Wall clock time and date at job start Tue Mar 31 2020 06:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47237 * 2 1 4 4 C 1.53002 * 109.46612 * 239.99822 * 2 1 3 5 5 C 1.52996 * 109.47352 * 120.00206 * 2 1 3 6 6 C 1.50702 * 109.47159 * 59.99543 * 5 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09001 * 109.46948 * 35.00281 * 9 8 6 11 11 C 1.52999 * 109.47481 * 154.99940 * 9 8 6 12 12 C 1.50698 * 109.47141 * 295.00678 * 11 9 8 13 13 H 1.07994 * 120.00042 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99710 * 179.97438 * 12 11 9 15 15 N 1.31515 * 120.00499 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47105 * 90.00059 * 16 14 12 18 18 H 1.48498 * 109.47057 * 210.00456 * 16 14 12 19 19 H 1.48503 * 109.46745 * 330.00438 * 16 14 12 20 20 C 1.50700 * 109.47514 * 275.00337 * 9 8 6 21 21 C 1.38235 * 119.99909 * 319.72923 * 20 9 8 22 22 C 1.38235 * 120.00203 * 179.78500 * 21 20 9 23 23 C 1.38243 * 119.99736 * 0.43880 * 22 21 20 24 24 C 1.38244 * 119.99802 * 359.81374 * 23 22 21 25 25 C 1.38234 * 120.00041 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.46527 * 299.99899 * 1 2 3 27 27 H 1.09001 * 109.46925 * 60.00124 * 1 2 3 28 28 H 1.09003 * 109.47167 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47184 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47062 * 299.99792 * 3 2 1 31 31 H 1.08998 * 109.46965 * 59.99861 * 3 2 1 32 32 H 1.08994 * 109.47439 * 300.00090 * 4 2 1 33 33 H 1.09001 * 109.47432 * 60.00364 * 4 2 1 34 34 H 1.09008 * 109.46768 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.47066 * 299.99746 * 5 2 1 36 36 H 1.08994 * 109.47405 * 179.97438 * 5 2 1 37 37 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 38 38 H 1.09006 * 109.46798 * 55.00299 * 11 9 8 39 39 H 1.08995 * 109.47322 * 174.99759 * 11 9 8 40 40 H 0.96993 * 120.00753 * 179.97438 * 15 14 12 41 41 H 1.08003 * 119.99755 * 359.97438 * 21 20 9 42 42 H 1.07999 * 120.00430 * 180.26737 * 22 21 20 43 43 H 1.07994 * 120.00105 * 179.82908 * 23 22 21 44 44 H 1.07997 * 119.99648 * 180.02562 * 24 23 22 45 45 H 1.07994 * 119.99956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5377 -2.1421 1.2492 7 8 0.8407 -2.5389 0.3394 8 7 1.8679 -2.9736 2.2572 9 6 1.3845 -4.3565 2.2542 10 1 1.3475 -4.7262 1.2295 11 6 2.3331 -5.2302 3.0776 12 6 3.6817 -5.2777 2.4069 13 1 3.8458 -4.7391 1.4854 14 6 4.7061 -6.0089 2.9698 15 7 4.5062 -6.6653 4.0918 16 14 6.3778 -6.0685 2.1382 17 1 7.2235 -4.9588 2.6468 18 1 7.0331 -7.3673 2.4366 19 1 6.2055 -5.9267 0.6700 20 6 0.0042 -4.4076 2.8568 21 6 -0.2952 -3.6371 3.9648 22 6 -1.5626 -3.6806 4.5149 23 6 -2.5281 -4.5013 3.9624 24 6 -2.2272 -5.2757 2.8574 25 6 -0.9610 -5.2290 2.3048 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2075 -2.1393 34 1 3.1300 -0.7209 -1.2495 35 1 1.6768 -0.2074 2.1392 36 1 3.1300 -0.7217 1.2489 37 1 2.4256 -2.6564 2.9847 38 1 2.4391 -4.8090 4.0774 39 1 1.9272 -6.2392 3.1496 40 1 5.2267 -7.1800 4.4877 41 1 0.4603 -2.9990 4.3988 42 1 -1.7978 -3.0754 5.3779 43 1 -3.5175 -4.5374 4.3937 44 1 -2.9816 -5.9166 2.4256 45 1 -0.7260 -5.8336 1.4414 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153517866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:36 Heat of formation + Delta-G solvation = -54.181873 kcal Electronic energy + Delta-G solvation = -23567.120402 eV Core-core repulsion = 20354.759512 eV Total energy + Delta-G solvation = -3212.360890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24666 -39.96960 -37.70546 -36.41011 -34.69970 -32.68034 -31.69546 -30.59555 -29.06417 -28.05956 -27.97149 -26.51868 -23.79092 -23.38453 -22.08221 -21.09471 -19.75756 -18.66567 -17.86378 -17.64733 -16.90801 -16.42963 -16.33749 -15.85570 -15.49146 -15.28813 -15.13476 -14.91053 -14.50382 -14.18749 -14.14944 -13.74694 -13.63888 -13.36383 -13.03888 -12.88638 -12.88008 -12.62345 -12.60706 -12.47957 -12.28218 -12.07099 -11.94508 -11.83538 -11.59806 -11.54473 -11.48751 -11.30085 -10.61784 -10.30298 -9.84152 -9.73751 -9.49877 -8.20513 -6.30678 0.52561 0.56739 1.38526 1.40609 1.50778 1.86606 2.39486 2.46507 2.99282 3.13801 3.79728 3.93250 3.98892 4.04500 4.05710 4.21755 4.32586 4.34259 4.51228 4.64538 4.67438 4.69610 4.72193 4.78535 4.80800 4.88947 4.90451 5.01361 5.11687 5.13863 5.20599 5.21876 5.23755 5.35401 5.39688 5.44347 5.59166 5.61119 5.62161 5.64889 5.74688 5.79810 5.96982 6.16593 6.21226 6.82089 6.82729 7.38208 7.51900 8.90247 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.006692 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.464004 B = 4183.291495 C = 6584.563105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.135 4.135 4 C -0.151 4.151 5 C -0.128 4.128 6 C 0.506 3.494 7 O -0.570 6.570 8 N -0.702 5.702 9 C 0.201 3.799 10 H 0.055 0.945 11 C 0.038 3.962 12 C -0.528 4.528 13 H 0.053 0.947 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.956 3.044 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.134 4.134 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.406 0.594 38 H 0.011 0.989 39 H 0.000 1.000 40 H 0.264 0.736 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.142 0.858 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 13.768 -1.904 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.050 4.050 3 C -0.192 4.192 4 C -0.209 4.209 5 C -0.167 4.167 6 C 0.294 3.706 7 O -0.450 6.450 8 N -0.351 5.351 9 C 0.096 3.904 10 H 0.073 0.927 11 C 0.000 4.000 12 C -0.566 4.566 13 H 0.072 0.928 14 C -0.188 4.188 15 N -0.567 5.567 16 Si 0.781 3.219 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.097 4.097 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.153 4.153 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.241 0.759 38 H 0.029 0.971 39 H 0.018 0.982 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.168 0.832 44 H 0.160 0.840 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.447 13.371 -2.423 16.550 hybrid contribution 1.370 -0.659 -0.043 1.521 sum -8.077 12.712 -2.466 15.262 Atomic orbital electron populations 1.22016 0.94824 1.02365 1.01231 1.20266 0.95792 0.95609 0.93330 1.21835 1.01263 0.93541 1.02562 1.22055 1.00132 1.01444 0.97225 1.21843 1.03025 0.90572 1.01300 1.21271 0.79564 0.88824 0.80912 1.90529 1.39801 1.78210 1.36506 1.45974 1.52441 1.11037 1.25691 1.19642 0.89641 0.82660 0.98447 0.92689 1.19124 0.92806 0.93480 0.94544 1.21390 0.96519 1.30047 1.08604 0.92839 1.25785 1.02604 0.94976 0.95470 1.70069 1.34023 1.32452 1.20107 0.85585 0.79785 0.77688 0.78807 1.19325 1.21001 1.19750 1.20463 0.95611 0.97128 0.96474 1.21064 0.97689 0.99525 0.95604 1.21439 0.92784 0.99533 1.00453 1.21460 1.00459 0.96582 0.96289 1.21373 0.95971 0.99909 0.96944 1.21159 0.94265 0.99424 1.00420 0.92654 0.92679 0.92768 0.92045 0.91989 0.91507 0.92824 0.92524 0.93252 0.86998 0.87910 0.75869 0.97066 0.98200 0.92740 0.86103 0.83600 0.83191 0.84021 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 8.18 71.98 0.59 -3.12 16 2 C -0.05 -1.16 0.77 -52.18 -0.04 -1.21 16 3 C -0.13 -2.33 8.47 71.98 0.61 -1.72 16 4 C -0.15 -4.10 8.18 71.98 0.59 -3.51 16 5 C -0.13 -3.13 4.77 29.85 0.14 -2.99 16 6 C 0.51 17.23 7.20 87.66 0.63 17.86 16 7 O -0.57 -22.96 11.01 -3.04 -0.03 -22.99 16 8 N -0.70 -25.36 4.04 -446.09 -1.80 -27.16 16 9 C 0.20 8.57 2.11 44.25 0.09 8.67 16 10 H 0.05 2.63 7.44 -2.39 -0.02 2.62 16 11 C 0.04 1.91 4.49 29.85 0.13 2.04 16 12 C -0.53 -28.67 8.84 25.60 0.23 -28.45 16 13 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 14 C 0.01 0.57 5.46 84.65 0.46 1.03 16 15 N -0.93 -54.21 13.29 21.45 0.28 -53.93 16 16 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 C -0.10 -3.66 4.91 -19.87 -0.10 -3.75 16 21 C -0.12 -4.00 9.32 22.27 0.21 -3.79 16 22 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 23 C -0.13 -3.35 10.05 22.27 0.22 -3.12 16 24 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 25 C -0.13 -4.83 9.67 22.27 0.22 -4.62 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.75 5.51 -2.39 -0.01 1.74 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.84 5.51 -2.39 -0.01 1.82 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.41 13.37 8.60 -92.71 -0.80 12.57 16 38 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.12 3.75 7.73 -2.91 -0.02 3.73 16 42 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 43 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 44 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 45 H 0.11 3.99 8.04 -2.91 -0.02 3.97 16 Total: -1.00 -66.38 364.32 5.06 -61.31 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.16 Total: 30.58 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 4.43 Total: -33.23 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -1.52 Total: -81.09 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.03 Total: -22.99 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.38 5.06 -61.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153517866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.131 kcal (2) G-P(sol) polarization free energy of solvation -66.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds