Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.53004 * 109.47448 * 120.00519 * 2 1 3 5 5 C 1.50695 * 109.46637 * 300.00013 * 4 2 1 6 6 H 1.08004 * 120.00546 * 0.27598 * 5 4 2 7 7 C 1.37885 * 119.99721 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 C 1.53005 * 109.47120 * 240.00548 * 2 1 3 14 14 N 1.46895 * 109.47071 * 59.99420 * 13 2 1 15 15 C 1.46907 * 110.99969 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.47021 * 180.02562 * 15 14 13 17 17 H 1.08991 * 110.66832 * 61.76220 * 16 15 14 18 18 C 1.54710 * 110.74573 * 185.18649 * 16 15 14 19 19 C 1.51646 * 101.92805 * 143.60472 * 18 16 15 20 20 C 1.37742 * 132.17478 * 164.14831 * 19 18 16 21 21 C 1.38343 * 119.98101 * 180.94489 * 20 19 18 22 22 C 1.38292 * 119.76852 * 0.03288 * 21 20 19 23 23 C 1.37935 * 120.34655 * 359.77733 * 22 21 20 24 24 C 1.38877 * 107.04155 * 344.63385 * 19 18 16 25 25 O 1.36144 * 111.23271 * 358.89634 * 24 19 18 26 26 H 1.08996 * 109.47130 * 299.99332 * 1 2 3 27 27 H 1.08998 * 109.47697 * 59.99746 * 1 2 3 28 28 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47603 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47444 * 300.00414 * 3 2 1 31 31 H 1.09005 * 109.46648 * 60.00043 * 3 2 1 32 32 H 1.08992 * 109.47421 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.46955 * 59.99513 * 4 2 1 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47464 * 180.02562 * 13 2 1 36 36 H 1.09004 * 109.46840 * 299.99516 * 13 2 1 37 37 H 1.00893 * 111.00486 * 303.95765 * 14 13 2 38 38 H 1.09004 * 109.47143 * 300.00653 * 15 14 13 39 39 H 1.09003 * 109.46987 * 60.00444 * 15 14 13 40 40 H 1.09004 * 110.93504 * 261.75917 * 18 16 15 41 41 H 1.08992 * 110.94090 * 25.44078 * 18 16 15 42 42 H 1.08005 * 120.00839 * 0.98610 * 20 19 18 43 43 H 1.08000 * 120.11687 * 180.02562 * 21 20 19 44 44 H 1.07993 * 119.82730 * 179.80023 * 22 21 20 45 45 H 1.07991 * 119.87915 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.5377 -0.0110 2.4796 6 1 0.9131 0.8645 2.3807 7 6 1.8704 -0.4825 3.7319 8 7 1.4325 0.1377 4.8058 9 14 2.9444 -2.0012 3.9031 10 1 4.3721 -1.5953 3.9492 11 1 2.5928 -2.7174 5.1556 12 1 2.7220 -2.8983 2.7408 13 6 2.0400 -0.7212 -1.2494 14 7 1.5502 -0.0286 -2.4487 15 6 2.0207 -0.6950 -3.6704 16 6 1.4921 0.0536 -4.8955 17 1 1.8702 1.0756 -4.9146 18 6 1.8614 -0.6962 -6.1975 19 6 0.6340 -0.4576 -7.0555 20 6 0.4088 -0.5986 -8.4070 21 6 -0.8296 -0.2852 -8.9379 22 6 -1.8375 0.1697 -8.1075 23 6 -1.6154 0.3079 -6.7531 24 6 -0.3729 -0.0104 -6.2100 25 8 0.0546 0.0418 -4.9185 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9562 0.8901 32 1 3.1300 -0.7210 1.2494 33 1 1.6767 -1.7490 1.2491 34 1 1.6669 -0.1938 5.6867 35 1 3.1300 -0.7216 -1.2492 36 1 1.6767 -1.7489 -1.2494 37 1 0.5438 0.0414 -2.4401 38 1 3.1107 -0.6953 -3.6875 39 1 1.6569 -1.7224 -3.6871 40 1 2.7490 -0.2626 -6.6582 41 1 2.0032 -1.7600 -6.0075 42 1 1.1988 -0.9543 -9.0520 43 1 -1.0087 -0.3953 -9.9973 44 1 -2.8036 0.4177 -8.5214 45 1 -2.4077 0.6642 -6.1116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135140127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -38.294242 kcal Electronic energy + Delta-G solvation = -22590.333106 eV Core-core repulsion = 19378.661156 eV Total energy + Delta-G solvation = -3211.671951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.09953 -39.30295 -38.37776 -35.88225 -34.34177 -33.51879 -30.96436 -30.89218 -29.50170 -27.94428 -27.32190 -25.57853 -23.61568 -23.41253 -22.64890 -22.22191 -19.48664 -18.87191 -18.52053 -17.71768 -17.19523 -16.60707 -16.33437 -15.97172 -15.68134 -15.19512 -15.13446 -14.88934 -14.54203 -14.35149 -14.07681 -14.04954 -13.86159 -13.64574 -13.29752 -13.05189 -12.78286 -12.76636 -12.64099 -12.43513 -12.38118 -12.24561 -12.07734 -11.81393 -11.69751 -11.64184 -11.37050 -10.99401 -10.81723 -10.70052 -9.82949 -9.33400 -9.08572 -8.21646 -6.22087 0.35426 0.43405 1.35933 1.37549 1.48733 2.27273 2.39649 2.78380 3.10844 3.13187 3.45773 3.75201 3.96861 4.03288 4.03914 4.17166 4.19456 4.23174 4.31970 4.35804 4.52642 4.59390 4.65576 4.68173 4.75108 4.77569 4.89358 4.90644 4.96938 5.02322 5.07864 5.14955 5.17425 5.34942 5.41026 5.44282 5.48648 5.51407 5.56920 5.61000 5.74020 5.74101 5.80833 6.07161 6.26698 6.41249 6.45409 6.85197 7.40168 8.94688 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.037617 B = 0.002720 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.163727 B =10290.786204 C =10612.165085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.049 4.049 3 C -0.109 4.109 4 C -0.003 4.003 5 C -0.504 4.504 6 H 0.043 0.957 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.249 1.249 13 C 0.079 3.921 14 N -0.687 5.687 15 C 0.066 3.934 16 C 0.084 3.916 17 H 0.093 0.907 18 C -0.097 4.097 19 C -0.188 4.188 20 C -0.077 4.077 21 C -0.152 4.152 22 C -0.089 4.089 23 C -0.160 4.160 24 C 0.077 3.923 25 O -0.324 6.324 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.262 0.738 35 H 0.075 0.925 36 H 0.025 0.975 37 H 0.344 0.656 38 H 0.108 0.892 39 H 0.036 0.964 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 -3.143 -31.074 31.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.049 4.049 3 C -0.166 4.166 4 C -0.041 4.041 5 C -0.542 4.542 6 H 0.061 0.939 7 C -0.197 4.197 8 N -0.597 5.597 9 Si 0.768 3.232 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.173 1.173 13 C -0.050 4.050 14 N -0.319 5.319 15 C -0.064 4.064 16 C 0.028 3.972 17 H 0.111 0.889 18 C -0.135 4.135 19 C -0.189 4.189 20 C -0.095 4.095 21 C -0.170 4.170 22 C -0.107 4.107 23 C -0.179 4.179 24 C 0.032 3.968 25 O -0.239 6.239 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.163 0.837 38 H 0.126 0.874 39 H 0.054 0.946 40 H 0.132 0.868 41 H 0.116 0.884 42 H 0.165 0.835 43 H 0.172 0.828 44 H 0.172 0.828 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.069 -2.681 -30.680 30.797 hybrid contribution -0.285 -1.163 1.130 1.646 sum -0.216 -3.844 -29.550 29.800 Atomic orbital electron populations 1.21689 0.95458 1.00473 1.00539 1.20353 0.95256 0.96054 0.93248 1.21509 0.99681 0.95428 0.99983 1.19599 0.95747 0.95408 0.93335 1.21429 1.30057 1.12164 0.90536 0.93910 1.25959 0.97705 1.00292 0.95730 1.70073 1.48394 1.42817 0.98450 0.85762 0.79357 0.80221 0.77903 1.19432 1.21516 1.17267 1.21900 0.99996 0.94319 0.88770 1.60499 1.17140 1.53262 1.01000 1.22159 1.01483 0.95013 0.87698 1.23547 0.77377 1.00742 0.95512 0.88902 1.21827 0.96936 1.02417 0.92295 1.21089 0.96730 1.05557 0.95498 1.20679 0.98340 0.97937 0.92557 1.21437 0.92695 1.01502 1.01327 1.21228 1.00641 0.97274 0.91516 1.20589 0.95317 1.05571 0.96402 1.19978 0.95928 0.97002 0.83900 1.86824 1.23994 1.89539 1.23496 0.94431 0.92105 0.93918 0.93886 0.91802 0.95396 0.96635 0.96924 0.92899 0.90700 0.95649 0.83686 0.87435 0.94597 0.86797 0.88428 0.83534 0.82794 0.82827 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 7.89 71.98 0.57 -4.17 16 2 C -0.05 -1.87 0.60 -52.18 -0.03 -1.91 16 3 C -0.11 -4.20 8.06 71.98 0.58 -3.62 16 4 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 5 C -0.50 -28.73 8.20 25.60 0.21 -28.52 16 6 H 0.04 2.68 5.92 -2.91 -0.02 2.67 16 7 C 0.00 -0.08 5.47 84.66 0.46 0.38 16 8 N -0.96 -60.80 13.96 21.45 0.30 -60.50 16 9 Si 0.94 45.06 27.47 68.60 1.88 46.94 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 13 C 0.08 2.44 4.65 86.31 0.40 2.84 16 14 N -0.69 -18.38 5.71 -513.87 -2.94 -21.31 16 15 C 0.07 1.36 5.42 86.30 0.47 1.83 16 16 C 0.08 1.68 3.89 31.18 0.12 1.80 16 17 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 18 C -0.10 -1.48 6.65 30.73 0.20 -1.28 16 19 C -0.19 -3.50 6.27 -19.53 -0.12 -3.63 16 20 C -0.08 -1.11 10.03 22.18 0.22 -0.89 16 21 C -0.15 -1.95 10.07 22.31 0.22 -1.72 16 22 C -0.09 -1.30 10.02 22.21 0.22 -1.08 16 23 C -0.16 -3.21 10.06 22.45 0.23 -2.98 16 24 C 0.08 1.77 7.04 22.67 0.16 1.93 16 25 O -0.32 -8.26 10.27 -95.19 -0.98 -9.24 16 26 H 0.04 1.65 6.61 -2.39 -0.02 1.64 16 27 H 0.06 2.01 6.57 -2.39 -0.02 1.99 16 28 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 2.20 7.60 -2.39 -0.02 2.18 16 31 H 0.03 1.23 6.62 -2.38 -0.02 1.21 16 32 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 33 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 34 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.34 9.79 6.28 -89.70 -0.56 9.23 16 38 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.04 0.76 8.11 -2.39 -0.02 0.74 16 40 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 1.34 7.90 -2.39 -0.02 1.33 16 42 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 44 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.13 2.39 8.06 -2.92 -0.02 2.37 16 Total: -1.00 -68.74 353.51 2.63 -66.11 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.35 Total: 19.08 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 4.01 Total: -41.07 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.64 Total: -81.82 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.98 Total: -9.24 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -68.74 2.63 -66.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135140127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.819 kcal (2) G-P(sol) polarization free energy of solvation -68.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds