Wall clock time and date at job start Tue Mar 31 2020 06:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46910 * 120.00333 * 9 7 5 12 12 H 1.48502 * 109.47120 * 240.00671 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 H 1.09008 * 110.66691 * 303.23774 * 16 15 14 18 18 C 1.54716 * 110.74744 * 179.83017 * 16 15 14 19 19 C 1.51644 * 101.90181 * 216.31840 * 18 16 15 20 20 C 1.37751 * 132.16917 * 195.85047 * 19 18 16 21 21 C 1.38345 * 119.97373 * 179.52172 * 20 19 18 22 22 C 1.38286 * 119.76832 * 359.97438 * 21 20 19 23 23 C 1.37929 * 120.35402 * 0.13980 * 22 21 20 24 24 C 1.38879 * 107.03735 * 15.67742 * 19 18 16 25 25 O 1.36124 * 111.25169 * 0.63224 * 24 19 18 26 26 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 27 27 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 28 28 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 31 31 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 32 32 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 34 34 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 36 36 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 37 37 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 38 38 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 39 39 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 40 40 H 1.08994 * 110.93918 * 334.47111 * 18 16 15 41 41 H 1.08997 * 110.94440 * 98.16707 * 18 16 15 42 42 H 1.07992 * 120.01095 * 359.53729 * 20 19 18 43 43 H 1.08004 * 120.11596 * 180.02562 * 21 20 19 44 44 H 1.08002 * 119.82382 * 180.17149 * 22 21 20 45 45 H 1.07993 * 119.88261 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 0.4245 1.5661 -4.8530 11 1 2.4045 0.8658 -6.0650 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.4922 0.0535 4.8955 17 1 1.7965 1.0999 4.8687 18 6 1.9685 -0.6266 6.2010 19 6 0.7644 -0.4462 7.1050 20 6 0.6068 -0.5587 8.4688 21 6 -0.6297 -0.3245 9.0434 22 6 -1.7035 0.0228 8.2441 23 6 -1.5484 0.1337 6.8781 24 6 -0.3078 -0.1044 6.2912 25 8 0.0615 -0.0587 4.9818 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7218 -1.2489 33 1 1.6767 -1.7491 -1.2491 34 1 2.8618 -1.8826 -4.7335 35 1 3.1300 -0.7209 1.2495 36 1 1.6766 -1.7489 1.2494 37 1 1.8198 0.9437 2.4401 38 1 1.6586 -1.7220 3.6874 39 1 3.1116 -0.6939 3.6870 40 1 2.1770 -1.6836 6.0360 41 1 2.8418 -0.1178 6.6091 42 1 1.4482 -0.8295 9.0893 43 1 -0.7558 -0.4117 10.1125 44 1 -2.6685 0.2086 8.6920 45 1 -2.3920 0.4058 6.2612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135140105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:36 Heat of formation + Delta-G solvation = -21.953871 kcal Electronic energy + Delta-G solvation = -22506.703172 eV Core-core repulsion = 19295.739793 eV Total energy + Delta-G solvation = -3210.963379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26901 -37.97206 -37.33983 -34.55560 -32.85666 -32.12129 -30.18855 -29.81474 -27.03360 -26.31703 -26.10677 -24.27057 -22.63647 -22.19102 -21.86215 -21.48216 -17.92172 -17.64370 -16.92298 -16.26574 -16.19563 -15.58315 -15.01566 -14.70186 -14.26342 -14.15535 -13.76279 -13.62107 -13.34325 -13.24152 -13.01133 -12.62129 -12.56568 -12.07696 -11.99230 -11.94637 -11.70691 -11.50178 -10.98870 -10.97829 -10.88839 -10.84117 -10.72808 -10.47064 -10.24032 -10.08347 -9.66022 -9.11647 -8.99871 -8.80404 -8.30348 -8.28836 -8.09097 -5.94722 -3.94546 1.07013 1.19019 3.10284 3.33696 3.41495 3.45284 3.51264 4.07786 4.20687 4.49875 4.58112 4.72977 4.77436 4.84214 5.02417 5.04760 5.18525 5.29252 5.37391 5.41201 5.45513 5.58413 5.68821 5.76718 5.79229 5.90524 6.00931 6.11020 6.22129 6.24298 6.26023 6.35019 6.45771 6.53035 6.71304 6.81454 6.86958 7.09342 7.22415 7.23638 7.30354 7.39725 7.65048 7.72781 7.87531 8.05842 8.50473 9.11057 9.68205 11.17012 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.040997 B = 0.002587 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.815691 B =10821.306541 C =11167.325884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.070 3.930 14 N -0.681 5.681 15 C 0.061 3.939 16 C 0.087 3.913 17 H 0.085 0.915 18 C -0.105 4.105 19 C -0.180 4.180 20 C -0.071 4.071 21 C -0.157 4.157 22 C -0.085 4.085 23 C -0.143 4.143 24 C 0.112 3.888 25 O -0.279 6.279 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.258 0.742 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.338 0.662 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.622 3.014 25.379 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.005 4.005 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.312 5.312 15 C -0.069 4.069 16 C 0.030 3.970 17 H 0.102 0.898 18 C -0.143 4.143 19 C -0.181 4.181 20 C -0.089 4.089 21 C -0.175 4.175 22 C -0.103 4.103 23 C -0.161 4.161 24 C 0.066 3.934 25 O -0.192 6.192 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.269 2.573 25.016 25.360 hybrid contribution 0.864 0.554 -0.872 1.347 sum -2.406 3.127 24.144 24.464 Atomic orbital electron populations 1.21598 0.94903 1.00618 1.00228 1.20620 0.95958 0.94944 0.94280 1.21774 0.99607 0.96804 1.00476 1.19136 0.95860 0.95247 0.90229 1.21278 1.30574 1.11875 0.90579 0.92224 1.25025 0.95440 0.95148 0.99078 1.69976 1.37420 1.23260 1.23154 0.86606 0.78577 0.79754 0.83488 1.19765 1.21222 1.21156 1.22131 0.96208 0.98232 0.89236 1.60513 1.63724 1.06208 1.00796 1.22078 0.96936 0.99114 0.88756 1.23433 0.78599 0.99921 0.95000 0.89763 1.21822 0.96733 1.02678 0.93036 1.20818 0.96043 1.06543 0.94707 1.20293 0.97620 0.98394 0.92592 1.20994 0.92752 1.03887 0.99863 1.20871 0.99024 0.98021 0.92432 1.20318 0.95540 1.05533 0.94733 1.19745 0.94686 0.94776 0.84166 1.87046 1.23610 1.88015 1.20538 0.93743 0.92739 0.94206 0.94136 0.91672 0.94806 0.96932 0.96663 0.93246 0.95840 0.91485 0.84256 0.90027 0.93393 0.88941 0.89135 0.86019 0.85701 0.85325 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.06 37.16 0.30 -2.03 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 3 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.50 -13.91 7.65 -34.44 -0.26 -14.17 16 6 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.07 1.22 4.65 -3.82 -0.02 1.20 16 14 N -0.68 -10.00 5.70 -113.78 -0.65 -10.65 16 15 C 0.06 0.73 5.36 -3.82 -0.02 0.71 16 16 C 0.09 0.96 3.81 -25.83 -0.10 0.86 16 17 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 18 C -0.11 -0.96 6.65 -26.52 -0.18 -1.14 16 19 C -0.18 -1.92 6.27 -104.10 -0.65 -2.57 16 20 C -0.07 -0.63 10.03 -39.72 -0.40 -1.03 16 21 C -0.16 -1.29 10.07 -39.52 -0.40 -1.69 16 22 C -0.09 -0.74 10.02 -39.68 -0.40 -1.14 16 23 C -0.14 -1.54 10.06 -39.30 -0.40 -1.94 16 24 C 0.11 1.39 7.04 -38.95 -0.27 1.12 16 25 O -0.28 -3.89 10.79 -20.13 -0.22 -4.11 16 26 H 0.04 0.82 7.60 -51.93 -0.39 0.43 16 27 H 0.05 1.16 6.62 -51.93 -0.34 0.81 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 31 H 0.03 0.54 6.57 -51.93 -0.34 0.19 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.34 4.70 6.77 -39.29 -0.27 4.43 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.79 7.92 -51.93 -0.41 0.38 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -31.04 358.04 -10.01 -41.05 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.45 Total: 0.88 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -2.80 Total: -23.04 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.09 Total: -36.92 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.22 Total: -4.11 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.04 -10.01 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135140105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.100 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds