Wall clock time and date at job start Tue Mar 31 2020 06:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46910 * 120.00333 * 9 7 5 12 12 H 1.48502 * 109.47120 * 240.00671 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 H 1.09008 * 110.66691 * 303.23774 * 16 15 14 18 18 C 1.54716 * 110.74744 * 179.83017 * 16 15 14 19 19 C 1.51644 * 101.90181 * 216.31840 * 18 16 15 20 20 C 1.37751 * 132.16917 * 195.85047 * 19 18 16 21 21 C 1.38345 * 119.97373 * 179.52172 * 20 19 18 22 22 C 1.38286 * 119.76832 * 359.97438 * 21 20 19 23 23 C 1.37929 * 120.35402 * 0.13980 * 22 21 20 24 24 C 1.38879 * 107.03735 * 15.67742 * 19 18 16 25 25 O 1.36124 * 111.25169 * 0.63224 * 24 19 18 26 26 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 27 27 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 28 28 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 31 31 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 32 32 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 34 34 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 36 36 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 37 37 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 38 38 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 39 39 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 40 40 H 1.08994 * 110.93918 * 334.47111 * 18 16 15 41 41 H 1.08997 * 110.94440 * 98.16707 * 18 16 15 42 42 H 1.07992 * 120.01095 * 359.53729 * 20 19 18 43 43 H 1.08004 * 120.11596 * 180.02562 * 21 20 19 44 44 H 1.08002 * 119.82382 * 180.17149 * 22 21 20 45 45 H 1.07993 * 119.88261 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 0.4245 1.5661 -4.8530 11 1 2.4045 0.8658 -6.0650 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.4922 0.0535 4.8955 17 1 1.7965 1.0999 4.8687 18 6 1.9685 -0.6266 6.2010 19 6 0.7644 -0.4462 7.1050 20 6 0.6068 -0.5587 8.4688 21 6 -0.6297 -0.3245 9.0434 22 6 -1.7035 0.0228 8.2441 23 6 -1.5484 0.1337 6.8781 24 6 -0.3078 -0.1044 6.2912 25 8 0.0615 -0.0587 4.9818 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7218 -1.2489 33 1 1.6767 -1.7491 -1.2491 34 1 2.8618 -1.8826 -4.7335 35 1 3.1300 -0.7209 1.2495 36 1 1.6766 -1.7489 1.2494 37 1 1.8198 0.9437 2.4401 38 1 1.6586 -1.7220 3.6874 39 1 3.1116 -0.6939 3.6870 40 1 2.1770 -1.6836 6.0360 41 1 2.8418 -0.1178 6.6091 42 1 1.4482 -0.8295 9.0893 43 1 -0.7558 -0.4117 10.1125 44 1 -2.6685 0.2086 8.6920 45 1 -2.3920 0.4058 6.2612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135140105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:36 Heat of formation + Delta-G solvation = -39.650414 kcal Electronic energy + Delta-G solvation = -22507.470552 eV Core-core repulsion = 19295.739793 eV Total energy + Delta-G solvation = -3211.730759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.05483 -39.26296 -38.33874 -35.92706 -34.34028 -33.45825 -30.91714 -30.79655 -28.95234 -27.90197 -27.33349 -25.75141 -23.92145 -23.35072 -22.64070 -22.32179 -19.54437 -18.46063 -18.33166 -17.70454 -17.18588 -16.54773 -16.49797 -16.01357 -15.55051 -15.25455 -15.05307 -14.70927 -14.44103 -14.22845 -14.05034 -13.96989 -13.85760 -13.63353 -13.28349 -13.04391 -12.80480 -12.69146 -12.60728 -12.42940 -12.37817 -12.24970 -12.13935 -11.87490 -11.72895 -11.64328 -11.38765 -10.86689 -10.72780 -10.51275 -9.81141 -9.29364 -9.04150 -8.14362 -6.21069 0.37329 0.46111 1.39654 1.40767 1.53029 2.32290 2.43450 2.79992 3.10928 3.19519 3.46529 3.77142 3.89739 4.01480 4.12855 4.16042 4.22656 4.26331 4.37106 4.38775 4.50662 4.58486 4.64179 4.70238 4.76912 4.80447 4.88511 4.95074 4.97132 5.07583 5.16262 5.20549 5.21409 5.43555 5.50642 5.51263 5.53720 5.57513 5.58622 5.64701 5.77911 5.86578 5.92545 6.04521 6.32450 6.37071 6.52141 6.94005 7.46096 8.98172 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.040997 B = 0.002587 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.815691 B =10821.306541 C =11167.325884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.065 0.935 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.084 3.916 14 N -0.685 5.685 15 C 0.063 3.937 16 C 0.086 3.914 17 H 0.093 0.907 18 C -0.098 4.098 19 C -0.190 4.190 20 C -0.076 4.076 21 C -0.153 4.153 22 C -0.088 4.088 23 C -0.162 4.162 24 C 0.076 3.924 25 O -0.311 6.311 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.027 0.973 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.066 0.934 32 H -0.013 1.013 33 H -0.017 1.017 34 H 0.260 0.740 35 H 0.025 0.975 36 H 0.053 0.947 37 H 0.345 0.655 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 4.262 27.610 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.055 4.055 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.083 0.917 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.209 1.209 13 C -0.045 4.045 14 N -0.318 5.318 15 C -0.066 4.066 16 C 0.030 3.970 17 H 0.110 0.890 18 C -0.135 4.135 19 C -0.191 4.191 20 C -0.094 4.094 21 C -0.171 4.171 22 C -0.105 4.105 23 C -0.180 4.180 24 C 0.031 3.969 25 O -0.226 6.226 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.006 0.994 33 H 0.001 0.999 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.165 0.835 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.132 0.868 42 H 0.164 0.836 43 H 0.172 0.828 44 H 0.172 0.828 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.398 3.835 27.271 27.748 hybrid contribution 0.869 0.135 -1.461 1.706 sum -2.529 3.970 25.810 26.235 Atomic orbital electron populations 1.21493 0.94699 0.99858 1.00305 1.20484 0.95988 0.95770 0.93254 1.21680 0.99646 0.95460 1.01136 1.19019 0.94131 0.94047 0.92664 1.21639 1.30070 1.11870 0.91454 0.91704 1.25926 0.95753 0.95951 1.02583 1.70112 1.38910 1.24930 1.23967 0.85519 0.78136 0.78783 0.79364 1.18553 1.20685 1.20894 1.21810 0.96101 0.97349 0.89277 1.60404 1.64079 1.06560 1.00718 1.22109 0.98164 0.98423 0.87883 1.23489 0.77799 1.00409 0.95326 0.88968 1.21820 0.97023 1.02995 0.91680 1.21082 0.95979 1.06593 0.95464 1.20672 0.98856 0.97717 0.92181 1.21423 0.92194 1.02179 1.01333 1.21221 1.00532 0.97199 0.91585 1.20578 0.95282 1.06266 0.95923 1.20079 0.95967 0.96907 0.83990 1.86980 1.25026 1.88686 1.21881 0.91824 0.94260 0.95410 0.94028 0.93505 0.91563 0.99422 0.99863 0.93165 0.95639 0.92807 0.83483 0.91084 0.91251 0.88555 0.86757 0.83567 0.82784 0.82817 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.27 8.06 71.98 0.58 -3.69 16 2 C -0.05 -2.21 0.60 -52.18 -0.03 -2.24 16 3 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.51 -28.72 7.65 25.60 0.20 -28.53 16 6 H 0.06 3.51 5.68 -2.91 -0.02 3.49 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 9 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C 0.08 2.89 4.65 86.30 0.40 3.29 16 14 N -0.68 -19.39 5.70 -513.88 -2.93 -22.32 16 15 C 0.06 1.44 5.36 86.30 0.46 1.90 16 16 C 0.09 1.80 3.81 31.18 0.12 1.92 16 17 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 18 C -0.10 -1.60 6.65 30.73 0.20 -1.40 16 19 C -0.19 -3.76 6.27 -19.52 -0.12 -3.88 16 20 C -0.08 -1.17 10.03 22.18 0.22 -0.95 16 21 C -0.15 -2.09 10.07 22.31 0.22 -1.86 16 22 C -0.09 -1.36 10.02 22.21 0.22 -1.14 16 23 C -0.16 -3.45 10.06 22.45 0.23 -3.22 16 24 C 0.08 1.86 7.04 22.68 0.16 2.02 16 25 O -0.31 -8.68 10.79 -94.96 -1.02 -9.71 16 26 H 0.06 2.30 7.60 -2.39 -0.02 2.28 16 27 H 0.04 1.66 6.62 -2.39 -0.02 1.65 16 28 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 31 H 0.07 1.97 6.57 -2.39 -0.02 1.95 16 32 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 33 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.35 8.91 6.77 -89.69 -0.61 8.30 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.10 1.48 7.92 -2.39 -0.02 1.46 16 41 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 45 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -68.69 358.04 2.73 -65.96 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.35 Total: 15.86 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 4.01 Total: -39.32 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -2.64 Total: -79.82 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.02 Total: -9.71 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -68.69 2.73 -65.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135140105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.313 kcal (2) G-P(sol) polarization free energy of solvation -68.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds