Wall clock time and date at job start Tue Mar 31 2020 06:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47003 * 2 1 4 4 C 1.53001 * 109.47291 * 119.99536 * 2 1 3 5 5 C 1.53000 * 109.47267 * 174.99870 * 4 2 1 6 6 C 1.50697 * 109.47005 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00067 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00181 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00556 * 180.02562 * 8 6 5 10 10 H 1.09009 * 109.46624 * 324.99750 * 9 8 6 11 11 C 1.52996 * 109.47466 * 205.00158 * 9 8 6 12 12 C 1.50702 * 109.47159 * 64.99479 * 11 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.50700 * 109.47471 * 84.99708 * 9 8 6 21 21 C 1.38233 * 119.99377 * 39.72808 * 20 9 8 22 22 C 1.38237 * 119.99600 * 179.78842 * 21 20 9 23 23 C 1.38241 * 119.99990 * 0.44354 * 22 21 20 24 24 C 1.38237 * 119.99716 * 359.81238 * 23 22 21 25 25 C 1.38228 * 120.00326 * 220.00479 * 20 9 8 26 26 H 1.08997 * 109.47529 * 300.00325 * 1 2 3 27 27 H 1.09006 * 109.46612 * 60.00246 * 1 2 3 28 28 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47460 * 240.00048 * 2 1 3 30 30 H 1.08997 * 109.47260 * 299.99664 * 3 2 1 31 31 H 1.08997 * 109.47244 * 59.99501 * 3 2 1 32 32 H 1.09004 * 109.47063 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46697 * 55.00403 * 4 2 1 34 34 H 1.09000 * 109.47045 * 295.00705 * 4 2 1 35 35 H 1.09003 * 109.46827 * 60.00613 * 5 4 2 36 36 H 1.08995 * 109.47370 * 300.00619 * 5 4 2 37 37 H 0.97002 * 120.00072 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.47066 * 304.99682 * 11 9 8 39 39 H 1.08994 * 109.47405 * 184.99512 * 11 9 8 40 40 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 41 41 H 1.07995 * 120.00514 * 359.97438 * 21 20 9 42 42 H 1.08001 * 120.00058 * 180.28006 * 22 21 20 43 43 H 1.07995 * 120.00194 * 179.83256 * 23 22 21 44 44 H 1.08001 * 119.99824 * 180.02562 * 24 23 22 45 45 H 1.08005 * 119.99906 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.8310 1.1880 6 6 4.0671 -1.5418 2.4182 7 8 3.2826 -1.9235 3.2608 8 7 5.3880 -1.7535 2.5822 9 6 5.8763 -2.4450 3.7778 10 1 5.2548 -2.1764 4.6321 11 6 7.3240 -2.0319 4.0504 12 6 7.3721 -0.5647 4.3909 13 1 6.4612 0.0152 4.4112 14 6 8.5784 0.0362 4.6825 15 7 9.6876 -0.6700 4.6582 16 14 8.6370 1.8531 5.1120 17 1 7.8104 2.1032 6.3201 18 1 10.0417 2.2530 5.3813 19 1 8.1059 2.6479 3.9755 20 6 5.8117 -3.9345 3.5582 21 6 6.1532 -4.4673 2.3293 22 6 6.0982 -5.8340 2.1291 23 6 5.6930 -6.6671 3.1552 24 6 5.3464 -6.1337 4.3826 25 6 5.4056 -4.7674 4.5839 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6054 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 3.9995 0.1676 1.1421 36 1 3.8532 -1.3939 0.3003 37 1 6.0154 -1.4486 1.9081 38 1 7.9285 -2.2190 3.1629 39 1 7.7161 -2.6118 4.8859 40 1 10.5363 -0.2472 4.8630 41 1 6.4658 -3.8162 1.5264 42 1 6.3693 -6.2507 1.1704 43 1 5.6474 -7.7346 2.9981 44 1 5.0302 -6.7845 5.1843 45 1 5.1349 -4.3507 5.5429 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153682459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:51 Heat of formation + Delta-G solvation = -50.514953 kcal Electronic energy + Delta-G solvation = -22908.107299 eV Core-core repulsion = 19695.905418 eV Total energy + Delta-G solvation = -3212.201880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.64921 -38.49379 -36.58197 -35.09068 -32.72680 -31.51200 -30.52506 -30.23351 -28.73135 -27.23931 -25.26372 -23.93090 -22.27654 -21.93474 -20.33938 -19.80186 -19.59404 -16.97590 -16.41115 -16.15315 -15.69051 -15.33281 -14.87249 -14.55193 -14.49246 -14.09564 -13.91323 -13.47675 -13.09679 -12.95908 -12.79745 -12.47485 -12.36738 -12.20954 -12.10167 -11.80616 -11.54389 -11.28155 -11.13351 -10.95597 -10.75720 -10.71501 -10.65231 -10.62069 -10.51460 -10.44120 -9.76892 -9.35733 -9.22247 -8.53339 -8.45347 -8.36672 -8.16381 -6.09142 -4.12599 1.79655 1.81597 3.20474 3.28116 3.33395 3.36203 3.80385 4.25820 4.39646 4.80599 4.84884 4.88086 5.22708 5.27223 5.28438 5.28828 5.37553 5.38799 5.48792 5.54787 5.56871 5.63697 5.73141 5.77880 5.89020 5.92363 5.95599 6.04128 6.04537 6.14747 6.21894 6.35511 6.37811 6.43975 6.46118 6.60311 6.85908 6.86711 6.96812 7.13667 7.41999 7.49800 7.64221 7.87509 8.19232 8.26895 8.84675 8.93046 9.52299 11.01392 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.008427 B = 0.005957 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.819528 B = 4699.368042 C = 7486.778117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.097 4.097 5 C -0.143 4.143 6 C 0.508 3.492 7 O -0.553 6.553 8 N -0.702 5.702 9 C 0.183 3.817 10 H 0.085 0.915 11 C 0.024 3.976 12 C -0.520 4.520 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.070 4.070 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.109 4.109 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.400 0.600 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.453 -3.801 -9.562 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.135 4.135 5 C -0.183 4.183 6 C 0.294 3.706 7 O -0.432 6.432 8 N -0.351 5.351 9 C 0.079 3.921 10 H 0.103 0.897 11 C -0.013 4.013 12 C -0.559 4.559 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.071 4.071 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.127 4.127 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.235 0.765 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.801 -4.047 -8.917 15.335 hybrid contribution 0.611 1.120 -0.049 1.276 sum -11.190 -2.928 -8.966 14.635 Atomic orbital electron populations 1.21824 0.95365 1.01651 1.01530 1.21153 0.95665 0.96410 0.98436 1.21919 1.01397 0.95970 1.01546 1.21370 0.93273 1.01215 0.97618 1.21736 0.97789 1.01886 0.96881 1.20623 0.82658 0.79316 0.87958 1.90649 1.55519 1.52196 1.44814 1.46010 1.06787 1.58330 1.24007 1.20223 0.99707 0.84876 0.87312 0.89657 1.19380 0.87118 0.96819 0.97998 1.21098 0.93181 0.94118 1.47456 0.92470 1.24986 0.95715 0.98050 0.95358 1.69952 0.98213 1.36077 1.48856 0.86656 0.76942 0.85334 0.79065 1.20217 1.21302 1.20260 1.20564 0.95915 0.97046 0.93553 1.20905 0.99880 0.94744 0.97138 1.21041 1.00785 0.93760 0.98748 1.20991 1.01446 0.99108 0.93846 1.21039 1.00794 0.95113 0.97136 1.21020 0.99369 0.93282 0.99059 0.92664 0.92970 0.92750 0.91350 0.93039 0.92628 0.92264 0.91441 0.91258 0.88897 0.89496 0.76542 0.95777 0.94860 0.92816 0.86586 0.86762 0.86863 0.86630 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.19 37.16 0.34 -0.99 16 2 C -0.10 -0.97 2.92 -90.62 -0.26 -1.23 16 3 C -0.15 -1.44 8.95 37.16 0.33 -1.10 16 4 C -0.10 -1.20 3.97 -26.73 -0.11 -1.31 16 5 C -0.14 -1.84 5.45 -27.88 -0.15 -1.99 16 6 C 0.51 8.90 7.79 -10.99 -0.09 8.82 16 7 O -0.55 -11.65 15.65 5.55 0.09 -11.57 16 8 N -0.70 -12.63 4.02 -54.93 -0.22 -12.85 16 9 C 0.18 3.77 2.12 -69.08 -0.15 3.62 16 10 H 0.09 1.94 7.44 -51.92 -0.39 1.55 16 11 C 0.02 0.58 4.50 -27.88 -0.13 0.46 16 12 C -0.52 -13.78 8.84 -34.44 -0.30 -14.08 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 16 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.07 -1.31 4.91 -104.63 -0.51 -1.82 16 21 C -0.11 -1.84 9.33 -39.58 -0.37 -2.21 16 22 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 23 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 24 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 25 C -0.11 -1.93 9.67 -39.59 -0.38 -2.31 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 33 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.09 1.11 6.56 -51.93 -0.34 0.77 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 6.56 8.60 -40.82 -0.35 6.21 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.12 1.83 7.71 -52.49 -0.40 1.42 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -30.74 371.66 -9.59 -40.32 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.70 Total: 6.87 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -3.07 Total: -19.51 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.52 Total: -37.71 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.74 -9.59 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153682459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.194 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds