Wall clock time and date at job start Tue Mar 31 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.53004 * 109.47448 * 120.00519 * 2 1 3 5 5 C 1.50695 * 109.46637 * 300.00013 * 4 2 1 6 6 H 1.08004 * 120.00546 * 0.27598 * 5 4 2 7 7 C 1.37885 * 119.99721 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 C 1.53005 * 109.47120 * 240.00548 * 2 1 3 14 14 N 1.46895 * 109.47071 * 59.99420 * 13 2 1 15 15 C 1.46907 * 110.99969 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.47021 * 180.02562 * 15 14 13 17 17 H 1.08991 * 110.66832 * 61.76220 * 16 15 14 18 18 C 1.54710 * 110.74573 * 185.18649 * 16 15 14 19 19 C 1.51646 * 101.92805 * 143.60472 * 18 16 15 20 20 C 1.37742 * 132.17478 * 164.14831 * 19 18 16 21 21 C 1.38343 * 119.98101 * 180.94489 * 20 19 18 22 22 C 1.38292 * 119.76852 * 0.03288 * 21 20 19 23 23 C 1.37935 * 120.34655 * 359.77733 * 22 21 20 24 24 C 1.38877 * 107.04155 * 344.63385 * 19 18 16 25 25 O 1.36144 * 111.23271 * 358.89634 * 24 19 18 26 26 H 1.08996 * 109.47130 * 299.99332 * 1 2 3 27 27 H 1.08998 * 109.47697 * 59.99746 * 1 2 3 28 28 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47603 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47444 * 300.00414 * 3 2 1 31 31 H 1.09005 * 109.46648 * 60.00043 * 3 2 1 32 32 H 1.08992 * 109.47421 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.46955 * 59.99513 * 4 2 1 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47464 * 180.02562 * 13 2 1 36 36 H 1.09004 * 109.46840 * 299.99516 * 13 2 1 37 37 H 1.00893 * 111.00486 * 303.95765 * 14 13 2 38 38 H 1.09004 * 109.47143 * 300.00653 * 15 14 13 39 39 H 1.09003 * 109.46987 * 60.00444 * 15 14 13 40 40 H 1.09004 * 110.93504 * 261.75917 * 18 16 15 41 41 H 1.08992 * 110.94090 * 25.44078 * 18 16 15 42 42 H 1.08005 * 120.00839 * 0.98610 * 20 19 18 43 43 H 1.08000 * 120.11687 * 180.02562 * 21 20 19 44 44 H 1.07993 * 119.82730 * 179.80023 * 22 21 20 45 45 H 1.07991 * 119.87915 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.5377 -0.0110 2.4796 6 1 0.9131 0.8645 2.3807 7 6 1.8704 -0.4825 3.7319 8 7 1.4325 0.1377 4.8058 9 14 2.9444 -2.0012 3.9031 10 1 4.3721 -1.5953 3.9492 11 1 2.5928 -2.7174 5.1556 12 1 2.7220 -2.8983 2.7408 13 6 2.0400 -0.7212 -1.2494 14 7 1.5502 -0.0286 -2.4487 15 6 2.0207 -0.6950 -3.6704 16 6 1.4921 0.0536 -4.8955 17 1 1.8702 1.0756 -4.9146 18 6 1.8614 -0.6962 -6.1975 19 6 0.6340 -0.4576 -7.0555 20 6 0.4088 -0.5986 -8.4070 21 6 -0.8296 -0.2852 -8.9379 22 6 -1.8375 0.1697 -8.1075 23 6 -1.6154 0.3079 -6.7531 24 6 -0.3729 -0.0104 -6.2100 25 8 0.0546 0.0418 -4.9185 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9562 0.8901 32 1 3.1300 -0.7210 1.2494 33 1 1.6767 -1.7490 1.2491 34 1 1.6669 -0.1938 5.6867 35 1 3.1300 -0.7216 -1.2492 36 1 1.6767 -1.7489 -1.2494 37 1 0.5438 0.0414 -2.4401 38 1 3.1107 -0.6953 -3.6875 39 1 1.6569 -1.7224 -3.6871 40 1 2.7490 -0.2626 -6.6582 41 1 2.0032 -1.7600 -6.0075 42 1 1.1988 -0.9543 -9.0520 43 1 -1.0087 -0.3953 -9.9973 44 1 -2.8036 0.4177 -8.5214 45 1 -2.4077 0.6642 -6.1116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135140127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:39 Heat of formation + Delta-G solvation = -20.154996 kcal Electronic energy + Delta-G solvation = -22589.546530 eV Core-core repulsion = 19378.661156 eV Total energy + Delta-G solvation = -3210.885374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35985 -38.06912 -37.42575 -34.59276 -32.92124 -32.12057 -30.26661 -29.92440 -27.66745 -26.35299 -26.20300 -24.23968 -22.72550 -21.98831 -21.86585 -21.37556 -17.91550 -17.73284 -16.99497 -16.78422 -16.29925 -15.72252 -14.96621 -14.64223 -14.44219 -14.06485 -13.90588 -13.63493 -13.41062 -13.38459 -12.99774 -12.81290 -12.54920 -12.29378 -12.04891 -12.01102 -11.84711 -11.57489 -11.14872 -11.02595 -10.93425 -10.91369 -10.81954 -10.47999 -10.32947 -9.76703 -9.66923 -9.26901 -9.17369 -8.88271 -8.47940 -8.36774 -8.19753 -5.98106 -3.94053 1.01195 1.12130 3.01237 3.33249 3.40814 3.44230 3.45348 4.02991 4.15945 4.49812 4.51262 4.68530 4.78995 4.85200 4.91522 4.99880 5.13227 5.30002 5.31914 5.34877 5.40621 5.54375 5.62791 5.66712 5.71197 5.84683 5.90617 6.04739 6.15768 6.16172 6.20213 6.26543 6.37928 6.44847 6.63261 6.71877 6.82547 6.98783 7.09759 7.14842 7.20615 7.28693 7.35545 7.48172 7.63695 7.87402 8.62076 9.08117 9.64985 11.15047 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.037617 B = 0.002720 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.163727 B =10290.786204 C =10612.165085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C -0.118 4.118 4 C -0.005 4.005 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.684 5.684 15 C 0.063 3.937 16 C 0.085 3.915 17 H 0.096 0.904 18 C -0.105 4.105 19 C -0.177 4.177 20 C -0.071 4.071 21 C -0.154 4.154 22 C -0.086 4.086 23 C -0.141 4.141 24 C 0.113 3.887 25 O -0.298 6.298 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.010 0.990 33 H 0.012 0.988 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.348 0.652 38 H 0.090 0.910 39 H 0.036 0.964 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 -1.621 -27.790 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 C -0.175 4.175 4 C -0.043 4.043 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.062 4.062 14 N -0.317 5.317 15 C -0.067 4.067 16 C 0.029 3.971 17 H 0.114 0.886 18 C -0.143 4.143 19 C -0.178 4.178 20 C -0.089 4.089 21 C -0.172 4.172 22 C -0.104 4.104 23 C -0.160 4.160 24 C 0.067 3.933 25 O -0.212 6.212 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.168 0.832 38 H 0.108 0.892 39 H 0.054 0.946 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.179 -1.159 -27.361 27.411 hybrid contribution 0.205 -1.730 0.195 1.753 sum -0.974 -2.890 -27.166 27.337 Atomic orbital electron populations 1.21783 0.95538 1.00494 1.01034 1.20414 0.95160 0.96156 0.93146 1.21618 0.99614 0.95527 1.00768 1.19634 0.95650 0.95618 0.93350 1.21142 1.31356 1.13228 0.88666 0.90401 1.25026 0.95884 0.96717 0.96039 1.69913 1.46237 1.40593 0.97809 0.86840 0.81176 0.84160 0.77440 1.20456 1.21595 1.19207 1.22153 0.99689 0.94763 0.89565 1.60542 1.17461 1.53015 1.00650 1.22080 1.00507 0.95246 0.88855 1.23534 0.77999 1.00673 0.94886 0.88608 1.21836 0.96678 1.02177 0.93613 1.20818 0.96657 1.05494 0.94809 1.20306 0.97289 0.98463 0.92893 1.21016 0.93229 1.03050 0.99944 1.20881 0.99265 0.97945 0.92300 1.20326 0.95478 1.04928 0.95258 1.19636 0.94730 0.95007 0.83907 1.86875 1.22921 1.88981 1.22396 0.91144 0.94454 0.94172 0.94236 0.93649 0.92104 0.97142 0.96957 0.92912 0.91536 0.95828 0.83163 0.89204 0.94611 0.88924 0.89101 0.85931 0.85619 0.85243 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 7.89 37.16 0.29 -2.20 16 2 C -0.05 -0.95 0.60 -154.51 -0.09 -1.04 16 3 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 4 C 0.00 -0.11 3.11 -27.88 -0.09 -0.20 16 5 C -0.51 -14.07 8.20 -34.44 -0.28 -14.35 16 6 H 0.08 2.31 5.92 -52.48 -0.31 2.00 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.95 13.96 55.43 0.77 -27.18 16 9 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 13 C 0.07 1.10 4.65 -3.82 -0.02 1.08 16 14 N -0.68 -9.78 5.71 -113.77 -0.65 -10.43 16 15 C 0.06 0.72 5.42 -3.82 -0.02 0.70 16 16 C 0.09 0.91 3.89 -25.83 -0.10 0.81 16 17 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 18 C -0.11 -0.92 6.65 -26.52 -0.18 -1.10 16 19 C -0.18 -1.80 6.27 -104.10 -0.65 -2.45 16 20 C -0.07 -0.61 10.03 -39.72 -0.40 -1.01 16 21 C -0.15 -1.21 10.07 -39.52 -0.40 -1.61 16 22 C -0.09 -0.71 10.02 -39.67 -0.40 -1.11 16 23 C -0.14 -1.44 10.06 -39.30 -0.40 -1.84 16 24 C 0.11 1.33 7.04 -38.96 -0.27 1.05 16 25 O -0.30 -3.85 10.27 -20.20 -0.21 -4.06 16 26 H 0.07 1.50 6.61 -51.93 -0.34 1.15 16 27 H 0.04 0.62 6.57 -51.93 -0.34 0.28 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.80 7.60 -51.93 -0.39 0.40 16 31 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 32 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 33 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.35 5.19 6.28 -39.30 -0.25 4.94 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.42 8.11 -51.93 -0.42 0.00 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.74 7.90 -51.93 -0.41 0.33 16 42 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 43 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 353.51 15.07 5.33 5.33 Total: -1.00 -30.99 353.51 -9.62 -40.61 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.40 Total: 1.99 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -2.80 Total: -23.49 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.12 Total: -37.61 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.21 Total: -4.06 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.99 -9.62 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135140127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.454 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds