Wall clock time and date at job start Tue Mar 31 2020 06:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47303 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47532 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47216 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47216 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47178 * 179.97438 * 7 6 5 9 9 O 1.21273 * 120.00134 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99732 * 180.02562 * 8 7 6 11 11 C 1.39236 * 119.99753 * 184.29399 * 10 8 7 12 12 C 1.39480 * 119.83106 * 324.70394 * 11 10 8 13 13 C 1.36375 * 120.16649 * 180.30100 * 12 11 10 14 14 C 1.40868 * 119.82898 * 359.48341 * 13 12 11 15 15 C 1.41155 * 120.16304 * 180.25634 * 14 13 12 16 16 H 1.08007 * 119.99709 * 215.01619 * 15 14 13 17 17 C 1.39906 * 120.00720 * 35.00344 * 15 14 13 18 18 N 1.30873 * 119.99293 * 355.55656 * 17 15 14 19 19 Si 1.86797 * 120.00240 * 175.54751 * 17 15 14 20 20 H 1.48494 * 109.47220 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46828 * 120.00790 * 19 17 15 22 22 H 1.48499 * 109.47027 * 240.00626 * 19 17 15 23 23 C 1.40869 * 119.67371 * 0.51350 * 14 13 12 24 24 C 1.36379 * 119.82277 * 359.73907 * 23 14 13 25 25 H 1.08997 * 109.47518 * 299.99822 * 1 2 3 26 26 H 1.09004 * 109.47342 * 60.00208 * 1 2 3 27 27 H 1.09002 * 109.47182 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46893 * 240.00138 * 2 1 3 29 29 H 1.08996 * 109.46999 * 120.00350 * 2 1 3 30 30 H 1.09005 * 109.47185 * 60.00317 * 3 2 1 31 31 H 1.09002 * 109.47741 * 300.00424 * 3 2 1 32 32 H 1.09006 * 109.47180 * 60.00349 * 4 3 2 33 33 H 1.09001 * 109.47533 * 300.00574 * 4 3 2 34 34 H 1.08997 * 109.47495 * 59.99766 * 5 4 3 35 35 H 1.09005 * 109.46934 * 299.99657 * 5 4 3 36 36 H 1.08997 * 109.47406 * 59.99312 * 6 5 4 37 37 H 1.09005 * 109.46562 * 299.99485 * 6 5 4 38 38 H 1.08997 * 109.47028 * 59.99112 * 7 6 5 39 39 H 1.08996 * 109.46668 * 299.99805 * 7 6 5 40 40 H 0.97003 * 120.00222 * 4.28302 * 10 8 7 41 41 H 1.08000 * 119.91840 * 0.02701 * 12 11 10 42 42 H 1.08003 * 120.08232 * 179.70255 * 13 12 11 43 43 H 0.97006 * 119.99623 * 179.97438 * 18 17 15 44 44 H 1.07995 * 120.08862 * 179.71587 * 23 14 13 45 45 H 1.08000 * 119.90940 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6100 2.8850 0.0013 7 6 6.1200 4.3275 0.0026 8 6 7.6270 4.3275 0.0032 9 8 8.2334 3.2772 0.0032 10 7 8.3009 5.4947 0.0049 11 6 9.6903 5.4965 -0.0848 12 6 10.4266 4.4835 0.5295 13 6 11.7881 4.4820 0.4512 14 6 12.4501 5.5008 -0.2616 15 6 13.8587 5.5031 -0.3517 16 1 14.3979 6.4389 -0.3585 17 6 14.5567 4.2932 -0.4321 18 7 13.9119 3.1584 -0.3361 19 14 16.4086 4.2976 -0.6764 20 1 16.8944 5.6987 -0.7535 21 1 17.0603 3.6102 0.4673 22 1 16.7432 3.5872 -1.9368 23 6 11.6997 6.5204 -0.8794 24 6 10.3390 6.5114 -0.7880 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 3.7163 3.3986 0.8912 35 1 3.7170 3.3991 -0.8888 36 1 5.9734 2.3715 -0.8888 37 1 5.9732 2.3708 0.8912 38 1 5.7566 4.8405 0.8929 39 1 5.7567 4.8420 -0.8869 40 1 7.8179 6.3335 0.0684 41 1 9.9174 3.7009 1.0723 42 1 12.3571 3.6996 0.9314 43 1 14.3957 2.3194 -0.3922 44 1 12.2005 7.3073 -1.4236 45 1 9.7622 7.2922 -1.2614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103460289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:18 Heat of formation + Delta-G solvation = -75.045804 kcal Electronic energy + Delta-G solvation = -21506.784941 eV Core-core repulsion = 18293.519323 eV Total energy + Delta-G solvation = -3213.265618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19998 -39.13948 -37.53242 -36.17777 -35.07149 -34.66246 -31.94450 -31.38163 -30.67839 -28.02643 -26.53123 -24.21723 -23.20032 -22.59678 -21.86633 -21.64671 -20.90721 -19.23542 -18.37099 -17.66258 -17.16380 -16.95142 -16.38583 -15.78434 -15.42769 -15.31390 -14.89672 -14.80102 -14.50150 -14.12868 -14.03711 -13.95249 -13.60090 -13.39240 -13.07301 -12.90576 -12.89497 -12.76476 -12.61035 -12.32407 -12.09221 -11.95614 -11.77205 -11.73575 -11.66643 -11.47195 -11.32322 -11.29782 -11.18050 -10.71469 -10.42453 -9.46017 -8.74014 -8.50309 -6.33489 0.81425 1.12144 1.37979 1.43735 1.54308 1.85145 2.22984 2.42014 2.81580 3.67544 3.76069 3.86070 4.00973 4.18055 4.21392 4.24642 4.43290 4.45458 4.46842 4.53614 4.69708 4.75653 4.77748 4.89509 4.99367 5.00663 5.04467 5.04782 5.12396 5.15326 5.20346 5.24708 5.32545 5.33393 5.35088 5.43990 5.47680 5.53320 5.57892 5.70855 5.87810 6.08854 6.15189 6.35448 6.70485 6.77266 6.95660 7.02272 7.47785 8.43091 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032052 B = 0.002239 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.374402 B =12501.992223 C =13227.736852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.109 4.109 6 C -0.104 4.104 7 C -0.123 4.123 8 C 0.489 3.511 9 O -0.583 6.583 10 N -0.648 5.648 11 C 0.020 3.980 12 C -0.111 4.111 13 C -0.169 4.169 14 C 0.063 3.937 15 C -0.496 4.496 16 H 0.080 0.920 17 C 0.020 3.980 18 N -0.849 5.849 19 Si 0.992 3.008 20 H -0.253 1.253 21 H -0.268 1.268 22 H -0.270 1.270 23 C -0.209 4.209 24 C -0.109 4.109 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.420 0.580 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.282 0.718 44 H 0.113 0.887 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.286 1.099 0.342 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.152 4.152 4 C -0.161 4.161 5 C -0.146 4.146 6 C -0.142 4.142 7 C -0.162 4.162 8 C 0.279 3.721 9 O -0.463 6.463 10 N -0.293 5.293 11 C -0.073 4.073 12 C -0.132 4.132 13 C -0.189 4.189 14 C 0.060 3.940 15 C -0.527 4.527 16 H 0.098 0.902 17 C -0.191 4.191 18 N -0.477 5.477 19 Si 0.813 3.187 20 H -0.176 1.176 21 H -0.193 1.193 22 H -0.195 1.195 23 C -0.229 4.229 24 C -0.129 4.129 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.258 0.742 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.131 0.869 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.880 0.121 0.334 21.883 hybrid contribution 1.036 -0.248 -0.037 1.066 sum -20.844 -0.128 0.296 20.846 Atomic orbital electron populations 1.21773 0.95278 1.01820 1.02038 1.21572 0.96397 0.97080 1.01704 1.21586 0.94466 0.96752 1.02430 1.21615 0.96014 0.96959 1.01519 1.21547 0.92792 0.97038 1.03252 1.21319 0.96423 0.94818 1.01652 1.21708 0.87326 1.00289 1.06902 1.21858 0.92271 0.82910 0.75094 1.90700 1.71625 1.33284 1.50659 1.43017 1.04318 1.09817 1.72160 1.17416 0.83012 1.00208 1.06714 1.20674 0.93989 0.98273 1.00216 1.21174 0.93163 1.01875 1.02691 1.18082 0.94413 0.91811 0.89646 1.19796 0.92169 0.93977 1.46802 0.90191 1.26878 1.05823 0.94332 0.92032 1.69929 1.39451 0.99247 1.39100 0.85006 0.75501 0.79685 0.78517 1.17604 1.19277 1.19477 1.20973 0.93724 1.02479 1.05680 1.20467 0.94386 0.98881 0.99189 0.92466 0.92499 0.92628 0.92497 0.92455 0.91512 0.91557 0.92874 0.92791 0.90515 0.90627 0.93529 0.93351 0.85966 0.86100 0.74218 0.88667 0.87900 0.90803 0.86879 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.13 -1.70 5.93 30.59 0.18 -1.52 16 3 C -0.11 -1.48 5.21 30.59 0.16 -1.32 16 4 C -0.12 -1.97 5.21 30.59 0.16 -1.81 16 5 C -0.11 -1.63 5.21 30.59 0.16 -1.47 16 6 C -0.10 -2.30 4.50 30.59 0.14 -2.16 16 7 C -0.12 -2.45 5.70 29.85 0.17 -2.28 16 8 C 0.49 16.38 7.66 87.66 0.67 17.05 16 9 O -0.58 -26.50 13.40 -3.01 -0.04 -26.54 16 10 N -0.65 -21.16 5.30 -303.13 -1.61 -22.77 16 11 C 0.02 0.89 6.31 38.56 0.24 1.13 16 12 C -0.11 -5.86 8.61 22.13 0.19 -5.67 16 13 C -0.17 -9.74 8.61 22.48 0.19 -9.54 16 14 C 0.06 3.53 5.55 -21.28 -0.12 3.41 16 15 C -0.50 -27.73 9.02 23.39 0.21 -27.52 16 16 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 17 C 0.02 1.09 5.42 85.24 0.46 1.55 16 18 N -0.85 -48.33 10.61 21.82 0.23 -48.10 16 19 Si 0.99 40.48 29.56 68.60 2.03 42.51 16 20 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 21 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 23 C -0.21 -10.11 9.74 22.48 0.22 -9.89 16 24 C -0.11 -4.59 9.90 22.13 0.22 -4.37 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 37 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 38 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.42 9.44 8.82 -92.71 -0.82 8.62 16 41 H 0.10 5.15 6.22 -2.91 -0.02 5.13 16 42 H 0.10 6.36 6.15 -2.91 -0.02 6.35 16 43 H 0.28 14.66 8.30 -92.70 -0.77 13.89 16 44 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 45 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -71.99 368.21 4.72 -67.27 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.14 Total: 33.00 kcal Atomic # 6 Polarization: -49.33 SS G_CDS: 3.97 Total: -45.36 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -1.38 Total: -70.87 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.04 Total: -26.54 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -71.99 4.72 -67.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.780 kcal (2) G-P(sol) polarization free energy of solvation -71.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds