Wall clock time and date at job start Tue Mar 31 2020 06:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46985 * 2 1 4 4 C 1.52994 * 109.47185 * 119.99813 * 2 1 3 5 5 C 1.52996 * 109.47118 * 65.00040 * 4 2 1 6 6 C 1.50702 * 109.47159 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09001 * 109.46948 * 35.00281 * 9 8 6 11 11 C 1.52999 * 109.47481 * 154.99940 * 9 8 6 12 12 C 1.50698 * 109.47141 * 295.00678 * 11 9 8 13 13 H 1.07994 * 120.00042 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99710 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99843 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00259 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47492 * 89.99579 * 16 14 12 18 18 H 1.48501 * 109.47369 * 209.99572 * 16 14 12 19 19 H 1.48498 * 109.47236 * 329.99680 * 16 14 12 20 20 C 1.50700 * 109.47514 * 275.00337 * 9 8 6 21 21 C 1.38235 * 119.99909 * 319.72923 * 20 9 8 22 22 C 1.38235 * 120.00203 * 179.78500 * 21 20 9 23 23 C 1.38243 * 119.99736 * 0.43880 * 22 21 20 24 24 C 1.38244 * 119.99802 * 359.81374 * 23 22 21 25 25 C 1.38234 * 120.00041 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.46721 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47348 * 300.00153 * 1 2 3 28 28 H 1.09003 * 109.47134 * 59.99946 * 1 2 3 29 29 H 1.09000 * 109.47288 * 240.00400 * 2 1 3 30 30 H 1.08994 * 109.46886 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.46973 * 299.99970 * 3 2 1 32 32 H 1.09000 * 109.46781 * 60.00090 * 3 2 1 33 33 H 1.09004 * 109.47131 * 305.00105 * 4 2 1 34 34 H 1.09000 * 109.47504 * 185.00409 * 4 2 1 35 35 H 1.09004 * 109.47066 * 60.00025 * 5 4 2 36 36 H 1.08994 * 109.47405 * 299.99855 * 5 4 2 37 37 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 38 38 H 1.09006 * 109.46798 * 55.00299 * 11 9 8 39 39 H 1.08995 * 109.47322 * 174.99759 * 11 9 8 40 40 H 0.97004 * 119.99978 * 180.02562 * 15 14 12 41 41 H 1.08003 * 119.99755 * 359.97438 * 21 20 9 42 42 H 1.07999 * 120.00430 * 180.26737 * 22 21 20 43 43 H 1.07994 * 120.00105 * 179.82908 * 23 22 21 44 44 H 1.07997 * 119.99648 * 180.02562 * 24 23 22 45 45 H 1.07994 * 119.99956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 6 2.1382 -2.9059 2.4182 7 8 2.7588 -2.2934 3.2612 8 7 1.8930 -4.2207 2.5845 9 6 2.3767 -4.9101 3.7832 10 1 2.3301 -4.2325 4.6358 11 6 1.5003 -6.1341 4.0563 12 6 0.1012 -5.6855 4.3914 13 1 -0.1388 -4.6327 4.4084 14 6 -0.8725 -6.6193 4.6763 15 7 -2.0933 -6.2278 4.9693 16 14 -0.4572 -8.4403 4.6476 17 1 -0.0046 -8.8662 5.9962 18 1 -1.6628 -9.2169 4.2620 19 1 0.6258 -8.6855 3.6617 20 6 3.8019 -5.3505 3.5690 21 6 4.1900 -5.8646 2.3459 22 6 5.4983 -6.2644 2.1479 23 6 6.4165 -6.1586 3.1759 24 6 6.0271 -5.6493 4.4007 25 6 4.7198 -5.2454 4.5973 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6054 -0.2616 2.1370 34 1 3.1263 -0.6442 1.2952 35 1 2.0699 -2.6549 0.3002 36 1 0.5490 -2.2723 1.1421 37 1 1.3965 -4.7106 1.9105 38 1 1.4759 -6.7685 3.1701 39 1 1.9122 -6.6963 4.8942 40 1 -2.7783 -6.8847 5.1701 41 1 3.4716 -5.9510 1.5440 42 1 5.8026 -6.6621 1.1910 43 1 7.4380 -6.4735 3.0221 44 1 6.7445 -5.5662 5.2037 45 1 4.4157 -4.8472 5.5539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153682267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:47 Heat of formation + Delta-G solvation = -64.002016 kcal Electronic energy + Delta-G solvation = -22943.229136 eV Core-core repulsion = 19730.442412 eV Total energy + Delta-G solvation = -3212.786723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10571 -39.80544 -37.57477 -36.70479 -34.68631 -32.97506 -31.75182 -31.39571 -30.95725 -27.98018 -26.99229 -25.12400 -23.60328 -23.25832 -21.67190 -21.11292 -20.72895 -19.06639 -18.02354 -17.68089 -17.03801 -16.63232 -16.30150 -16.07538 -15.57101 -15.39085 -15.03912 -14.68945 -14.56790 -14.40294 -14.18651 -14.01297 -13.82352 -13.55377 -13.48192 -13.05939 -13.02599 -12.64296 -12.52600 -12.42025 -12.20099 -11.94012 -11.74334 -11.73402 -11.65773 -11.49546 -11.43234 -11.41821 -10.83617 -10.71056 -9.96774 -9.76444 -9.54352 -8.28603 -6.33456 0.49169 0.54965 1.36968 1.38195 1.49139 1.78227 2.35230 2.40122 2.96035 3.07353 3.81407 3.91130 3.93195 4.01267 4.02704 4.20167 4.22654 4.32007 4.36836 4.42635 4.57106 4.60309 4.68403 4.73010 4.76456 4.82399 4.88241 4.98822 5.02149 5.07720 5.14084 5.16447 5.17892 5.22259 5.27663 5.33780 5.50000 5.54361 5.55677 5.59883 5.63823 5.65133 5.88041 6.17295 6.25561 6.70958 6.76010 7.30598 7.41390 8.87731 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010004 B = 0.005437 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.267189 B = 5148.336983 C = 7377.450831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.093 4.093 5 C -0.133 4.133 6 C 0.503 3.497 7 O -0.594 6.594 8 N -0.700 5.700 9 C 0.203 3.797 10 H 0.051 0.949 11 C -0.004 4.004 12 C -0.520 4.520 13 H 0.031 0.969 14 C 0.013 3.987 15 N -0.947 5.947 16 Si 0.945 3.055 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.242 1.242 20 C -0.099 4.099 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.133 4.133 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.410 0.590 38 H 0.038 0.962 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.127 0.873 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.142 0.858 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.368 4.192 -12.920 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.131 4.131 5 C -0.172 4.172 6 C 0.292 3.708 7 O -0.475 6.475 8 N -0.350 5.350 9 C 0.098 3.902 10 H 0.069 0.931 11 C -0.042 4.042 12 C -0.558 4.558 13 H 0.049 0.951 14 C -0.185 4.185 15 N -0.588 5.588 16 Si 0.768 3.232 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.165 1.165 20 C -0.100 4.100 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.152 4.152 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.245 0.755 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.145 0.855 42 H 0.166 0.834 43 H 0.168 0.832 44 H 0.160 0.840 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.615 4.560 -12.282 18.894 hybrid contribution -0.890 -0.762 0.596 1.315 sum 12.724 3.798 -11.685 17.688 Atomic orbital electron populations 1.21936 0.95081 1.02114 1.01841 1.21117 0.96003 0.96484 0.97345 1.21829 1.01025 0.95576 1.01955 1.21332 1.00696 0.92842 0.98221 1.21773 1.03519 0.96541 0.95393 1.21459 0.78578 0.81873 0.88900 1.90624 1.43428 1.66829 1.46614 1.45907 1.56354 1.09625 1.23080 1.19518 0.89339 0.93796 0.87583 0.93123 1.19722 0.93272 0.93620 0.97544 1.21188 0.94101 0.93511 1.46970 0.95077 1.25884 0.94504 1.03984 0.94096 1.70063 1.03583 1.36144 1.48983 0.85746 0.78481 0.79313 0.79625 1.19937 1.20984 1.16494 1.20395 0.95296 0.98976 0.95359 1.21109 0.97318 0.98930 0.96411 1.21458 0.92670 0.99595 1.00319 1.21487 1.00764 0.99475 0.92855 1.21379 0.95228 0.98823 0.98736 1.21177 0.94422 1.00886 0.98728 0.92364 0.93720 0.91408 0.89652 0.92630 0.91340 0.93487 0.93741 0.92451 0.86212 0.87891 0.75461 0.94361 0.95575 0.92516 0.85548 0.83377 0.83171 0.84037 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.95 71.98 0.64 -2.20 16 2 C -0.09 -1.71 2.92 -10.79 -0.03 -1.74 16 3 C -0.15 -2.53 9.19 71.99 0.66 -1.87 16 4 C -0.09 -2.35 3.97 30.59 0.12 -2.23 16 5 C -0.13 -3.40 5.45 29.85 0.16 -3.24 16 6 C 0.50 18.25 7.79 87.66 0.68 18.94 16 7 O -0.59 -26.46 15.64 -3.04 -0.05 -26.51 16 8 N -0.70 -25.49 4.04 -446.09 -1.80 -27.30 16 9 C 0.20 8.39 2.11 44.25 0.09 8.48 16 10 H 0.05 2.45 7.44 -2.39 -0.02 2.44 16 11 C 0.00 -0.18 3.56 29.85 0.11 -0.07 16 12 C -0.52 -28.86 9.39 25.60 0.24 -28.62 16 13 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 14 C 0.01 0.72 5.47 84.65 0.46 1.18 16 15 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16 16 Si 0.94 42.82 27.47 68.60 1.88 44.71 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 20 C -0.10 -3.54 4.91 -19.87 -0.10 -3.63 16 21 C -0.12 -3.57 9.32 22.27 0.21 -3.36 16 22 C -0.12 -2.97 10.05 22.27 0.22 -2.75 16 23 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 24 C -0.12 -3.30 10.05 22.27 0.22 -3.08 16 25 C -0.13 -4.51 9.67 22.27 0.22 -4.29 16 26 H 0.06 1.09 6.57 -2.38 -0.02 1.08 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 1.33 8.10 -2.38 -0.02 1.31 16 34 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 35 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.10 2.51 6.57 -2.39 -0.02 2.50 16 37 H 0.41 13.10 8.60 -92.71 -0.80 12.31 16 38 H 0.04 1.62 7.20 -2.38 -0.02 1.61 16 39 H 0.03 1.19 7.57 -2.39 -0.02 1.18 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.13 3.41 7.73 -2.91 -0.02 3.39 16 42 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 43 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 45 H 0.11 3.79 8.04 -2.91 -0.02 3.76 16 Total: -1.00 -71.89 368.09 4.57 -67.32 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.10 Total: 30.87 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 4.14 Total: -31.23 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -1.50 Total: -85.15 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.88 Total: 44.71 kcal Total: -71.89 4.57 -67.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153682267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.319 kcal (2) G-P(sol) polarization free energy of solvation -71.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds