Wall clock time and date at job start Tue Mar 31 2020 06:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47237 * 2 1 4 4 C 1.53002 * 109.46612 * 239.99822 * 2 1 3 5 5 C 1.52996 * 109.47352 * 120.00206 * 2 1 3 6 6 C 1.50702 * 109.47159 * 59.99543 * 5 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09001 * 109.46948 * 35.00281 * 9 8 6 11 11 C 1.52999 * 109.47481 * 154.99940 * 9 8 6 12 12 C 1.50698 * 109.47141 * 295.00678 * 11 9 8 13 13 H 1.07994 * 120.00042 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99710 * 179.97438 * 12 11 9 15 15 N 1.31515 * 120.00499 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47105 * 90.00059 * 16 14 12 18 18 H 1.48498 * 109.47057 * 210.00456 * 16 14 12 19 19 H 1.48503 * 109.46745 * 330.00438 * 16 14 12 20 20 C 1.50700 * 109.47514 * 275.00337 * 9 8 6 21 21 C 1.38235 * 119.99909 * 319.72923 * 20 9 8 22 22 C 1.38235 * 120.00203 * 179.78500 * 21 20 9 23 23 C 1.38243 * 119.99736 * 0.43880 * 22 21 20 24 24 C 1.38244 * 119.99802 * 359.81374 * 23 22 21 25 25 C 1.38234 * 120.00041 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.46527 * 299.99899 * 1 2 3 27 27 H 1.09001 * 109.46925 * 60.00124 * 1 2 3 28 28 H 1.09003 * 109.47167 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47184 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47062 * 299.99792 * 3 2 1 31 31 H 1.08998 * 109.46965 * 59.99861 * 3 2 1 32 32 H 1.08994 * 109.47439 * 300.00090 * 4 2 1 33 33 H 1.09001 * 109.47432 * 60.00364 * 4 2 1 34 34 H 1.09008 * 109.46768 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.47066 * 299.99746 * 5 2 1 36 36 H 1.08994 * 109.47405 * 179.97438 * 5 2 1 37 37 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 38 38 H 1.09006 * 109.46798 * 55.00299 * 11 9 8 39 39 H 1.08995 * 109.47322 * 174.99759 * 11 9 8 40 40 H 0.96993 * 120.00753 * 179.97438 * 15 14 12 41 41 H 1.08003 * 119.99755 * 359.97438 * 21 20 9 42 42 H 1.07999 * 120.00430 * 180.26737 * 22 21 20 43 43 H 1.07994 * 120.00105 * 179.82908 * 23 22 21 44 44 H 1.07997 * 119.99648 * 180.02562 * 24 23 22 45 45 H 1.07994 * 119.99956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5377 -2.1421 1.2492 7 8 0.8407 -2.5389 0.3394 8 7 1.8679 -2.9736 2.2572 9 6 1.3845 -4.3565 2.2542 10 1 1.3475 -4.7262 1.2295 11 6 2.3331 -5.2302 3.0776 12 6 3.6817 -5.2777 2.4069 13 1 3.8458 -4.7391 1.4854 14 6 4.7061 -6.0089 2.9698 15 7 4.5062 -6.6653 4.0918 16 14 6.3778 -6.0685 2.1382 17 1 7.2235 -4.9588 2.6468 18 1 7.0331 -7.3673 2.4366 19 1 6.2055 -5.9267 0.6700 20 6 0.0042 -4.4076 2.8568 21 6 -0.2952 -3.6371 3.9648 22 6 -1.5626 -3.6806 4.5149 23 6 -2.5281 -4.5013 3.9624 24 6 -2.2272 -5.2757 2.8574 25 6 -0.9610 -5.2290 2.3048 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2075 -2.1393 34 1 3.1300 -0.7209 -1.2495 35 1 1.6768 -0.2074 2.1392 36 1 3.1300 -0.7217 1.2489 37 1 2.4256 -2.6564 2.9847 38 1 2.4391 -4.8090 4.0774 39 1 1.9272 -6.2392 3.1496 40 1 5.2267 -7.1800 4.4877 41 1 0.4603 -2.9990 4.3988 42 1 -1.7978 -3.0754 5.3779 43 1 -3.5175 -4.5374 4.3937 44 1 -2.9816 -5.9166 2.4256 45 1 -0.7260 -5.8336 1.4414 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153517866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:37 Heat of formation + Delta-G solvation = -39.240299 kcal Electronic energy + Delta-G solvation = -23566.472487 eV Core-core repulsion = 20354.759512 eV Total energy + Delta-G solvation = -3211.712975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90940 -38.72359 -36.50879 -34.91299 -32.74112 -31.26422 -30.46183 -28.98937 -27.76883 -27.06901 -26.98393 -24.77139 -22.29192 -21.95518 -20.71643 -19.67008 -18.66585 -16.93143 -16.45554 -16.15540 -15.44344 -15.05950 -14.66548 -14.57579 -14.34826 -14.08216 -14.02823 -13.58148 -13.04883 -12.86425 -12.61698 -12.43450 -12.11320 -12.00162 -11.98154 -11.59415 -11.53182 -11.16030 -11.14742 -10.90206 -10.88171 -10.73046 -10.58834 -10.57089 -10.49192 -10.39538 -9.76737 -9.30522 -8.98925 -8.53576 -8.45764 -8.33645 -8.16602 -6.09704 -4.13139 1.79097 1.81109 3.18631 3.25926 3.33614 3.37522 3.80937 4.25603 4.39244 4.82483 4.97389 5.05816 5.26862 5.27020 5.28190 5.37164 5.47315 5.55027 5.61694 5.65811 5.72052 5.74633 5.91319 5.91816 5.95158 5.98524 6.01460 6.18726 6.23895 6.28051 6.35759 6.38032 6.46014 6.59668 6.68269 6.71475 6.85563 6.86269 7.02912 7.14128 7.41518 7.49540 7.64084 7.87119 8.19171 8.26360 8.86125 8.92875 9.51918 11.00834 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.006692 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.464004 B = 4183.291495 C = 6584.563105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.049 4.049 3 C -0.141 4.141 4 C -0.153 4.153 5 C -0.134 4.134 6 C 0.511 3.489 7 O -0.542 6.542 8 N -0.702 5.702 9 C 0.184 3.816 10 H 0.086 0.914 11 C 0.024 3.976 12 C -0.519 4.519 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.069 4.069 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.108 4.108 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.400 0.600 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.612 11.549 -2.449 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.050 4.050 3 C -0.199 4.199 4 C -0.210 4.210 5 C -0.174 4.174 6 C 0.298 3.702 7 O -0.422 6.422 8 N -0.351 5.351 9 C 0.080 3.920 10 H 0.104 0.896 11 C -0.014 4.014 12 C -0.557 4.557 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.071 4.071 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.127 4.127 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.234 0.766 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.002 11.131 -2.966 14.620 hybrid contribution 1.329 0.066 0.141 1.338 sum -7.673 11.197 -2.825 13.865 Atomic orbital electron populations 1.22095 0.94295 1.04288 1.00172 1.20225 0.96220 0.94107 0.94407 1.21900 1.00811 0.95691 1.01465 1.22106 0.99950 1.03169 0.95783 1.21777 1.02380 0.93450 0.99818 1.20526 0.80208 0.87501 0.81954 1.90518 1.38636 1.77372 1.35630 1.46040 1.52078 1.12017 1.24952 1.20212 0.88964 0.81841 1.01015 0.89595 1.19385 0.92776 0.94483 0.94721 1.21132 0.95412 1.30366 1.08839 0.92392 1.24989 0.98905 0.95335 0.94924 1.69954 1.32828 1.31597 1.18712 0.86607 0.84128 0.77406 0.79965 1.20682 1.21216 1.19851 1.20564 0.96408 0.95168 0.94933 1.20904 0.96275 0.99510 0.95936 1.21039 0.93779 0.99581 0.99936 1.20990 0.98996 0.98110 0.97270 1.21039 0.96640 0.99650 0.96759 1.21015 0.92855 0.98938 0.99881 0.93896 0.93579 0.89454 0.92787 0.92718 0.92908 0.89399 0.93588 0.93658 0.89535 0.89145 0.76603 0.95811 0.94883 0.92874 0.86618 0.86796 0.86893 0.86664 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.18 37.16 0.30 -1.69 16 2 C -0.05 -0.62 0.77 -154.51 -0.12 -0.74 16 3 C -0.14 -1.45 8.47 37.15 0.31 -1.13 16 4 C -0.15 -2.11 8.18 37.16 0.30 -1.80 16 5 C -0.13 -1.75 4.77 -27.88 -0.13 -1.88 16 6 C 0.51 8.57 7.20 -10.98 -0.08 8.49 16 7 O -0.54 -10.45 11.01 5.55 0.06 -10.39 16 8 N -0.70 -12.30 4.04 -54.93 -0.22 -12.53 16 9 C 0.18 3.69 2.11 -69.08 -0.15 3.54 16 10 H 0.09 1.89 7.44 -51.93 -0.39 1.51 16 11 C 0.02 0.56 4.49 -27.88 -0.13 0.44 16 12 C -0.52 -13.65 8.84 -34.44 -0.30 -13.95 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 16 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.07 -1.28 4.91 -104.62 -0.51 -1.79 16 21 C -0.11 -1.80 9.32 -39.58 -0.37 -2.17 16 22 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 23 C -0.14 -1.93 10.05 -39.58 -0.40 -2.33 16 24 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 25 C -0.11 -1.88 9.67 -39.58 -0.38 -2.26 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 1.40 5.51 -51.93 -0.29 1.11 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.46 5.51 -51.93 -0.29 1.17 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.40 6.48 8.60 -40.82 -0.35 6.12 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.12 1.81 7.73 -52.48 -0.41 1.40 16 42 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 45 H 0.12 2.00 8.04 -52.49 -0.42 1.57 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -29.54 364.32 -9.09 -38.63 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.60 Total: 7.87 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.54 Total: -20.23 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.51 Total: -37.31 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.06 Total: -10.39 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.54 -9.09 -38.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153517866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.609 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds