Wall clock time and date at job start Tue Mar 31 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38172 * 120.02837 * 2 1 4 4 C 1.38243 * 120.05737 * 179.97438 * 3 2 1 5 5 C 1.38282 * 120.10990 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.06179 * 0.02562 * 5 4 3 7 7 C 1.38712 * 120.03377 * 179.97438 * 2 1 3 8 8 O 1.35907 * 120.05190 * 359.97438 * 7 2 1 9 9 C 1.42902 * 116.99826 * 180.02562 * 8 7 2 10 10 C 1.53002 * 109.46861 * 180.02562 * 9 8 7 11 11 N 1.46492 * 109.47222 * 65.00072 * 10 9 8 12 12 C 1.36937 * 120.00371 * 270.00044 * 11 10 9 13 13 H 1.07999 * 120.00256 * 141.44791 * 12 11 10 14 14 C 1.38812 * 119.99891 * 321.44541 * 12 11 10 15 15 N 1.31624 * 119.99911 * 339.59373 * 14 12 11 16 16 Si 1.86802 * 119.99788 * 159.58752 * 14 12 11 17 17 H 1.48500 * 109.47292 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46520 * 120.00453 * 16 14 12 19 19 H 1.48502 * 109.46934 * 239.99980 * 16 14 12 20 20 C 1.46508 * 119.99793 * 89.99996 * 11 10 9 21 21 C 1.54264 * 110.03021 * 242.53521 * 20 11 10 22 22 C 1.54964 * 104.16007 * 217.13608 * 21 20 11 23 23 C 1.54893 * 102.77718 * 37.88652 * 22 21 20 24 24 C 1.53866 * 110.02969 * 125.31785 * 20 11 10 25 25 H 1.09006 * 109.47008 * 270.01707 * 1 2 3 26 26 H 1.09000 * 109.47417 * 30.01793 * 1 2 3 27 27 H 1.09000 * 109.46981 * 150.02093 * 1 2 3 28 28 H 1.08003 * 119.96865 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.93811 * 180.02562 * 4 3 2 30 30 H 1.08009 * 119.96955 * 180.27339 * 5 4 3 31 31 H 1.07993 * 120.02843 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47198 * 300.00622 * 9 8 7 33 33 H 1.09006 * 109.46802 * 60.00764 * 9 8 7 34 34 H 1.09002 * 109.46629 * 185.00323 * 10 9 8 35 35 H 1.09002 * 109.47020 * 304.99850 * 10 9 8 36 36 H 0.96997 * 119.99663 * 175.03114 * 15 14 12 37 37 H 1.09001 * 110.01489 * 3.92561 * 20 11 10 38 38 H 1.08997 * 110.48610 * 335.78020 * 21 20 11 39 39 H 1.09003 * 110.48956 * 98.42655 * 21 20 11 40 40 H 1.09004 * 110.72131 * 279.57846 * 22 21 20 41 41 H 1.09001 * 110.92678 * 156.29297 * 22 21 20 42 42 H 1.09004 * 110.48846 * 203.40498 * 23 22 21 43 43 H 1.08999 * 110.59891 * 80.81905 * 23 22 21 44 44 H 1.09003 * 110.03064 * 238.56474 * 24 20 11 45 45 H 1.08998 * 110.04016 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 0.0005 5 6 4.2751 0.0011 0.0005 6 6 3.5887 -1.1975 -0.0005 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3789 0.0016 9 6 2.3035 -3.5762 0.0027 10 6 1.3733 -4.7909 0.0031 11 7 0.6135 -4.8246 -1.2489 12 6 -0.5952 -4.1865 -1.3337 13 1 -0.8682 -3.6650 -2.2392 14 6 -1.4696 -4.2101 -0.2559 15 7 -1.3494 -5.1391 0.6688 16 14 -2.8168 -2.9235 -0.1178 17 1 -2.7387 -1.9986 -1.2771 18 1 -4.1420 -3.5936 -0.1081 19 1 -2.6409 -2.1559 1.1412 20 6 1.1467 -5.5409 -2.4103 21 6 1.3917 -4.5558 -3.5720 22 6 1.0024 -5.3590 -4.8387 23 6 -0.2273 -6.1725 -4.3640 24 6 0.1181 -6.5686 -2.9136 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6583 2.1316 0.0004 29 1 4.1193 2.1331 0.0010 30 1 5.3552 0.0043 0.0054 31 1 4.1315 -2.1311 -0.0001 32 1 2.9325 -3.6008 -0.8872 33 1 2.9323 -3.5993 0.8928 34 1 1.9653 -5.7017 0.0935 35 1 0.6841 -4.7205 0.8446 36 1 -1.9129 -5.1136 1.4579 37 1 2.0768 -6.0431 -2.1442 38 1 0.7556 -3.6769 -3.4673 39 1 2.4417 -4.2655 -3.6111 40 1 1.8129 -6.0236 -5.1382 41 1 0.7312 -4.6903 -5.6556 42 1 -0.3583 -7.0612 -4.9814 43 1 -1.1266 -5.5570 -4.3875 44 1 0.5493 -7.5695 -2.8926 45 1 -0.7781 -6.5342 -2.2941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151126431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:48 Heat of formation + Delta-G solvation = -18.400757 kcal Electronic energy + Delta-G solvation = -24203.719219 eV Core-core repulsion = 20992.909915 eV Total energy + Delta-G solvation = -3210.809304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99081 -39.37453 -38.18279 -35.94794 -33.73305 -33.04886 -31.09821 -30.09193 -29.30708 -28.09322 -27.62592 -25.76296 -23.67939 -22.40202 -21.92224 -21.32192 -20.70528 -18.84545 -18.21509 -17.09984 -16.87247 -16.58826 -16.34805 -16.21799 -15.95652 -15.27029 -14.95124 -14.78879 -14.32856 -14.15187 -14.03795 -13.92800 -13.53108 -13.22659 -13.19720 -12.84029 -12.79343 -12.67658 -12.20752 -12.15630 -12.08928 -11.94120 -11.86991 -11.75923 -11.72140 -11.53345 -11.36565 -11.21557 -11.10947 -10.38677 -9.70785 -8.89741 -8.46543 -7.69024 -5.33269 0.44103 0.62046 1.40673 1.45760 1.52642 2.55211 2.61209 2.89846 3.36267 3.62473 3.93455 3.96800 3.99862 4.05242 4.23285 4.25767 4.31709 4.43798 4.52132 4.59807 4.68510 4.68650 4.72808 4.73762 4.77648 4.78282 4.92256 4.95082 4.98056 5.00499 5.04217 5.23698 5.24442 5.34664 5.35111 5.53081 5.59403 5.60722 5.64257 5.66212 5.68805 5.73980 5.87650 6.04253 6.56928 6.80432 7.28943 7.98229 8.48220 9.23195 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.006500 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.075985 B = 4306.395150 C = 5338.458917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.148 4.148 3 C -0.086 4.086 4 C -0.164 4.164 5 C -0.087 4.087 6 C -0.223 4.223 7 C 0.107 3.893 8 O -0.305 6.305 9 C 0.056 3.944 10 C 0.141 3.859 11 N -0.582 5.582 12 C -0.207 4.207 13 H 0.041 0.959 14 C -0.025 4.025 15 N -0.917 5.917 16 Si 0.923 3.077 17 H -0.271 1.271 18 H -0.300 1.300 19 H -0.292 1.292 20 C 0.160 3.840 21 C -0.128 4.128 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.127 4.127 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.147 0.853 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.244 0.756 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.057 0.943 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.230 6.906 -4.376 13.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.149 4.149 3 C -0.103 4.103 4 C -0.182 4.182 5 C -0.104 4.104 6 C -0.241 4.241 7 C 0.061 3.939 8 O -0.217 6.217 9 C -0.021 4.021 10 C 0.014 3.986 11 N -0.302 5.302 12 C -0.338 4.338 13 H 0.059 0.941 14 C -0.221 4.221 15 N -0.563 5.563 16 Si 0.753 3.247 17 H -0.196 1.196 18 H -0.228 1.228 19 H -0.219 1.219 20 C 0.054 3.946 21 C -0.167 4.167 22 C -0.149 4.149 23 C -0.152 4.152 24 C -0.167 4.167 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.165 0.835 29 H 0.170 0.830 30 H 0.167 0.833 31 H 0.149 0.851 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.876 6.770 -4.273 13.505 hybrid contribution -0.980 0.322 0.595 1.191 sum 9.897 7.092 -3.678 12.719 Atomic orbital electron populations 1.20563 0.91687 1.02302 1.01495 1.19508 0.96279 0.91532 1.07534 1.21144 0.94960 0.96394 0.97847 1.21328 0.93750 0.99040 1.04096 1.21258 1.00908 0.91331 0.96938 1.21432 0.92390 1.00604 1.09701 1.19527 0.91670 0.86878 0.95832 1.86376 1.35874 1.12273 1.87201 1.23643 0.94681 0.84485 0.99340 1.20978 0.93396 0.92004 0.92220 1.43978 1.18654 1.58995 1.08533 1.18675 0.92309 1.22894 0.99947 0.94130 1.25404 0.98347 0.98197 1.00123 1.70128 1.42369 1.32275 1.11500 0.85909 0.80089 0.80973 0.77682 1.19576 1.22784 1.21858 1.21315 0.94558 0.91094 0.87629 1.22719 0.99621 0.98677 0.95715 1.22401 0.97669 0.98319 0.96474 1.22217 0.97771 0.99533 0.95632 1.22443 0.99729 0.98188 0.96299 0.92490 0.89963 0.93808 0.83513 0.83016 0.83264 0.85135 0.93071 0.92479 0.92048 0.91423 0.94665 0.92082 0.94042 0.92348 0.90109 0.91584 0.90783 0.93941 0.92410 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.79 9.79 71.23 0.70 -3.10 16 2 C -0.15 -5.19 5.89 -19.77 -0.12 -5.30 16 3 C -0.09 -2.31 9.70 22.26 0.22 -2.10 16 4 C -0.16 -3.81 10.04 22.28 0.22 -3.58 16 5 C -0.09 -2.13 10.04 22.25 0.22 -1.90 16 6 C -0.22 -6.89 9.04 22.37 0.20 -6.68 16 7 C 0.11 4.07 6.66 22.51 0.15 4.22 16 8 O -0.30 -13.47 8.66 -92.50 -0.80 -14.27 16 9 C 0.06 2.18 5.08 71.98 0.37 2.55 16 10 C 0.14 6.36 5.71 86.38 0.49 6.85 16 11 N -0.58 -27.62 2.36 -674.03 -1.59 -29.21 16 12 C -0.21 -11.14 7.26 84.03 0.61 -10.53 16 13 H 0.04 2.30 6.93 -2.91 -0.02 2.28 16 14 C -0.02 -1.37 4.97 84.86 0.42 -0.95 16 15 N -0.92 -53.59 11.47 21.65 0.25 -53.34 16 16 Si 0.92 46.43 29.18 68.60 2.00 48.44 16 17 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 19 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 20 C 0.16 6.40 3.42 45.71 0.16 6.56 16 21 C -0.13 -4.60 6.43 31.69 0.20 -4.39 16 22 C -0.11 -3.26 6.91 31.91 0.22 -3.04 16 23 C -0.11 -3.76 6.83 31.67 0.22 -3.54 16 24 C -0.13 -4.99 6.24 31.32 0.20 -4.79 16 25 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.08 2.46 8.09 -2.39 -0.02 2.44 16 27 H 0.04 1.92 7.10 -2.39 -0.02 1.90 16 28 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.13 3.71 6.30 -2.91 -0.02 3.69 16 32 H 0.05 1.87 7.66 -2.39 -0.02 1.85 16 33 H 0.06 1.96 7.66 -2.38 -0.02 1.94 16 34 H 0.06 2.51 7.90 -2.39 -0.02 2.49 16 35 H 0.07 3.62 5.55 -2.39 -0.01 3.60 16 36 H 0.24 14.05 8.32 -92.71 -0.77 13.28 16 37 H 0.06 2.23 7.81 -2.39 -0.02 2.21 16 38 H 0.04 1.76 6.64 -2.39 -0.02 1.74 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.04 1.98 7.17 -2.39 -0.02 1.96 16 Total: -1.00 -63.72 355.31 5.29 -58.44 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.95 Total: 19.69 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 4.48 Total: -29.74 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -1.34 Total: -82.55 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.80 Total: -14.27 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.00 Total: 48.44 kcal Total: -63.72 5.29 -58.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151126431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.037 kcal (2) G-P(sol) polarization free energy of solvation -63.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds