 H 0.071 0.929 19 C -0.171 4.171 20 N -0.546 5.546 21 Si 0.777 3.223 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.139 4.139 26 C -0.143 4.143 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.151 0.849 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.148 0.852 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.189 -14.436 -0.549 15.717 hybrid contribution 0.372 1.518 -0.443 1.624 sum -5.817 -12.919 -0.991 14.203 Atomic orbital electron populations 1.21728 0.93998 1.02437 1.01890 1.20571 0.96686 0.90975 1.03589 1.20200 0.98525 0.97390 0.92684 1.21186 1.00694 0.94332 0.98683 1.20938 0.97377 0.95384 0.97246 1.19485 1.00415 0.94300 0.94361 1.20171 0.92439 0.94493 1.01287 0.88480 1.21679 0.98238 0.98952 0.99782 1.20801 0.86504 0.81313 0.81465 1.90570 1.75224 1.38331 1.42865 1.48267 1.21598 1.19859 1.42978 1.21388 0.86247 1.01152 0.95797 1.18953 0.94921 0.83982 0.86581 0.93188 1.22008 0.98820 0.99829 0.99575 1.21460 1.47329 0.92414 0.96371 0.92921 1.25458 0.94517 1.01577 0.95520 1.69939 1.46078 1.29124 1.09448 0.85667 0.78349 0.79776 0.78500 1.20341 1.20835 1.19880 1.21232 0.99846 0.95678 0.97165 1.21203 1.00253 0.94221 0.98597 0.90881 0.92775 0.93158 0.89983 0.90520 0.84907 0.87681 0.90166 0.91927 0.92725 0.93617 0.91014 0.91713 0.90476 0.95645 0.94727 0.92483 0.85239 0.83852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.89 71.98 0.71 -1.38 16 2 C -0.08 -1.36 6.07 29.85 0.18 -1.18 16 3 C -0.09 -2.10 5.13 -19.87 -0.10 -2.20 16 4 C -0.13 -3.57 9.70 22.27 0.22 -3.36 16 5 C -0.09 -3.00 7.89 22.27 0.18 -2.82 16 6 C -0.09 -2.86 4.56 -19.87 -0.09 -2.95 16 7 C -0.06 -2.31 2.03 -12.29 -0.02 -2.33 16 8 H 0.10 3.58 6.53 -2.39 -0.02 3.56 16 9 C -0.13 -4.51 8.65 71.98 0.62 -3.89 16 10 C 0.51 21.59 6.83 87.65 0.60 22.19 16 11 O -0.59 -26.86 14.15 -3.05 -0.04 -26.90 16 12 N -0.60 -25.74 2.75 -826.79 -2.28 -28.02 16 13 C 0.10 3.81 9.60 127.77 1.23 5.04 16 14 C 0.26 11.83 1.90 44.24 0.08 11.92 16 15 H 0.05 2.39 4.60 -2.39 -0.01 2.38 16 16 C -0.14 -6.43 9.03 71.98 0.65 -5.78 16 17 C -0.54 -26.93 8.31 25.60 0.21 -26.72 16 18 H 0.05 2.69 7.23 -2.91 -0.02 2.67 16 19 C 0.03 1.51 5.30 84.66 0.45 1.96 16 20 N -0.91 -47.03 11.32 21.45 0.24 -46.78 16 21 Si 0.95 40.74 29.54 68.60 2.03 42.77 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C -0.12 -3.52 9.67 22.27 0.22 -3.31 16 26 C -0.12 -3.07 9.70 22.27 0.22 -2.85 16 27 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 31 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 32 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.11 3.69 7.19 -2.91 -0.02 3.67 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.06 2.49 6.70 -2.39 -0.02 2.48 16 36 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 37 H 0.05 1.77 7.85 -2.38 -0.02 1.75 16 38 H 0.07 2.68 6.74 -2.38 -0.02 2.67 16 39 H 0.06 2.46 7.25 -2.39 -0.02 2.44 16 40 H 0.08 3.76 6.07 -2.39 -0.01 3.74 16 41 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.03 1.49 6.89 -2.39 -0.02 1.47 16 43 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 44 H 0.13 3.40 7.95 -2.91 -0.02 3.37 16 45 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -57.82 357.24 6.25 -51.57 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.96 Total: 25.03 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 5.34 Total: -17.66 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -2.03 Total: -74.80 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.04 Total: -26.90 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -57.82 6.25 -51.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.851 kcal (2) G-P(sol) polarization free energy of solvation -57.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds