Wall clock time and date at job start Tue Mar 31 2020 06:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47017 * 2 1 4 4 C 1.52994 * 109.46834 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47118 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47159 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09001 * 109.46948 * 35.00281 * 9 8 6 11 11 C 1.52999 * 109.47481 * 154.99940 * 9 8 6 12 12 C 1.50698 * 109.47141 * 295.00678 * 11 9 8 13 13 H 1.07994 * 120.00042 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99710 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99843 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00259 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47492 * 89.99579 * 16 14 12 18 18 H 1.48501 * 109.47369 * 209.99572 * 16 14 12 19 19 H 1.48498 * 109.47236 * 329.99680 * 16 14 12 20 20 C 1.50700 * 109.47514 * 275.00337 * 9 8 6 21 21 C 1.38235 * 119.99909 * 319.72923 * 20 9 8 22 22 C 1.38235 * 120.00203 * 179.78500 * 21 20 9 23 23 C 1.38243 * 119.99736 * 0.43880 * 22 21 20 24 24 C 1.38244 * 119.99802 * 359.81374 * 23 22 21 25 25 C 1.38234 * 120.00041 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47038 * 300.00385 * 1 2 3 28 28 H 1.09000 * 109.47414 * 59.99969 * 1 2 3 29 29 H 1.08990 * 109.47021 * 239.99760 * 2 1 3 30 30 H 1.09002 * 109.46620 * 119.99568 * 2 1 3 31 31 H 1.08998 * 109.47269 * 60.00281 * 3 2 1 32 32 H 1.09003 * 109.46642 * 299.99608 * 3 2 1 33 33 H 1.09004 * 109.47131 * 59.99670 * 4 3 2 34 34 H 1.09000 * 109.47504 * 299.99974 * 4 3 2 35 35 H 1.09004 * 109.47066 * 60.00025 * 5 4 3 36 36 H 1.08994 * 109.47405 * 299.99855 * 5 4 3 37 37 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 38 38 H 1.09006 * 109.46798 * 55.00299 * 11 9 8 39 39 H 1.08995 * 109.47322 * 174.99759 * 11 9 8 40 40 H 0.97004 * 119.99978 * 180.02562 * 15 14 12 41 41 H 1.08003 * 119.99755 * 359.97438 * 21 20 9 42 42 H 1.07999 * 120.00430 * 180.26737 * 22 21 20 43 43 H 1.07994 * 120.00105 * 179.82908 * 23 22 21 44 44 H 1.07997 * 119.99648 * 180.02562 * 24 23 22 45 45 H 1.07994 * 119.99956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.5870 2.8849 -0.0013 7 8 6.1934 1.8346 -0.0013 8 7 6.2609 4.0521 -0.0074 9 6 7.7259 4.0521 -0.0135 10 1 8.0868 3.2086 -0.6021 11 6 8.2334 5.3576 -0.6290 12 6 7.8286 5.4200 -2.0793 13 1 7.2660 4.6093 -2.5182 14 6 8.1765 6.5120 -2.8457 15 7 7.8237 6.5662 -4.1115 16 14 9.1502 7.9138 -2.0867 17 1 10.6030 7.6511 -2.2468 18 1 8.7993 9.1860 -2.7678 19 1 8.8225 8.0190 -0.6422 20 6 8.2342 3.9322 1.4001 21 6 7.6077 4.6227 2.4207 22 6 8.0712 4.5093 3.7181 23 6 9.1668 3.7125 3.9935 24 6 9.7965 3.0262 2.9720 25 6 9.3303 3.1362 1.6753 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.9329 0.9287 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 3.7170 3.3991 0.8887 36 1 3.7164 3.3985 -0.8912 37 1 5.7760 4.8922 -0.0077 38 1 7.8010 6.2035 -0.0944 39 1 9.3200 5.3969 -0.5530 40 1 8.0688 7.3343 -4.6509 41 1 6.7542 5.2483 2.2049 42 1 7.5790 5.0453 4.5162 43 1 9.5306 3.6261 5.0066 44 1 10.6522 2.4035 3.1872 45 1 9.8220 2.5997 0.8774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153671775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:42 Heat of formation + Delta-G solvation = -67.242319 kcal Electronic energy + Delta-G solvation = -22635.694949 eV Core-core repulsion = 19422.767716 eV Total energy + Delta-G solvation = -3212.927233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.09102 -39.77683 -37.14196 -36.55980 -34.68810 -33.35396 -32.33492 -31.69901 -30.97888 -28.27767 -26.53190 -23.68445 -23.57319 -23.19441 -21.86739 -21.42592 -21.04977 -19.06783 -17.98877 -17.68281 -17.06390 -16.85845 -16.32422 -16.12915 -15.67740 -15.43199 -14.98888 -14.65632 -14.51177 -14.25157 -14.17694 -14.07653 -14.03036 -13.78824 -13.52682 -13.06924 -12.78988 -12.60904 -12.51855 -12.41577 -11.94398 -11.87936 -11.81253 -11.74522 -11.73443 -11.66314 -11.42487 -11.36304 -10.83459 -10.70682 -9.97038 -9.76609 -9.54510 -8.28738 -6.33659 0.49001 0.54806 1.36984 1.38159 1.49184 1.78037 2.35143 2.39931 2.95866 3.07119 3.82549 3.89886 3.94608 4.02689 4.04203 4.20055 4.29935 4.31851 4.33887 4.39014 4.50012 4.58499 4.70219 4.73078 4.76008 4.77642 4.88212 4.95390 5.02056 5.08129 5.13230 5.14123 5.17769 5.23738 5.28241 5.38144 5.46362 5.53313 5.54553 5.59601 5.63665 5.64999 5.87881 6.17152 6.25378 6.70791 6.75849 7.30368 7.41190 8.87567 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.004715 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.723755 B = 5936.575432 C = 8057.452598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.113 4.113 4 C -0.098 4.098 5 C -0.132 4.132 6 C 0.503 3.497 7 O -0.594 6.594 8 N -0.700 5.700 9 C 0.203 3.797 10 H 0.051 0.949 11 C -0.003 4.003 12 C -0.520 4.520 13 H 0.031 0.969 14 C 0.012 3.988 15 N -0.947 5.947 16 Si 0.945 3.055 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.242 1.242 20 C -0.099 4.099 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.134 4.134 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.410 0.590 38 H 0.038 0.962 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.127 0.873 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.142 0.858 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 -5.109 16.904 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.150 4.150 4 C -0.137 4.137 5 C -0.171 4.171 6 C 0.291 3.709 7 O -0.475 6.475 8 N -0.350 5.350 9 C 0.097 3.903 10 H 0.069 0.931 11 C -0.041 4.041 12 C -0.558 4.558 13 H 0.049 0.951 14 C -0.185 4.185 15 N -0.587 5.587 16 Si 0.769 3.231 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.165 1.165 20 C -0.100 4.100 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.152 4.152 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.246 0.754 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.145 0.855 42 H 0.166 0.834 43 H 0.168 0.832 44 H 0.160 0.840 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.988 -5.730 16.736 19.409 hybrid contribution 0.547 0.806 -0.860 1.299 sum -7.441 -4.924 15.876 18.211 Atomic orbital electron populations 1.21759 0.94820 1.01960 1.02164 1.21541 0.96653 0.96651 1.01722 1.21594 0.93116 0.97369 1.02943 1.21277 0.96234 0.94390 1.01749 1.21725 0.88838 1.00478 1.06105 1.21470 0.91866 0.83026 0.74501 1.90625 1.71832 1.32845 1.52216 1.45909 1.06497 1.09032 1.73530 1.19520 0.80480 0.98843 0.91413 0.93109 1.19717 0.96684 0.93224 0.94489 1.21194 1.35168 1.04585 0.94886 0.95074 1.25896 0.96603 1.01102 0.94943 1.70063 1.48465 1.31786 1.08435 0.85737 0.78998 0.78181 0.80194 1.19950 1.20974 1.16475 1.20397 0.96550 0.97499 0.95588 1.21110 1.00324 0.99386 0.92936 1.21460 0.97124 0.99145 0.96320 1.21489 0.96083 0.96955 1.00066 1.21381 1.00634 1.00078 0.92088 1.21180 0.97015 0.99097 0.97948 0.92403 0.92105 0.92606 0.92855 0.92178 0.90483 0.91473 0.93699 0.92546 0.86155 0.87867 0.75435 0.94360 0.95584 0.92506 0.85531 0.83371 0.83166 0.84030 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.45 16 2 C -0.13 -2.28 5.93 30.60 0.18 -2.10 16 3 C -0.11 -2.09 5.21 30.59 0.16 -1.93 16 4 C -0.10 -2.47 4.50 30.59 0.14 -2.34 16 5 C -0.13 -3.35 5.70 29.85 0.17 -3.18 16 6 C 0.50 18.20 7.79 87.66 0.68 18.88 16 7 O -0.59 -26.46 15.64 -3.04 -0.05 -26.51 16 8 N -0.70 -25.46 4.04 -446.09 -1.80 -27.26 16 9 C 0.20 8.38 2.11 44.25 0.09 8.47 16 10 H 0.05 2.46 7.44 -2.39 -0.02 2.44 16 11 C 0.00 -0.16 3.56 29.85 0.11 -0.05 16 12 C -0.52 -28.92 9.39 25.60 0.24 -28.68 16 13 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 14 C 0.01 0.68 5.47 84.65 0.46 1.14 16 15 N -0.95 -58.15 13.96 21.45 0.30 -57.85 16 16 Si 0.95 42.83 27.47 68.60 1.88 44.71 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 20 C -0.10 -3.54 4.91 -19.87 -0.10 -3.64 16 21 C -0.12 -3.56 9.32 22.27 0.21 -3.36 16 22 C -0.12 -2.98 10.05 22.27 0.22 -2.75 16 23 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 24 C -0.12 -3.31 10.05 22.27 0.22 -3.09 16 25 C -0.13 -4.52 9.67 22.27 0.22 -4.30 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 1.33 8.10 -2.38 -0.02 1.31 16 34 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 35 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.41 13.08 8.60 -92.71 -0.80 12.28 16 38 H 0.04 1.62 7.20 -2.38 -0.02 1.61 16 39 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.13 3.41 7.73 -2.91 -0.02 3.39 16 42 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 43 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 45 H 0.11 3.79 8.04 -2.91 -0.02 3.77 16 Total: -1.00 -71.98 372.02 4.37 -67.61 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.09 Total: 30.41 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 3.94 Total: -31.11 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -1.50 Total: -85.11 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.71 kcal Total: -71.98 4.37 -67.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153671775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.365 kcal (2) G-P(sol) polarization free energy of solvation -71.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds