Wall clock time and date at job start Tue Mar 31 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38172 * 120.02837 * 2 1 4 4 C 1.38243 * 120.05737 * 179.97438 * 3 2 1 5 5 C 1.38282 * 120.10990 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.06179 * 0.02562 * 5 4 3 7 7 C 1.38712 * 120.03377 * 179.97438 * 2 1 3 8 8 O 1.35907 * 120.05190 * 359.97438 * 7 2 1 9 9 C 1.42902 * 116.99826 * 180.02562 * 8 7 2 10 10 C 1.53002 * 109.46861 * 180.02562 * 9 8 7 11 11 N 1.46492 * 109.47222 * 65.00072 * 10 9 8 12 12 C 1.36937 * 120.00371 * 270.00044 * 11 10 9 13 13 H 1.07999 * 120.00256 * 141.44791 * 12 11 10 14 14 C 1.38812 * 119.99891 * 321.44541 * 12 11 10 15 15 N 1.31624 * 119.99911 * 339.59373 * 14 12 11 16 16 Si 1.86802 * 119.99788 * 159.58752 * 14 12 11 17 17 H 1.48500 * 109.47292 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46520 * 120.00453 * 16 14 12 19 19 H 1.48502 * 109.46934 * 239.99980 * 16 14 12 20 20 C 1.46508 * 119.99793 * 89.99996 * 11 10 9 21 21 C 1.54264 * 110.03021 * 242.53521 * 20 11 10 22 22 C 1.54964 * 104.16007 * 217.13608 * 21 20 11 23 23 C 1.54893 * 102.77718 * 37.88652 * 22 21 20 24 24 C 1.53866 * 110.02969 * 125.31785 * 20 11 10 25 25 H 1.09006 * 109.47008 * 270.01707 * 1 2 3 26 26 H 1.09000 * 109.47417 * 30.01793 * 1 2 3 27 27 H 1.09000 * 109.46981 * 150.02093 * 1 2 3 28 28 H 1.08003 * 119.96865 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.93811 * 180.02562 * 4 3 2 30 30 H 1.08009 * 119.96955 * 180.27339 * 5 4 3 31 31 H 1.07993 * 120.02843 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47198 * 300.00622 * 9 8 7 33 33 H 1.09006 * 109.46802 * 60.00764 * 9 8 7 34 34 H 1.09002 * 109.46629 * 185.00323 * 10 9 8 35 35 H 1.09002 * 109.47020 * 304.99850 * 10 9 8 36 36 H 0.96997 * 119.99663 * 175.03114 * 15 14 12 37 37 H 1.09001 * 110.01489 * 3.92561 * 20 11 10 38 38 H 1.08997 * 110.48610 * 335.78020 * 21 20 11 39 39 H 1.09003 * 110.48956 * 98.42655 * 21 20 11 40 40 H 1.09004 * 110.72131 * 279.57846 * 22 21 20 41 41 H 1.09001 * 110.92678 * 156.29297 * 22 21 20 42 42 H 1.09004 * 110.48846 * 203.40498 * 23 22 21 43 43 H 1.08999 * 110.59891 * 80.81905 * 23 22 21 44 44 H 1.09003 * 110.03064 * 238.56474 * 24 20 11 45 45 H 1.08998 * 110.04016 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 0.0005 5 6 4.2751 0.0011 0.0005 6 6 3.5887 -1.1975 -0.0005 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3789 0.0016 9 6 2.3035 -3.5762 0.0027 10 6 1.3733 -4.7909 0.0031 11 7 0.6135 -4.8246 -1.2489 12 6 -0.5952 -4.1865 -1.3337 13 1 -0.8682 -3.6650 -2.2392 14 6 -1.4696 -4.2101 -0.2559 15 7 -1.3494 -5.1391 0.6688 16 14 -2.8168 -2.9235 -0.1178 17 1 -2.7387 -1.9986 -1.2771 18 1 -4.1420 -3.5936 -0.1081 19 1 -2.6409 -2.1559 1.1412 20 6 1.1467 -5.5409 -2.4103 21 6 1.3917 -4.5558 -3.5720 22 6 1.0024 -5.3590 -4.8387 23 6 -0.2273 -6.1725 -4.3640 24 6 0.1181 -6.5686 -2.9136 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6583 2.1316 0.0004 29 1 4.1193 2.1331 0.0010 30 1 5.3552 0.0043 0.0054 31 1 4.1315 -2.1311 -0.0001 32 1 2.9325 -3.6008 -0.8872 33 1 2.9323 -3.5993 0.8928 34 1 1.9653 -5.7017 0.0935 35 1 0.6841 -4.7205 0.8446 36 1 -1.9129 -5.1136 1.4579 37 1 2.0768 -6.0431 -2.1442 38 1 0.7556 -3.6769 -3.4673 39 1 2.4417 -4.2655 -3.6111 40 1 1.8129 -6.0236 -5.1382 41 1 0.7312 -4.6903 -5.6556 42 1 -0.3583 -7.0612 -4.9814 43 1 -1.1266 -5.5570 -4.3875 44 1 0.5493 -7.5695 -2.8926 45 1 -0.7781 -6.5342 -2.2941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151126431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:49 Heat of formation + Delta-G solvation = -6.142923 kcal Electronic energy + Delta-G solvation = -24203.187680 eV Core-core repulsion = 20992.909915 eV Total energy + Delta-G solvation = -3210.277765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.66791 -37.79840 -36.81192 -34.22758 -32.44008 -31.15804 -29.75641 -28.59073 -27.80396 -26.36479 -26.31107 -24.04496 -22.17009 -21.12652 -20.44291 -19.90952 -19.00305 -17.49372 -16.39393 -15.55014 -15.35397 -15.22410 -14.91735 -14.62373 -14.24432 -14.02568 -13.37939 -13.20535 -12.80656 -12.70785 -12.60176 -12.50481 -11.97391 -11.83547 -11.65627 -11.17780 -11.05944 -11.00039 -10.71686 -10.59295 -10.52778 -10.38649 -10.37676 -10.19910 -10.16149 -10.02335 -9.73114 -9.60505 -9.44107 -8.51673 -8.36504 -7.58863 -6.52278 -5.68141 -3.29893 1.63078 1.83579 3.42016 3.50969 3.52824 3.99264 4.10052 4.56654 5.11151 5.15125 5.27090 5.32425 5.38887 5.44782 5.53277 5.57760 5.67726 5.70720 5.88593 5.94542 6.04165 6.09464 6.16510 6.16700 6.22458 6.25753 6.29690 6.32062 6.47372 6.55754 6.58664 6.64630 6.66872 6.67995 6.73803 6.78636 6.88270 6.93578 7.05805 7.18587 7.21911 7.41295 7.59614 7.92572 8.16974 8.61204 9.25789 9.89043 10.45454 11.29699 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.006500 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.075985 B = 4306.395150 C = 5338.458917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.173 4.173 5 C -0.090 4.090 6 C -0.216 4.216 7 C 0.144 3.856 8 O -0.268 6.268 9 C 0.044 3.956 10 C 0.143 3.857 11 N -0.571 5.571 12 C -0.228 4.228 13 H 0.058 0.942 14 C 0.018 3.982 15 N -0.891 5.891 16 Si 0.883 3.117 17 H -0.275 1.275 18 H -0.295 1.295 19 H -0.287 1.287 20 C 0.169 3.831 21 C -0.134 4.134 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.130 4.130 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.104 0.896 36 H 0.251 0.749 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 5.488 -2.950 10.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.122 4.122 3 C -0.105 4.105 4 C -0.192 4.192 5 C -0.108 4.108 6 C -0.235 4.235 7 C 0.096 3.904 8 O -0.179 6.179 9 C -0.034 4.034 10 C 0.015 3.985 11 N -0.290 5.290 12 C -0.358 4.358 13 H 0.075 0.925 14 C -0.181 4.181 15 N -0.534 5.534 16 Si 0.713 3.287 17 H -0.200 1.200 18 H -0.223 1.223 19 H -0.213 1.213 20 C 0.062 3.938 21 C -0.174 4.174 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.169 4.169 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.114 5.339 -2.826 10.115 hybrid contribution -0.242 0.690 0.177 0.752 sum 7.872 6.028 -2.648 10.263 Atomic orbital electron populations 1.20658 0.90672 1.03119 1.02104 1.19299 0.96538 0.90522 1.05821 1.20805 0.94025 0.96602 0.99079 1.20849 0.94171 0.97590 1.06572 1.20817 0.99130 0.92131 0.98691 1.21247 0.93438 0.99050 1.09763 1.19191 0.90309 0.87523 0.93347 1.86452 1.34336 1.11088 1.86068 1.23926 0.95605 0.85742 0.98131 1.21059 0.93606 0.89911 0.93889 1.43850 1.19156 1.58617 1.07372 1.18775 0.91723 1.24241 1.01032 0.92459 1.25011 0.96674 0.96781 0.99654 1.70033 1.41275 1.30957 1.11139 0.86553 0.81826 0.82289 0.77991 1.19996 1.22263 1.21323 1.21076 0.93993 0.90605 0.88144 1.22851 0.99433 1.00103 0.94999 1.22438 0.97729 0.98361 0.97542 1.22252 0.97858 0.98497 0.96903 1.22530 1.01820 0.97188 0.95384 0.91889 0.92455 0.89864 0.86157 0.86736 0.86671 0.85889 0.93937 0.94362 0.93492 0.87818 0.93935 0.93683 0.90754 0.93831 0.92796 0.93002 0.93498 0.91985 0.94191 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.79 36.00 0.35 -1.59 16 2 C -0.12 -2.14 5.89 -104.47 -0.62 -2.76 16 3 C -0.09 -1.29 9.70 -39.60 -0.38 -1.68 16 4 C -0.17 -2.37 10.04 -39.56 -0.40 -2.77 16 5 C -0.09 -1.27 10.04 -39.61 -0.40 -1.66 16 6 C -0.22 -3.53 9.04 -39.43 -0.36 -3.88 16 7 C 0.14 2.72 6.66 -39.22 -0.26 2.46 16 8 O -0.27 -5.73 8.66 -19.45 -0.17 -5.90 16 9 C 0.04 0.85 5.08 37.16 0.19 1.04 16 10 C 0.14 3.13 5.71 -4.05 -0.02 3.11 16 11 N -0.57 -13.17 2.36 -164.40 -0.39 -13.56 16 12 C -0.23 -5.85 7.26 -15.06 -0.11 -5.96 16 13 H 0.06 1.53 6.93 -52.49 -0.36 1.17 16 14 C 0.02 0.48 4.97 -17.43 -0.09 0.39 16 15 N -0.89 -24.74 11.47 55.49 0.64 -24.11 16 16 Si 0.88 21.52 29.18 -169.99 -4.96 16.56 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.30 -7.33 7.11 56.52 0.40 -6.92 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 C 0.17 3.41 3.42 -66.81 -0.23 3.18 16 21 C -0.13 -2.49 6.43 -25.03 -0.16 -2.65 16 22 C -0.12 -1.97 6.91 -24.70 -0.17 -2.14 16 23 C -0.12 -2.02 6.83 -25.07 -0.17 -2.19 16 24 C -0.13 -2.56 6.24 -25.62 -0.16 -2.72 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 27 H 0.08 1.74 7.10 -51.93 -0.37 1.37 16 28 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 29 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 31 H 0.12 1.86 6.30 -52.49 -0.33 1.52 16 32 H 0.04 0.79 7.66 -51.93 -0.40 0.39 16 33 H 0.04 0.66 7.66 -51.93 -0.40 0.26 16 34 H 0.05 0.95 7.90 -51.93 -0.41 0.54 16 35 H 0.10 2.64 5.55 -51.93 -0.29 2.35 16 36 H 0.25 6.84 8.32 -40.82 -0.34 6.50 16 37 H 0.04 0.86 7.81 -51.93 -0.41 0.45 16 38 H 0.07 1.56 6.64 -51.93 -0.34 1.22 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 2.04 7.17 -51.93 -0.37 1.67 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -27.56 355.31 -9.97 -37.53 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.46 Total: 3.95 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -2.98 Total: -19.82 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.25 Total: -37.66 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.17 Total: -5.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.96 Total: 16.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.56 -9.97 -37.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151126431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.383 kcal (2) G-P(sol) polarization free energy of solvation -27.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds