Wall clock time and date at job start Tue Mar 31 2020 06:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99695 * 2 1 4 4 C 1.50700 * 109.47274 * 270.00372 * 3 2 1 5 5 H 1.07994 * 119.99791 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99614 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00428 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99588 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46961 * 60.00066 * 8 6 4 10 10 H 1.48500 * 109.46857 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46938 * 300.00469 * 8 6 4 12 12 C 1.34769 * 120.00288 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00131 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00261 * 0.02562 * 12 2 1 15 15 C 1.52997 * 109.47569 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47298 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47056 * 59.99877 * 16 15 14 18 18 C 1.53002 * 109.46947 * 299.99602 * 16 15 14 19 19 C 1.50706 * 109.46962 * 180.02562 * 16 15 14 20 20 C 1.38237 * 119.99761 * 180.02562 * 19 16 15 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 16 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00191 * 359.97438 * 19 16 15 25 25 H 1.09009 * 109.46845 * 269.99499 * 1 2 3 26 26 H 1.09003 * 109.47475 * 29.99646 * 1 2 3 27 27 H 1.09003 * 109.46832 * 149.99972 * 1 2 3 28 28 H 1.09005 * 109.46879 * 30.00257 * 3 2 1 29 29 H 1.08998 * 109.46993 * 150.00214 * 3 2 1 30 30 H 0.96995 * 120.00264 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47408 * 59.99245 * 14 12 2 32 32 H 1.09007 * 109.46599 * 299.99466 * 14 12 2 33 33 H 1.09006 * 109.47201 * 59.99519 * 15 14 12 34 34 H 1.08999 * 109.46901 * 299.99678 * 15 14 12 35 35 H 1.09007 * 109.46732 * 179.97438 * 17 16 15 36 36 H 1.08992 * 109.46964 * 299.99962 * 17 16 15 37 37 H 1.08999 * 109.47201 * 60.00009 * 17 16 15 38 38 H 1.08993 * 109.47368 * 299.99744 * 18 16 15 39 39 H 1.09002 * 109.46902 * 60.00789 * 18 16 15 40 40 H 1.09004 * 109.47125 * 179.97438 * 18 16 15 41 41 H 1.08005 * 120.00088 * 359.96779 * 20 19 16 42 42 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07999 * 119.99990 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0964 -2.2416 6 6 3.1258 2.8782 -1.6726 7 7 3.5531 3.6183 -0.6730 8 14 3.4376 3.4172 -3.4338 9 1 2.1403 3.5939 -4.1345 10 1 4.1800 4.7034 -3.4337 11 1 4.2410 2.3825 -4.1332 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 6 2.3798 -3.6351 -0.0027 16 6 1.6148 -4.9602 -0.0033 17 6 0.7348 -5.0405 -1.2522 18 6 0.7357 -5.0420 1.2463 19 6 2.5943 -6.1056 -0.0037 20 6 2.1335 -7.4089 -0.0047 21 6 3.0319 -8.4595 -0.0056 22 6 4.3909 -8.2069 -0.0065 23 6 4.8517 -6.9036 -0.0006 24 6 3.9533 -5.8529 -0.0040 25 1 -0.3633 -0.0001 1.0278 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6083 2.0284 0.5139 29 1 3.1499 1.1385 0.5138 30 1 4.0292 4.4446 -0.8502 31 1 0.7591 -2.5294 -0.8918 32 1 0.7586 -2.5306 0.8881 33 1 3.0065 -3.5781 0.8873 34 1 3.0064 -3.5766 -0.8927 35 1 0.1902 -5.9847 -1.2528 36 1 0.0265 -4.2121 -1.2514 37 1 1.3611 -4.9821 -2.1424 38 1 1.3627 -4.9848 2.1360 39 1 0.0273 -4.2136 1.2470 40 1 0.1904 -5.9858 1.2457 41 1 1.0717 -7.6063 -0.0047 42 1 2.6719 -9.4778 -0.0060 43 1 5.0928 -9.0278 -0.0077 44 1 5.9135 -6.7061 0.0031 45 1 4.3133 -4.8347 -0.0036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132914087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:25 Heat of formation + Delta-G solvation = -47.601953 kcal Electronic energy + Delta-G solvation = -22928.559525 eV Core-core repulsion = 19716.483962 eV Total energy + Delta-G solvation = -3212.075563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.11895 -40.29843 -37.63098 -36.53825 -34.74357 -32.57883 -31.76664 -30.39193 -29.53794 -28.08940 -27.34327 -26.37105 -24.57284 -23.41164 -22.69198 -20.13420 -19.57651 -18.70859 -18.17422 -17.51377 -17.01598 -16.69126 -16.16213 -15.87797 -15.75424 -15.31098 -14.88588 -14.54162 -14.47616 -14.28825 -14.05604 -13.84403 -13.66441 -13.44779 -13.28351 -13.20007 -13.01147 -12.79962 -12.60737 -12.58261 -12.28128 -12.22152 -12.17498 -12.05021 -11.73965 -11.59778 -11.35875 -11.27599 -10.65769 -10.54061 -9.77099 -9.53634 -9.39738 -8.23541 -6.39016 0.51702 0.54449 1.34857 1.39654 1.46946 1.88604 2.32765 2.49092 2.93469 3.05482 3.64329 3.65052 3.98238 4.01695 4.18926 4.21404 4.32973 4.36254 4.41341 4.42687 4.47769 4.64323 4.68235 4.74537 4.77823 4.90383 4.96082 4.98473 5.03906 5.07699 5.08761 5.11615 5.21292 5.22784 5.26091 5.30837 5.41061 5.53229 5.55840 5.65905 5.68256 5.81763 5.85263 6.05455 6.18448 6.68929 6.82507 7.27475 7.52589 8.83328 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.003320 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.469850 B = 8430.462471 C = 8984.468111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.258 1.258 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.489 3.511 13 O -0.604 6.604 14 C -0.124 4.124 15 C -0.086 4.086 16 C -0.019 4.019 17 C -0.140 4.140 18 C -0.139 4.139 19 C -0.076 4.076 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.135 4.135 23 C -0.133 4.133 24 C -0.146 4.146 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.022 0.978 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.125 0.875 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.846 -23.881 1.731 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.345 5.345 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.182 1.182 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.279 3.721 13 O -0.486 6.486 14 C -0.163 4.163 15 C -0.124 4.124 16 C -0.019 4.019 17 C -0.197 4.197 18 C -0.196 4.196 19 C -0.076 4.076 20 C -0.137 4.137 21 C -0.141 4.141 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.164 4.164 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.040 0.960 29 H 0.012 0.988 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.157 0.843 44 H 0.143 0.857 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.169 -23.686 1.786 25.461 hybrid contribution 1.043 1.080 -0.658 1.639 sum -8.127 -22.605 1.128 24.048 Atomic orbital electron populations 1.21953 0.77774 1.04081 1.02634 1.48231 1.08495 1.06394 1.71355 1.18726 0.91009 0.80685 0.95945 1.21693 1.36960 1.06561 0.93074 0.92859 1.25896 0.94860 0.96418 1.02121 1.70045 1.38918 1.14799 1.33179 0.85460 0.78937 0.77341 0.79029 1.18227 1.20245 1.20415 1.21633 0.87924 0.86944 0.75648 1.90623 1.16998 1.88310 1.52636 1.21834 0.99158 0.89112 1.06199 1.21361 0.96955 0.92769 1.01357 1.19493 0.94032 0.90519 0.97836 1.21967 0.99045 1.03405 0.95298 1.21960 0.99023 1.03433 0.95191 1.20002 0.93497 0.95173 0.98929 1.21223 1.00841 0.91388 1.00237 1.21474 0.93138 1.00071 0.99439 1.21422 0.96655 0.96606 1.00579 1.21374 1.00005 0.93371 1.00395 1.21379 0.94072 0.99394 1.01512 0.91076 0.91781 0.88428 0.95961 0.98800 0.92367 0.86685 0.86175 0.93175 0.93620 0.90638 0.90566 0.93863 0.93552 0.90480 0.90705 0.83980 0.83637 0.84302 0.85713 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.27 10.24 127.77 1.31 3.58 16 2 N -0.61 -26.53 2.86 -851.11 -2.43 -28.96 16 3 C 0.26 14.37 5.16 85.63 0.44 14.81 16 4 C -0.54 -32.21 9.39 25.60 0.24 -31.97 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.35 5.46 84.66 0.46 0.81 16 7 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 8 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 9 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 C 0.49 20.73 7.67 87.66 0.67 21.40 16 13 O -0.60 -32.50 15.56 -3.03 -0.05 -32.54 16 14 C -0.12 -3.36 3.55 29.85 0.11 -3.25 16 15 C -0.09 -2.41 2.22 30.59 0.07 -2.35 16 16 C -0.02 -0.38 0.63 -52.93 -0.03 -0.41 16 17 C -0.14 -2.35 7.94 71.98 0.57 -1.78 16 18 C -0.14 -2.21 7.93 71.98 0.57 -1.64 16 19 C -0.08 -1.68 4.76 -19.86 -0.09 -1.77 16 20 C -0.12 -2.10 8.71 22.27 0.19 -1.90 16 21 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 22 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 23 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16 24 C -0.15 -3.76 8.98 22.27 0.20 -3.56 16 25 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 27 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 28 H 0.02 1.25 8.07 -2.38 -0.02 1.24 16 29 H -0.01 -0.40 7.42 -2.39 -0.02 -0.41 16 30 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.12 2.55 5.69 -2.39 -0.01 2.54 16 32 H 0.12 2.50 6.39 -2.38 -0.02 2.48 16 33 H 0.05 1.60 7.47 -2.38 -0.02 1.58 16 34 H 0.04 1.51 7.47 -2.39 -0.02 1.49 16 35 H 0.07 0.97 7.39 -2.38 -0.02 0.95 16 36 H 0.08 1.08 6.43 -2.39 -0.02 1.06 16 37 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.01 6.43 -2.39 -0.02 1.00 16 40 H 0.07 0.91 7.39 -2.38 -0.02 0.90 16 41 H 0.14 1.78 7.10 -2.91 -0.02 1.76 16 42 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.12 2.51 8.06 -2.91 -0.02 2.48 16 45 H 0.11 3.21 5.90 -2.91 -0.02 3.19 16 Total: -1.00 -78.22 357.72 6.17 -72.05 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.96 Total: 13.80 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 5.38 Total: -14.83 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.15 Total: -86.17 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.05 Total: -32.54 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -78.22 6.17 -72.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132914087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.443 kcal (2) G-P(sol) polarization free energy of solvation -78.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds