Wall clock time and date at job start Tue Mar 31 2020 06:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38239 * 119.99743 * 269.72597 * 5 4 2 7 7 C 1.38236 * 119.99796 * 179.76891 * 6 5 4 8 8 C 1.38242 * 119.99871 * 0.48508 * 7 6 5 9 9 C 1.50705 * 120.00026 * 179.76896 * 8 7 6 10 10 C 1.52994 * 109.46944 * 270.02533 * 9 8 7 11 11 C 1.53001 * 109.47054 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47484 * 179.97438 * 11 10 9 13 13 O 1.21296 * 119.99886 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00261 * 180.02562 * 12 11 10 15 15 C 1.37102 * 120.00088 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99995 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99892 * 179.97438 * 15 14 12 18 18 N 1.31405 * 119.99968 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99841 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46745 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47119 * 119.99920 * 19 17 15 22 22 H 1.48491 * 109.46858 * 239.99980 * 19 17 15 23 23 C 1.38230 * 119.99757 * 359.79237 * 8 7 6 24 24 C 1.38231 * 120.00640 * 359.95396 * 23 8 7 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 33 33 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 34 34 H 1.07997 * 120.00611 * 359.97438 * 6 5 4 35 35 H 1.08001 * 120.00122 * 180.25296 * 7 6 5 36 36 H 1.09002 * 109.46631 * 30.02350 * 9 8 7 37 37 H 1.08996 * 109.46819 * 150.02234 * 9 8 7 38 38 H 1.09002 * 109.47307 * 299.99402 * 10 9 8 39 39 H 1.08996 * 109.47607 * 60.00184 * 10 9 8 40 40 H 1.09006 * 109.47074 * 299.99845 * 11 10 9 41 41 H 1.09008 * 109.47105 * 59.99640 * 11 10 9 42 42 H 0.96998 * 119.99815 * 359.97438 * 14 12 11 43 43 H 0.97002 * 119.99661 * 179.97438 * 18 17 15 44 44 H 1.08007 * 119.99539 * 179.97438 * 23 8 7 45 45 H 1.08000 * 120.00464 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3291 0.1685 -1.7323 7 6 5.7068 0.0716 -1.6726 8 6 6.2973 -1.0281 -1.0783 9 6 7.7992 -1.1363 -1.0179 10 6 8.3092 -1.8574 -2.2671 11 6 9.8341 -1.9667 -2.2061 12 6 10.3365 -2.6776 -3.4363 13 8 9.5520 -3.0597 -4.2788 14 7 11.6573 -2.8896 -3.5998 15 6 12.1143 -3.5368 -4.7188 16 1 11.4159 -3.8764 -5.4693 17 6 13.4762 -3.7550 -4.8876 18 7 14.3260 -3.3414 -3.9747 19 14 14.0989 -4.6362 -6.4126 20 1 12.9487 -4.9977 -7.2796 21 1 15.0206 -3.7425 -7.1590 22 1 14.8222 -5.8693 -6.0109 23 6 5.5100 -2.0287 -0.5400 24 6 4.1324 -1.9293 -0.5949 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1369 34 1 3.8680 1.0254 -2.2006 35 1 6.3219 0.8531 -2.0936 36 1 8.2338 -0.1377 -0.9719 37 1 8.0875 -1.6992 -0.1302 38 1 7.8747 -2.8560 -2.3131 39 1 8.0210 -1.2945 -3.1548 40 1 10.2684 -0.9679 -2.1604 41 1 10.1228 -2.5295 -1.3183 42 1 12.2846 -2.5844 -2.9259 43 1 15.2767 -3.4941 -4.0924 44 1 5.9713 -2.8880 -0.0760 45 1 3.5173 -2.7109 -0.1739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151722245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:27 Heat of formation + Delta-G solvation = -76.549848 kcal Electronic energy + Delta-G solvation = -21579.404150 eV Core-core repulsion = 18366.073311 eV Total energy + Delta-G solvation = -3213.330838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60776 -40.10726 -37.49821 -36.13986 -35.31330 -33.30737 -32.29942 -31.77573 -29.24621 -27.97520 -27.17113 -25.72181 -23.56989 -23.12808 -21.53423 -20.88859 -20.77392 -19.85799 -17.75722 -17.06703 -16.82965 -16.53433 -16.16900 -16.01431 -15.77204 -15.43555 -15.17427 -14.64025 -14.54327 -14.29573 -14.19469 -13.92153 -13.51897 -13.28293 -13.08997 -12.99809 -12.94267 -12.69784 -12.51680 -12.42507 -12.33146 -12.14771 -11.99872 -11.87528 -11.65907 -11.54009 -11.50703 -11.46727 -11.41635 -10.36096 -10.03228 -9.74400 -9.30217 -8.48518 -5.97653 0.48265 0.56535 1.35294 1.40238 1.54825 2.04893 2.29184 2.85978 3.19039 3.27114 3.81470 3.90404 3.96470 4.05528 4.11466 4.21973 4.22849 4.25541 4.39988 4.43048 4.53068 4.65668 4.73747 4.75465 4.79655 4.84768 4.86833 4.89931 4.95146 4.99753 5.08261 5.09701 5.18930 5.21985 5.31613 5.36621 5.39874 5.45487 5.47590 5.49656 5.60006 5.79178 5.82549 5.99046 6.20202 6.57839 7.10642 7.55143 8.11004 8.69065 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.047278 B = 0.002139 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.103024 B =13089.156949 C =13272.343640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.150 4.150 4 C -0.073 4.073 5 C -0.091 4.091 6 C -0.120 4.120 7 C -0.129 4.129 8 C -0.095 4.095 9 C -0.072 4.072 10 C -0.081 4.081 11 C -0.119 4.119 12 C 0.433 3.567 13 O -0.641 6.641 14 N -0.574 5.574 15 C -0.338 4.338 16 H 0.077 0.923 17 C -0.014 4.014 18 N -0.919 5.919 19 Si 0.994 3.006 20 H -0.275 1.275 21 H -0.269 1.269 22 H -0.269 1.269 23 C -0.128 4.128 24 C -0.126 4.126 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.398 0.602 43 H 0.278 0.722 44 H 0.127 0.873 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.072 8.899 11.904 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.207 4.207 4 C -0.110 4.110 5 C -0.091 4.091 6 C -0.138 4.138 7 C -0.147 4.147 8 C -0.095 4.095 9 C -0.109 4.109 10 C -0.119 4.119 11 C -0.159 4.159 12 C 0.221 3.779 13 O -0.529 6.529 14 N -0.210 5.210 15 C -0.467 4.467 16 H 0.095 0.905 17 C -0.213 4.213 18 N -0.560 5.560 19 Si 0.817 3.183 20 H -0.199 1.199 21 H -0.194 1.194 22 H -0.194 1.194 23 C -0.146 4.146 24 C -0.144 4.144 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.232 0.768 43 H 0.088 0.912 44 H 0.145 0.855 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.371 8.639 11.366 26.539 hybrid contribution 1.004 -0.410 -0.556 1.218 sum -21.367 8.229 10.811 25.321 Atomic orbital electron populations 1.21832 0.94134 1.02102 1.02175 1.21053 0.96131 0.96289 0.97237 1.21907 1.00994 0.95849 1.01929 1.20691 0.89766 1.01668 0.98892 1.20076 0.96578 0.94420 0.98076 1.21210 0.93319 0.99204 1.00100 1.21272 0.95435 0.98328 0.99648 1.20043 0.96016 0.94973 0.98467 1.20596 0.90660 1.01978 0.97677 1.21099 0.92911 1.00196 0.97686 1.21518 0.97334 1.01786 0.95260 1.21217 0.82221 0.84210 0.90205 1.90481 1.56348 1.57963 1.48096 1.42026 1.06419 1.51537 1.21048 1.19728 0.92164 1.34780 1.00068 0.90540 1.26066 0.95313 0.98152 1.01795 1.69675 1.03644 1.46989 1.35704 0.84863 0.77990 0.78074 0.77341 1.19936 1.19427 1.19439 1.21258 0.94165 0.98738 1.00447 1.21232 0.94636 0.98397 1.00130 0.92316 0.92334 0.92243 0.91793 0.93212 0.92286 0.92494 0.90584 0.90644 0.84975 0.85488 0.89623 0.89644 0.93526 0.93516 0.87935 0.87951 0.76829 0.91231 0.85498 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.19 71.98 0.66 -0.83 16 2 C -0.09 -1.15 2.91 -10.79 -0.03 -1.18 16 3 C -0.15 -1.96 8.78 71.98 0.63 -1.33 16 4 C -0.07 -1.07 4.84 29.85 0.14 -0.92 16 5 C -0.09 -1.79 4.70 -19.87 -0.09 -1.88 16 6 C -0.12 -2.47 7.98 22.27 0.18 -2.30 16 7 C -0.13 -2.97 9.70 22.27 0.22 -2.75 16 8 C -0.09 -2.31 5.13 -19.86 -0.10 -2.41 16 9 C -0.07 -1.69 5.34 29.85 0.16 -1.53 16 10 C -0.08 -2.59 4.49 30.59 0.14 -2.45 16 11 C -0.12 -4.06 5.70 29.85 0.17 -3.89 16 12 C 0.43 21.27 7.78 87.66 0.68 21.95 16 13 O -0.64 -36.97 15.56 -3.08 -0.05 -37.02 16 14 N -0.57 -30.31 5.29 -306.98 -1.62 -31.93 16 15 C -0.34 -19.71 9.68 84.04 0.81 -18.89 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 18 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 19 Si 0.99 43.59 29.55 68.60 2.03 45.61 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 C -0.13 -2.97 9.70 22.27 0.22 -2.75 16 24 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.78 6.28 -2.39 -0.01 0.76 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 33 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 34 H 0.13 2.22 8.05 -2.91 -0.02 2.20 16 35 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.09 1.76 8.09 -2.39 -0.02 1.74 16 37 H 0.09 1.76 8.09 -2.39 -0.02 1.74 16 38 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 39 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 40 H 0.10 3.01 8.14 -2.38 -0.02 2.99 16 41 H 0.10 3.01 8.14 -2.38 -0.02 2.99 16 42 H 0.40 19.78 7.90 -92.71 -0.73 19.04 16 43 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -68.84 371.45 5.32 -63.52 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.22 Total: 33.61 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 4.47 Total: -23.85 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -1.34 Total: -81.87 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -0.05 Total: -37.02 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -68.84 5.32 -63.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151722245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.031 kcal (2) G-P(sol) polarization free energy of solvation -68.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds