Wall clock time and date at job start Tue Mar 31 2020 06:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99695 * 2 1 4 4 C 1.50700 * 109.47274 * 270.00372 * 3 2 1 5 5 H 1.07994 * 119.99791 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99614 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00428 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99588 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46961 * 60.00066 * 8 6 4 10 10 H 1.48500 * 109.46857 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46938 * 300.00469 * 8 6 4 12 12 C 1.34769 * 120.00288 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00131 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00261 * 0.02562 * 12 2 1 15 15 C 1.52997 * 109.47569 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47298 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47056 * 59.99877 * 16 15 14 18 18 C 1.53002 * 109.46947 * 299.99602 * 16 15 14 19 19 C 1.50706 * 109.46962 * 180.02562 * 16 15 14 20 20 C 1.38237 * 119.99761 * 180.02562 * 19 16 15 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 16 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00191 * 359.97438 * 19 16 15 25 25 H 1.09009 * 109.46845 * 269.99499 * 1 2 3 26 26 H 1.09003 * 109.47475 * 29.99646 * 1 2 3 27 27 H 1.09003 * 109.46832 * 149.99972 * 1 2 3 28 28 H 1.09005 * 109.46879 * 30.00257 * 3 2 1 29 29 H 1.08998 * 109.46993 * 150.00214 * 3 2 1 30 30 H 0.96995 * 120.00264 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47408 * 59.99245 * 14 12 2 32 32 H 1.09007 * 109.46599 * 299.99466 * 14 12 2 33 33 H 1.09006 * 109.47201 * 59.99519 * 15 14 12 34 34 H 1.08999 * 109.46901 * 299.99678 * 15 14 12 35 35 H 1.09007 * 109.46732 * 179.97438 * 17 16 15 36 36 H 1.08992 * 109.46964 * 299.99962 * 17 16 15 37 37 H 1.08999 * 109.47201 * 60.00009 * 17 16 15 38 38 H 1.08993 * 109.47368 * 299.99744 * 18 16 15 39 39 H 1.09002 * 109.46902 * 60.00789 * 18 16 15 40 40 H 1.09004 * 109.47125 * 179.97438 * 18 16 15 41 41 H 1.08005 * 120.00088 * 359.96779 * 20 19 16 42 42 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07999 * 119.99990 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0964 -2.2416 6 6 3.1258 2.8782 -1.6726 7 7 3.5531 3.6183 -0.6730 8 14 3.4376 3.4172 -3.4338 9 1 2.1403 3.5939 -4.1345 10 1 4.1800 4.7034 -3.4337 11 1 4.2410 2.3825 -4.1332 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 6 2.3798 -3.6351 -0.0027 16 6 1.6148 -4.9602 -0.0033 17 6 0.7348 -5.0405 -1.2522 18 6 0.7357 -5.0420 1.2463 19 6 2.5943 -6.1056 -0.0037 20 6 2.1335 -7.4089 -0.0047 21 6 3.0319 -8.4595 -0.0056 22 6 4.3909 -8.2069 -0.0065 23 6 4.8517 -6.9036 -0.0006 24 6 3.9533 -5.8529 -0.0040 25 1 -0.3633 -0.0001 1.0278 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6083 2.0284 0.5139 29 1 3.1499 1.1385 0.5138 30 1 4.0292 4.4446 -0.8502 31 1 0.7591 -2.5294 -0.8918 32 1 0.7586 -2.5306 0.8881 33 1 3.0065 -3.5781 0.8873 34 1 3.0064 -3.5766 -0.8927 35 1 0.1902 -5.9847 -1.2528 36 1 0.0265 -4.2121 -1.2514 37 1 1.3611 -4.9821 -2.1424 38 1 1.3627 -4.9848 2.1360 39 1 0.0273 -4.2136 1.2470 40 1 0.1904 -5.9858 1.2457 41 1 1.0717 -7.6063 -0.0047 42 1 2.6719 -9.4778 -0.0060 43 1 5.0928 -9.0278 -0.0077 44 1 5.9135 -6.7061 0.0031 45 1 4.3133 -4.8347 -0.0036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132914087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:26 Heat of formation + Delta-G solvation = -28.650889 kcal Electronic energy + Delta-G solvation = -22927.737745 eV Core-core repulsion = 19716.483962 eV Total energy + Delta-G solvation = -3211.253783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10135 -38.85158 -36.67444 -34.74041 -32.63035 -31.46997 -30.88841 -29.37965 -27.75936 -27.36029 -25.91275 -24.96114 -23.02390 -22.44269 -21.60420 -18.95417 -18.30548 -17.11034 -16.52114 -16.19201 -15.33668 -15.22593 -15.04084 -14.86103 -14.33040 -14.14656 -13.79861 -13.62889 -13.41466 -13.35045 -12.51569 -12.46222 -12.29338 -12.20827 -12.09389 -11.82586 -11.74322 -11.44496 -11.39221 -11.18806 -11.12903 -10.89541 -10.60160 -10.52663 -10.44843 -10.36702 -10.13304 -9.61831 -8.96096 -8.81255 -8.74048 -8.41564 -7.59465 -6.02330 -4.07151 1.31190 1.35610 3.32739 3.37164 3.39564 3.51999 3.73598 4.01278 4.45593 4.52053 4.65434 4.92480 4.97120 4.99381 5.05607 5.16365 5.30818 5.37168 5.39035 5.39581 5.47121 5.55694 5.58547 5.63883 5.76742 5.81409 5.87400 5.92791 5.95130 5.99145 6.06198 6.08073 6.13690 6.23519 6.39414 6.41055 6.46137 6.49715 6.65010 6.96399 7.09836 7.47470 7.58451 7.94298 8.26171 8.48009 8.92869 9.16175 9.57964 11.05718 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.003320 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.469850 B = 8430.462471 C = 8984.468111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.605 5.605 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.502 3.498 13 O -0.544 6.544 14 C -0.142 4.142 15 C -0.093 4.093 16 C -0.027 4.027 17 C -0.141 4.141 18 C -0.140 4.140 19 C -0.064 4.064 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.119 4.119 24 C -0.118 4.118 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 -21.628 2.666 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.338 5.338 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.288 3.712 13 O -0.422 6.422 14 C -0.182 4.182 15 C -0.131 4.131 16 C -0.027 4.027 17 C -0.198 4.198 18 C -0.197 4.197 19 C -0.064 4.064 20 C -0.135 4.135 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.137 4.137 24 C -0.136 4.136 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.286 -21.418 2.716 22.486 hybrid contribution 0.122 0.413 -1.008 1.096 sum -6.164 -21.005 1.708 21.957 Atomic orbital electron populations 1.21619 0.81604 1.02478 1.00285 1.48172 1.06090 1.07972 1.71527 1.19262 0.92542 0.78249 0.97394 1.21406 1.36522 1.06221 0.92339 0.92571 1.24939 0.95379 0.96403 0.97409 1.69920 1.38421 1.14348 1.30782 0.86565 0.78355 0.77821 0.84717 1.20256 1.21167 1.20173 1.20424 0.88167 0.85237 0.77323 1.90654 1.14043 1.87355 1.50189 1.21830 0.99478 0.93384 1.03505 1.21463 0.97166 0.90800 1.03677 1.19560 0.94143 0.92826 0.96194 1.21950 0.99285 1.01719 0.96820 1.21947 0.99259 1.01742 0.96772 1.19864 0.93969 0.94061 0.98554 1.20959 0.99458 0.92164 1.00968 1.21081 0.93443 0.98740 1.00901 1.21116 0.95628 0.96755 1.01311 1.21197 0.99732 0.92774 0.99961 1.21395 0.92790 1.00039 0.99336 0.93872 0.90915 0.92474 0.95149 0.93912 0.92678 0.89377 0.89548 0.90945 0.90828 0.92715 0.91798 0.92362 0.92419 0.91810 0.92715 0.86350 0.86472 0.86509 0.86181 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.95 16 2 N -0.61 -12.97 2.86 -182.95 -0.52 -13.50 16 3 C 0.24 6.52 5.16 -5.19 -0.03 6.50 16 4 C -0.53 -15.15 9.39 -34.44 -0.32 -15.47 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 C 0.50 10.42 7.67 -10.99 -0.08 10.34 16 13 O -0.54 -13.75 15.56 5.56 0.09 -13.67 16 14 C -0.14 -2.03 3.55 -27.89 -0.10 -2.13 16 15 C -0.09 -1.28 2.22 -26.73 -0.06 -1.34 16 16 C -0.03 -0.29 0.63 -155.66 -0.10 -0.39 16 17 C -0.14 -1.38 7.94 37.16 0.29 -1.09 16 18 C -0.14 -1.33 7.93 37.16 0.29 -1.03 16 19 C -0.06 -0.73 4.76 -104.62 -0.50 -1.23 16 20 C -0.12 -1.19 8.71 -39.58 -0.34 -1.53 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 22 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 23 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 24 C -0.12 -1.44 8.98 -39.58 -0.36 -1.80 16 25 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 26 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 27 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 28 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.09 1.13 5.69 -51.93 -0.30 0.83 16 32 H 0.09 1.05 6.39 -51.92 -0.33 0.72 16 33 H 0.07 1.07 7.47 -51.93 -0.39 0.69 16 34 H 0.07 1.13 7.47 -51.93 -0.39 0.74 16 35 H 0.05 0.46 7.39 -51.92 -0.38 0.08 16 36 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 40 H 0.05 0.45 7.39 -51.93 -0.38 0.07 16 41 H 0.12 1.00 7.10 -52.48 -0.37 0.62 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.13 1.72 5.90 -52.49 -0.31 1.41 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -33.54 357.72 -8.47 -42.01 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.16 Total: -0.53 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.98 Total: -10.54 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.21 Total: -39.72 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.54 -8.47 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132914087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.356 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds