Wall clock time and date at job start Tue Mar 31 2020 06:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47003 * 2 1 4 4 C 1.53001 * 109.47291 * 119.99536 * 2 1 3 5 5 C 1.53000 * 109.47267 * 174.99870 * 4 2 1 6 6 C 1.50697 * 109.47005 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00067 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00181 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00556 * 180.02562 * 8 6 5 10 10 H 1.09009 * 109.46624 * 324.99750 * 9 8 6 11 11 C 1.52996 * 109.47466 * 205.00158 * 9 8 6 12 12 C 1.50702 * 109.47159 * 64.99479 * 11 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.50700 * 109.47471 * 84.99708 * 9 8 6 21 21 C 1.38233 * 119.99377 * 39.72808 * 20 9 8 22 22 C 1.38237 * 119.99600 * 179.78842 * 21 20 9 23 23 C 1.38241 * 119.99990 * 0.44354 * 22 21 20 24 24 C 1.38237 * 119.99716 * 359.81238 * 23 22 21 25 25 C 1.38228 * 120.00326 * 220.00479 * 20 9 8 26 26 H 1.08997 * 109.47529 * 300.00325 * 1 2 3 27 27 H 1.09006 * 109.46612 * 60.00246 * 1 2 3 28 28 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47460 * 240.00048 * 2 1 3 30 30 H 1.08997 * 109.47260 * 299.99664 * 3 2 1 31 31 H 1.08997 * 109.47244 * 59.99501 * 3 2 1 32 32 H 1.09004 * 109.47063 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46697 * 55.00403 * 4 2 1 34 34 H 1.09000 * 109.47045 * 295.00705 * 4 2 1 35 35 H 1.09003 * 109.46827 * 60.00613 * 5 4 2 36 36 H 1.08995 * 109.47370 * 300.00619 * 5 4 2 37 37 H 0.97002 * 120.00072 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.47066 * 304.99682 * 11 9 8 39 39 H 1.08994 * 109.47405 * 184.99512 * 11 9 8 40 40 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 41 41 H 1.07995 * 120.00514 * 359.97438 * 21 20 9 42 42 H 1.08001 * 120.00058 * 180.28006 * 22 21 20 43 43 H 1.07995 * 120.00194 * 179.83256 * 23 22 21 44 44 H 1.08001 * 119.99824 * 180.02562 * 24 23 22 45 45 H 1.08005 * 119.99906 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.8310 1.1880 6 6 4.0671 -1.5418 2.4182 7 8 3.2826 -1.9235 3.2608 8 7 5.3880 -1.7535 2.5822 9 6 5.8763 -2.4450 3.7778 10 1 5.2548 -2.1764 4.6321 11 6 7.3240 -2.0319 4.0504 12 6 7.3721 -0.5647 4.3909 13 1 6.4612 0.0152 4.4112 14 6 8.5784 0.0362 4.6825 15 7 9.6876 -0.6700 4.6582 16 14 8.6370 1.8531 5.1120 17 1 7.8104 2.1032 6.3201 18 1 10.0417 2.2530 5.3813 19 1 8.1059 2.6479 3.9755 20 6 5.8117 -3.9345 3.5582 21 6 6.1532 -4.4673 2.3293 22 6 6.0982 -5.8340 2.1291 23 6 5.6930 -6.6671 3.1552 24 6 5.3464 -6.1337 4.3826 25 6 5.4056 -4.7674 4.5839 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6054 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 3.9995 0.1676 1.1421 36 1 3.8532 -1.3939 0.3003 37 1 6.0154 -1.4486 1.9081 38 1 7.9285 -2.2190 3.1629 39 1 7.7161 -2.6118 4.8859 40 1 10.5363 -0.2472 4.8630 41 1 6.4658 -3.8162 1.5264 42 1 6.3693 -6.2507 1.1704 43 1 5.6474 -7.7346 2.9981 44 1 5.0302 -6.7845 5.1843 45 1 5.1349 -4.3507 5.5429 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153682459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:50 Heat of formation + Delta-G solvation = -66.389991 kcal Electronic energy + Delta-G solvation = -22908.795692 eV Core-core repulsion = 19695.905418 eV Total energy + Delta-G solvation = -3212.890274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07745 -39.78766 -37.55734 -36.66737 -34.71521 -32.88231 -31.74663 -31.37491 -30.49250 -27.96989 -26.92101 -25.18974 -23.78734 -23.34796 -21.67961 -21.08026 -20.71797 -18.70438 -17.91120 -17.66078 -17.03590 -16.60264 -16.43488 -16.11531 -15.55996 -15.36505 -14.95551 -14.63873 -14.41084 -14.33335 -14.19093 -13.91755 -13.68187 -13.46043 -13.45342 -13.03608 -12.91300 -12.67923 -12.57699 -12.45330 -12.20071 -12.14620 -11.87923 -11.65722 -11.57975 -11.48503 -11.41738 -11.34356 -10.77937 -10.55551 -9.93956 -9.75829 -9.51880 -8.20700 -6.31172 0.51096 0.55456 1.39750 1.41575 1.49476 1.80224 2.39574 2.41980 2.97732 3.13546 3.83023 3.92584 3.97908 4.03115 4.04067 4.20495 4.24771 4.31914 4.39466 4.47330 4.59673 4.65849 4.69722 4.77300 4.78725 4.83380 4.89751 4.99415 5.08692 5.12582 5.17416 5.19792 5.23252 5.29317 5.35126 5.42607 5.51491 5.56626 5.60822 5.62555 5.64070 5.77265 5.92323 6.15672 6.20197 6.76609 6.81160 7.37536 7.43285 8.89884 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.008427 B = 0.005957 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.819528 B = 4699.368042 C = 7486.778117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.093 4.093 5 C -0.133 4.133 6 C 0.503 3.497 7 O -0.594 6.594 8 N -0.699 5.699 9 C 0.199 3.801 10 H 0.053 0.947 11 C 0.038 3.962 12 C -0.530 4.530 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.956 3.044 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.264 1.264 20 C -0.097 4.097 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.136 4.136 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.409 0.591 38 H 0.013 0.987 39 H 0.000 1.000 40 H 0.264 0.736 41 H 0.123 0.877 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.143 0.857 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.995 -4.101 -11.710 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.209 4.209 4 C -0.131 4.131 5 C -0.172 4.172 6 C 0.292 3.708 7 O -0.475 6.475 8 N -0.348 5.348 9 C 0.093 3.907 10 H 0.071 0.929 11 C 0.001 3.999 12 C -0.568 4.568 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.781 3.219 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.098 4.098 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.154 4.154 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.244 0.756 38 H 0.031 0.969 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.166 0.834 43 H 0.169 0.831 44 H 0.161 0.839 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.345 -4.338 -11.088 17.152 hybrid contribution 0.765 1.120 0.646 1.503 sum -11.580 -3.217 -10.442 15.921 Atomic orbital electron populations 1.21830 0.94796 1.01806 1.01976 1.21119 0.96144 0.96441 0.97326 1.21930 1.01431 0.95651 1.01885 1.21332 0.92897 1.00564 0.98283 1.21778 0.97940 1.02265 0.95226 1.21478 0.81823 0.78644 0.88883 1.90627 1.56328 1.53898 1.46647 1.45938 1.07463 1.58205 1.23230 1.19685 0.96523 0.86947 0.87510 0.92892 1.19120 0.89324 0.95405 0.96046 1.21361 0.93055 0.95202 1.47216 0.92903 1.25782 0.95322 1.02422 0.95187 1.70068 0.98755 1.37925 1.49836 0.85638 0.77022 0.80196 0.79005 1.20220 1.20824 1.18854 1.20459 0.98479 0.95743 0.95160 1.21081 1.00176 0.96247 0.96442 1.21456 0.99506 0.92776 1.00414 1.21475 0.99381 1.01040 0.92868 1.21381 0.99991 0.94134 0.98684 1.21170 1.00720 0.94855 0.98692 0.93347 0.91409 0.92789 0.89881 0.91539 0.93497 0.92205 0.92705 0.93402 0.87441 0.86547 0.75562 0.96893 0.98126 0.92698 0.85935 0.83434 0.83061 0.83934 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.19 71.98 0.66 -1.76 16 2 C -0.09 -1.64 2.92 -10.79 -0.03 -1.67 16 3 C -0.15 -2.57 8.95 71.98 0.64 -1.93 16 4 C -0.09 -2.25 3.97 30.59 0.12 -2.12 16 5 C -0.13 -3.26 5.45 29.85 0.16 -3.09 16 6 C 0.50 17.90 7.79 87.66 0.68 18.58 16 7 O -0.59 -26.01 15.65 -3.06 -0.05 -26.06 16 8 N -0.70 -25.76 4.02 -446.09 -1.79 -27.56 16 9 C 0.20 8.63 2.12 44.24 0.09 8.72 16 10 H 0.05 2.60 7.44 -2.38 -0.02 2.58 16 11 C 0.04 1.95 4.50 29.85 0.13 2.09 16 12 C -0.53 -28.95 8.84 25.60 0.23 -28.72 16 13 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 14 C 0.01 0.64 5.46 84.66 0.46 1.11 16 15 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16 16 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 20 C -0.10 -3.79 4.91 -19.87 -0.10 -3.89 16 21 C -0.12 -4.06 9.33 22.27 0.21 -3.85 16 22 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 23 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 24 C -0.12 -3.65 10.05 22.27 0.22 -3.42 16 25 C -0.14 -4.99 9.67 22.27 0.22 -4.77 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 1.00 6.56 -2.39 -0.02 0.98 16 33 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 34 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 35 H 0.11 2.38 6.56 -2.39 -0.02 2.36 16 36 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.41 13.48 8.60 -92.71 -0.80 12.68 16 38 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 41 H 0.12 3.80 7.71 -2.91 -0.02 3.78 16 42 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 44 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 45 H 0.11 4.06 8.04 -2.91 -0.02 4.04 16 Total: -1.00 -68.79 371.66 4.78 -64.01 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.15 Total: 29.18 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 4.15 Total: -31.04 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -1.51 Total: -81.46 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -68.79 4.78 -64.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153682459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.379 kcal (2) G-P(sol) polarization free energy of solvation -68.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds