Wall clock time and date at job start Tue Mar 31 2020 06:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47017 * 2 1 4 4 C 1.52994 * 109.46834 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47118 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47159 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09001 * 109.46948 * 35.00281 * 9 8 6 11 11 C 1.52999 * 109.47481 * 154.99940 * 9 8 6 12 12 C 1.50698 * 109.47141 * 295.00678 * 11 9 8 13 13 H 1.07994 * 120.00042 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99710 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99843 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00259 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47492 * 89.99579 * 16 14 12 18 18 H 1.48501 * 109.47369 * 209.99572 * 16 14 12 19 19 H 1.48498 * 109.47236 * 329.99680 * 16 14 12 20 20 C 1.50700 * 109.47514 * 275.00337 * 9 8 6 21 21 C 1.38235 * 119.99909 * 319.72923 * 20 9 8 22 22 C 1.38235 * 120.00203 * 179.78500 * 21 20 9 23 23 C 1.38243 * 119.99736 * 0.43880 * 22 21 20 24 24 C 1.38244 * 119.99802 * 359.81374 * 23 22 21 25 25 C 1.38234 * 120.00041 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47038 * 300.00385 * 1 2 3 28 28 H 1.09000 * 109.47414 * 59.99969 * 1 2 3 29 29 H 1.08990 * 109.47021 * 239.99760 * 2 1 3 30 30 H 1.09002 * 109.46620 * 119.99568 * 2 1 3 31 31 H 1.08998 * 109.47269 * 60.00281 * 3 2 1 32 32 H 1.09003 * 109.46642 * 299.99608 * 3 2 1 33 33 H 1.09004 * 109.47131 * 59.99670 * 4 3 2 34 34 H 1.09000 * 109.47504 * 299.99974 * 4 3 2 35 35 H 1.09004 * 109.47066 * 60.00025 * 5 4 3 36 36 H 1.08994 * 109.47405 * 299.99855 * 5 4 3 37 37 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 38 38 H 1.09006 * 109.46798 * 55.00299 * 11 9 8 39 39 H 1.08995 * 109.47322 * 174.99759 * 11 9 8 40 40 H 0.97004 * 119.99978 * 180.02562 * 15 14 12 41 41 H 1.08003 * 119.99755 * 359.97438 * 21 20 9 42 42 H 1.07999 * 120.00430 * 180.26737 * 22 21 20 43 43 H 1.07994 * 120.00105 * 179.82908 * 23 22 21 44 44 H 1.07997 * 119.99648 * 180.02562 * 24 23 22 45 45 H 1.07994 * 119.99956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.5870 2.8849 -0.0013 7 8 6.1934 1.8346 -0.0013 8 7 6.2609 4.0521 -0.0074 9 6 7.7259 4.0521 -0.0135 10 1 8.0868 3.2086 -0.6021 11 6 8.2334 5.3576 -0.6290 12 6 7.8286 5.4200 -2.0793 13 1 7.2660 4.6093 -2.5182 14 6 8.1765 6.5120 -2.8457 15 7 7.8237 6.5662 -4.1115 16 14 9.1502 7.9138 -2.0867 17 1 10.6030 7.6511 -2.2468 18 1 8.7993 9.1860 -2.7678 19 1 8.8225 8.0190 -0.6422 20 6 8.2342 3.9322 1.4001 21 6 7.6077 4.6227 2.4207 22 6 8.0712 4.5093 3.7181 23 6 9.1668 3.7125 3.9935 24 6 9.7965 3.0262 2.9720 25 6 9.3303 3.1362 1.6753 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.9329 0.9287 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 3.7170 3.3991 0.8887 36 1 3.7164 3.3985 -0.8912 37 1 5.7760 4.8922 -0.0077 38 1 7.8010 6.2035 -0.0944 39 1 9.3200 5.3969 -0.5530 40 1 8.0688 7.3343 -4.6509 41 1 6.7542 5.2483 2.2049 42 1 7.5790 5.0453 4.5162 43 1 9.5306 3.6261 5.0066 44 1 10.6522 2.4035 3.1872 45 1 9.8220 2.5997 0.8774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153671775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:42 Heat of formation + Delta-G solvation = -49.991351 kcal Electronic energy + Delta-G solvation = -22634.946891 eV Core-core repulsion = 19422.767716 eV Total energy + Delta-G solvation = -3212.179175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69976 -38.52065 -36.08026 -35.16369 -32.67772 -32.22391 -31.06843 -30.54186 -29.31904 -27.22957 -24.95166 -22.62525 -22.25348 -21.77268 -21.01426 -20.02257 -19.63631 -17.16728 -16.55779 -16.34320 -15.97751 -15.50615 -15.00678 -14.60568 -14.35769 -14.17136 -13.77009 -13.47036 -13.19996 -13.07854 -13.01416 -12.83989 -12.60892 -12.40436 -11.91794 -11.82106 -11.66022 -11.35023 -11.11625 -11.00074 -10.92404 -10.80809 -10.73841 -10.63441 -10.49614 -10.16818 -9.85932 -9.37590 -9.26340 -8.64714 -8.61163 -8.44784 -8.29542 -6.12362 -4.12116 1.67802 1.70478 3.18585 3.24942 3.33126 3.35254 3.74963 4.15493 4.36926 4.76376 4.86663 4.96476 5.15590 5.18312 5.19879 5.21714 5.23318 5.27804 5.38761 5.44979 5.56249 5.65953 5.70178 5.79548 5.81389 5.83692 5.89303 5.98297 5.98771 6.08478 6.16147 6.24435 6.31391 6.34078 6.43396 6.45143 6.73478 6.75979 6.83002 6.93293 7.06399 7.30433 7.35803 7.64183 8.14201 8.43032 8.81366 8.93471 9.48515 11.00408 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.004715 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.723755 B = 5936.575432 C = 8057.452598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.103 4.103 5 C -0.141 4.141 6 C 0.511 3.489 7 O -0.552 6.552 8 N -0.703 5.703 9 C 0.193 3.807 10 H 0.091 0.909 11 C -0.014 4.014 12 C -0.520 4.520 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.898 5.898 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.075 4.075 21 C -0.109 4.109 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.108 4.108 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.401 0.599 38 H 0.023 0.977 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.882 -6.516 13.428 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.140 4.140 5 C -0.181 4.181 6 C 0.297 3.703 7 O -0.430 6.430 8 N -0.352 5.352 9 C 0.089 3.911 10 H 0.109 0.891 11 C -0.051 4.051 12 C -0.558 4.558 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.703 3.297 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.076 4.076 21 C -0.128 4.128 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.141 4.141 25 C -0.127 4.127 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.235 0.765 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.436 -7.143 13.242 16.783 hybrid contribution 0.370 1.354 0.230 1.423 sum -7.067 -5.789 13.472 16.277 Atomic orbital electron populations 1.21783 0.96138 1.01354 1.01701 1.21527 0.95509 0.97135 1.02146 1.21644 0.95515 0.96686 1.01955 1.21321 0.94210 0.95087 1.03430 1.21677 0.92682 0.99656 1.04109 1.20609 0.89957 0.83934 0.75779 1.90650 1.70545 1.31448 1.50338 1.45929 1.07197 1.08308 1.73761 1.19932 0.79216 1.01909 0.90060 0.89121 1.19865 0.96839 0.91232 0.97175 1.21016 1.36184 1.06080 0.92548 0.90624 1.24987 0.95421 0.98067 0.94641 1.69908 1.46527 1.30574 1.06619 0.86851 0.80896 0.82051 0.79931 1.20213 1.21345 1.18983 1.20593 0.95201 0.95192 0.96650 1.20928 1.00019 0.99377 0.92449 1.21055 0.97246 0.99536 0.96504 1.21019 0.96928 0.98552 0.98728 1.21066 0.99979 0.99950 0.93056 1.21051 0.96581 0.98373 0.96646 0.93002 0.92899 0.92772 0.91944 0.92095 0.92149 0.91913 0.91236 0.91512 0.89510 0.88879 0.76505 0.95887 0.95353 0.92633 0.86505 0.86677 0.86765 0.86508 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.13 -1.17 5.93 -26.73 -0.16 -1.33 16 3 C -0.12 -1.20 5.21 -26.73 -0.14 -1.34 16 4 C -0.10 -1.29 4.50 -26.74 -0.12 -1.41 16 5 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 6 C 0.51 8.98 7.79 -10.98 -0.09 8.89 16 7 O -0.55 -11.64 15.64 5.55 0.09 -11.55 16 8 N -0.70 -12.48 4.04 -54.93 -0.22 -12.71 16 9 C 0.19 3.84 2.11 -69.08 -0.15 3.70 16 10 H 0.09 2.02 7.44 -51.93 -0.39 1.63 16 11 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 12 C -0.52 -13.94 9.39 -34.44 -0.32 -14.27 16 13 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 16 Si 0.88 20.85 27.47 -169.99 -4.67 16.18 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 20 C -0.08 -1.34 4.91 -104.62 -0.51 -1.85 16 21 C -0.11 -1.75 9.32 -39.58 -0.37 -2.11 16 22 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 23 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 24 C -0.12 -1.77 10.05 -39.58 -0.40 -2.16 16 25 C -0.11 -1.81 9.67 -39.58 -0.38 -2.19 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.40 6.42 8.60 -40.82 -0.35 6.06 16 38 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 39 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.12 1.71 7.73 -52.48 -0.41 1.31 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.12 1.96 8.04 -52.49 -0.42 1.54 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -31.57 372.02 -9.68 -41.25 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.83 Total: 7.02 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -3.42 Total: -19.84 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.55 Total: -38.67 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.57 -9.68 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153671775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.741 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds