Wall clock time and date at job start Tue Mar 31 2020 06:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47303 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47532 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47216 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47216 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47178 * 179.97438 * 7 6 5 9 9 O 1.21273 * 120.00134 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99732 * 180.02562 * 8 7 6 11 11 C 1.39236 * 119.99753 * 184.29399 * 10 8 7 12 12 C 1.39480 * 119.83106 * 324.70394 * 11 10 8 13 13 C 1.36375 * 120.16649 * 180.30100 * 12 11 10 14 14 C 1.40868 * 119.82898 * 359.48341 * 13 12 11 15 15 C 1.41155 * 120.16304 * 180.25634 * 14 13 12 16 16 H 1.08007 * 119.99709 * 215.01619 * 15 14 13 17 17 C 1.39906 * 120.00720 * 35.00344 * 15 14 13 18 18 N 1.30873 * 119.99293 * 355.55656 * 17 15 14 19 19 Si 1.86797 * 120.00240 * 175.54751 * 17 15 14 20 20 H 1.48494 * 109.47220 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46828 * 120.00790 * 19 17 15 22 22 H 1.48499 * 109.47027 * 240.00626 * 19 17 15 23 23 C 1.40869 * 119.67371 * 0.51350 * 14 13 12 24 24 C 1.36379 * 119.82277 * 359.73907 * 23 14 13 25 25 H 1.08997 * 109.47518 * 299.99822 * 1 2 3 26 26 H 1.09004 * 109.47342 * 60.00208 * 1 2 3 27 27 H 1.09002 * 109.47182 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46893 * 240.00138 * 2 1 3 29 29 H 1.08996 * 109.46999 * 120.00350 * 2 1 3 30 30 H 1.09005 * 109.47185 * 60.00317 * 3 2 1 31 31 H 1.09002 * 109.47741 * 300.00424 * 3 2 1 32 32 H 1.09006 * 109.47180 * 60.00349 * 4 3 2 33 33 H 1.09001 * 109.47533 * 300.00574 * 4 3 2 34 34 H 1.08997 * 109.47495 * 59.99766 * 5 4 3 35 35 H 1.09005 * 109.46934 * 299.99657 * 5 4 3 36 36 H 1.08997 * 109.47406 * 59.99312 * 6 5 4 37 37 H 1.09005 * 109.46562 * 299.99485 * 6 5 4 38 38 H 1.08997 * 109.47028 * 59.99112 * 7 6 5 39 39 H 1.08996 * 109.46668 * 299.99805 * 7 6 5 40 40 H 0.97003 * 120.00222 * 4.28302 * 10 8 7 41 41 H 1.08000 * 119.91840 * 0.02701 * 12 11 10 42 42 H 1.08003 * 120.08232 * 179.70255 * 13 12 11 43 43 H 0.97006 * 119.99623 * 179.97438 * 18 17 15 44 44 H 1.07995 * 120.08862 * 179.71587 * 23 14 13 45 45 H 1.08000 * 119.90940 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6100 2.8850 0.0013 7 6 6.1200 4.3275 0.0026 8 6 7.6270 4.3275 0.0032 9 8 8.2334 3.2772 0.0032 10 7 8.3009 5.4947 0.0049 11 6 9.6903 5.4965 -0.0848 12 6 10.4266 4.4835 0.5295 13 6 11.7881 4.4820 0.4512 14 6 12.4501 5.5008 -0.2616 15 6 13.8587 5.5031 -0.3517 16 1 14.3979 6.4389 -0.3585 17 6 14.5567 4.2932 -0.4321 18 7 13.9119 3.1584 -0.3361 19 14 16.4086 4.2976 -0.6764 20 1 16.8944 5.6987 -0.7535 21 1 17.0603 3.6102 0.4673 22 1 16.7432 3.5872 -1.9368 23 6 11.6997 6.5204 -0.8794 24 6 10.3390 6.5114 -0.7880 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 3.7163 3.3986 0.8912 35 1 3.7170 3.3991 -0.8888 36 1 5.9734 2.3715 -0.8888 37 1 5.9732 2.3708 0.8912 38 1 5.7566 4.8405 0.8929 39 1 5.7567 4.8420 -0.8869 40 1 7.8179 6.3335 0.0684 41 1 9.9174 3.7009 1.0723 42 1 12.3571 3.6996 0.9314 43 1 14.3957 2.3194 -0.3922 44 1 12.2005 7.3073 -1.4236 45 1 9.7622 7.2922 -1.2614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103460289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:19 Heat of formation + Delta-G solvation = -59.016837 kcal Electronic energy + Delta-G solvation = -21506.089872 eV Core-core repulsion = 18293.519323 eV Total energy + Delta-G solvation = -3212.570550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.65403 -37.41135 -36.73843 -34.53594 -34.14439 -32.85951 -30.99151 -29.47973 -28.94824 -27.02570 -24.88723 -23.18177 -21.49860 -21.23595 -21.09248 -20.53952 -19.40244 -17.26540 -16.82182 -16.32295 -16.11615 -15.48806 -15.08994 -14.37987 -14.24758 -14.04893 -13.88610 -13.37337 -13.32569 -12.86485 -12.72207 -12.39564 -12.18295 -12.11014 -11.99394 -11.67542 -11.45310 -11.39020 -11.24844 -11.13469 -11.04154 -10.88083 -10.79016 -10.61138 -10.57615 -10.47433 -9.89047 -9.83298 -9.40485 -8.96443 -8.68767 -7.49909 -6.85469 -6.56965 -4.30699 2.61838 3.02743 3.11903 3.12268 3.17491 3.39273 3.78533 4.01012 4.47089 4.63949 4.74406 4.78477 4.90358 4.94199 5.03848 5.16758 5.24766 5.39780 5.41256 5.48987 5.57651 5.66553 5.69112 5.69406 5.73551 5.84253 5.87339 5.94949 6.01619 6.13847 6.15768 6.26159 6.37989 6.41529 6.84224 7.03663 7.07323 7.23332 7.33036 7.66401 7.71247 8.01790 8.12268 8.24132 8.37206 8.70032 8.83298 8.96118 9.04893 10.34221 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032052 B = 0.002239 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.374402 B =12501.992223 C =13227.736852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.104 4.104 7 C -0.138 4.138 8 C 0.495 3.505 9 O -0.528 6.528 10 N -0.657 5.657 11 C 0.006 3.994 12 C -0.094 4.094 13 C -0.144 4.144 14 C 0.098 3.902 15 C -0.463 4.463 16 H 0.076 0.924 17 C 0.068 3.932 18 N -0.808 5.808 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.204 4.204 24 C -0.115 4.115 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.394 0.606 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.277 0.723 44 H 0.096 0.904 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.194 -0.970 1.060 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.157 4.157 4 C -0.159 4.159 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.178 4.178 8 C 0.282 3.718 9 O -0.405 6.405 10 N -0.300 5.300 11 C -0.086 4.086 12 C -0.114 4.114 13 C -0.164 4.164 14 C 0.096 3.904 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.147 4.147 18 N -0.435 5.435 19 Si 0.740 3.260 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.224 4.224 24 C -0.136 4.136 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.227 0.773 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.732 -1.993 1.044 19.860 hybrid contribution 0.565 0.401 -0.278 0.747 sum -19.166 -1.591 0.766 19.248 Atomic orbital electron populations 1.21783 0.96079 1.01467 1.01698 1.21553 0.95666 0.97174 1.02072 1.21630 0.95677 0.96559 1.01883 1.21611 0.94953 0.96990 1.02361 1.21616 0.95431 0.96783 1.01812 1.21340 0.94197 0.94958 1.03747 1.21663 0.92545 0.99833 1.03764 1.20694 0.89821 0.84095 0.77210 1.90705 1.69964 1.31257 1.48555 1.43064 1.06332 1.08137 1.72480 1.17319 0.80554 1.01773 1.09000 1.20652 0.94396 0.97195 0.99198 1.21309 0.92309 1.01554 1.01214 1.17735 0.93549 0.90654 0.88460 1.19510 0.91653 0.93200 1.45073 0.90616 1.25897 1.00686 0.95149 0.92948 1.69805 1.37365 0.98492 1.37875 0.86157 0.82085 0.79293 0.78473 1.18622 1.20010 1.20022 1.20688 0.92490 1.03012 1.06164 1.20082 0.94933 0.98317 1.00233 0.92836 0.92840 0.92915 0.92055 0.92058 0.92148 0.92138 0.91899 0.91909 0.92104 0.92108 0.91182 0.91211 0.89448 0.89383 0.77264 0.87484 0.85227 0.91160 0.88561 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.06 16 3 C -0.12 -0.89 5.21 -26.74 -0.14 -1.03 16 4 C -0.12 -1.04 5.21 -26.73 -0.14 -1.18 16 5 C -0.12 -1.05 5.21 -26.73 -0.14 -1.19 16 6 C -0.10 -1.23 4.50 -26.73 -0.12 -1.35 16 7 C -0.14 -1.61 5.70 -27.88 -0.16 -1.77 16 8 C 0.49 8.68 7.66 -10.99 -0.08 8.59 16 9 O -0.53 -11.78 13.40 5.56 0.07 -11.71 16 10 N -0.66 -11.58 5.30 -9.74 -0.05 -11.63 16 11 C 0.01 0.13 6.31 -83.57 -0.53 -0.40 16 12 C -0.09 -2.40 8.61 -39.79 -0.34 -2.74 16 13 C -0.14 -3.93 8.61 -39.26 -0.34 -4.27 16 14 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 15 C -0.46 -12.55 9.02 -37.85 -0.34 -12.89 16 16 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 17 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 18 N -0.81 -21.92 10.61 55.55 0.59 -21.33 16 19 Si 0.91 19.37 29.56 -169.99 -5.03 14.34 16 20 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 C -0.20 -4.99 9.74 -39.26 -0.38 -5.37 16 24 C -0.12 -2.56 9.90 -39.79 -0.39 -2.95 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.39 5.29 8.82 -40.82 -0.36 4.93 16 41 H 0.11 2.74 6.22 -52.49 -0.33 2.41 16 42 H 0.13 3.70 6.15 -52.48 -0.32 3.38 16 43 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 44 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 45 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -30.87 368.21 -10.19 -41.06 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.74 Total: 8.13 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -3.58 Total: -24.42 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.54 Total: -32.96 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.07 Total: -11.71 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.87 -10.19 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.955 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds