Wall clock time and date at job start Tue Mar 31 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38282 * 119.97337 * 2 1 4 4 C 1.38254 * 120.11059 * 179.72568 * 3 2 1 5 5 C 1.38165 * 120.05386 * 0.54199 * 4 3 2 6 6 C 1.38714 * 119.94439 * 359.72964 * 5 4 3 7 7 O 1.35901 * 120.05751 * 179.97438 * 6 5 4 8 8 C 1.42900 * 116.99694 * 0.02562 * 7 6 5 9 9 C 1.52997 * 109.46830 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47384 * 64.99997 * 9 8 7 11 11 C 1.36938 * 120.00120 * 269.99964 * 10 9 8 12 12 H 1.08003 * 119.99841 * 141.52050 * 11 10 9 13 13 C 1.38806 * 119.99763 * 321.51479 * 11 10 9 14 14 N 1.31615 * 120.00347 * 339.37396 * 13 11 10 15 15 Si 1.86806 * 119.99825 * 159.37484 * 13 11 10 16 16 H 1.48501 * 109.47035 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46879 * 119.99990 * 15 13 11 18 18 H 1.48496 * 109.47182 * 240.00068 * 15 13 11 19 19 C 1.46503 * 119.99870 * 89.99922 * 10 9 8 20 20 C 1.54265 * 110.03369 * 242.54399 * 19 10 9 21 21 C 1.54965 * 104.16167 * 217.13982 * 20 19 10 22 22 C 1.54890 * 102.77811 * 37.88360 * 21 20 19 23 23 C 1.53881 * 110.03461 * 125.32658 * 19 10 9 24 24 C 1.38119 * 119.96936 * 180.26722 * 2 1 3 25 25 H 1.08998 * 109.47167 * 269.73149 * 1 2 3 26 26 H 1.09005 * 109.46682 * 29.72737 * 1 2 3 27 27 H 1.08998 * 109.47568 * 149.72707 * 1 2 3 28 28 H 1.08001 * 119.94746 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.97010 * 180.25114 * 4 3 2 30 30 H 1.08000 * 120.03158 * 179.75076 * 5 4 3 31 31 H 1.08998 * 109.47396 * 299.99906 * 8 7 6 32 32 H 1.08998 * 109.47252 * 60.00400 * 8 7 6 33 33 H 1.09008 * 109.47081 * 184.99914 * 9 8 7 34 34 H 1.08997 * 109.47254 * 304.99566 * 9 8 7 35 35 H 0.97005 * 120.00170 * 175.02999 * 14 13 11 36 36 H 1.08999 * 110.02081 * 3.93847 * 19 10 9 37 37 H 1.08998 * 110.48510 * 335.78255 * 20 19 10 38 38 H 1.08996 * 110.49041 * 98.42559 * 20 19 10 39 39 H 1.09002 * 110.71657 * 279.57161 * 21 20 19 40 40 H 1.08999 * 110.92732 * 156.29799 * 21 20 19 41 41 H 1.09000 * 110.48672 * 203.40515 * 22 21 20 42 42 H 1.09000 * 110.59609 * 80.82436 * 22 21 20 43 43 H 1.08992 * 110.03153 * 238.56970 * 23 19 10 44 44 H 1.09005 * 110.02808 * 359.97438 * 23 19 10 45 45 H 1.08007 * 120.03237 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 0.0057 5 6 4.2752 0.0070 0.0002 6 6 3.5845 -1.1959 -0.0055 7 8 4.2657 -2.3719 -0.0115 8 6 5.6926 -2.2951 -0.0111 9 6 6.2794 -3.7080 -0.0190 10 7 5.9276 -4.3759 -1.2745 11 6 4.7706 -5.1031 -1.3624 12 1 4.1824 -5.0745 -2.2678 13 6 4.3539 -5.8769 -0.2881 14 7 5.2193 -6.2452 0.6326 15 14 2.5647 -6.3957 -0.1490 16 1 1.8019 -5.8568 -1.3035 17 1 2.4779 -7.8781 -0.1474 18 1 1.9922 -5.8650 1.1143 19 6 6.8137 -4.2659 -2.4359 20 6 6.0824 -3.5545 -3.5930 21 6 6.5822 -4.2863 -4.8643 22 6 6.6719 -5.7606 -4.3980 23 6 7.1889 -5.6678 -2.9475 24 6 2.1970 -1.1965 -0.0056 25 1 -0.3633 -0.0048 1.0276 26 1 -0.3633 0.8925 -0.5096 27 1 -0.3634 -0.8875 -0.5180 28 1 1.6566 2.1324 -0.0004 29 1 4.1176 2.1380 0.0098 30 1 5.3552 0.0100 0.0006 31 1 6.0279 -1.7579 -0.8983 32 1 6.0278 -1.7671 0.8817 33 1 7.3643 -3.6515 0.0709 34 1 5.8744 -4.2743 0.8197 35 1 4.9158 -6.7241 1.4198 36 1 7.7140 -3.7132 -2.1674 37 1 5.0033 -3.6663 -3.4883 38 1 6.3562 -2.5000 -3.6264 39 1 7.5628 -3.9151 -5.1625 40 1 5.8670 -4.1819 -5.6801 41 1 7.3755 -6.3150 -5.0190 42 1 5.6891 -6.2313 -4.4234 43 1 8.2711 -5.7951 -2.9280 44 1 6.7119 -6.4301 -2.3313 45 1 1.6570 -2.1319 -0.0095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156699207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:52 Heat of formation + Delta-G solvation = -20.623566 kcal Electronic energy + Delta-G solvation = -23805.538136 eV Core-core repulsion = 20594.632444 eV Total energy + Delta-G solvation = -3210.905692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94904 -39.39944 -38.38907 -35.98798 -33.37076 -33.15423 -31.45274 -29.88905 -29.31186 -28.12985 -27.78356 -25.61306 -23.40720 -23.17384 -21.58576 -21.30471 -20.70289 -18.64954 -18.25419 -17.14439 -16.86015 -16.76387 -16.55411 -16.20931 -15.95124 -15.14027 -14.90935 -14.74988 -14.41870 -14.19869 -14.11663 -14.02463 -13.51103 -13.28030 -12.94600 -12.85999 -12.84204 -12.66098 -12.37135 -12.20014 -12.11047 -11.94792 -11.84672 -11.76004 -11.72688 -11.55849 -11.36997 -11.22127 -11.11967 -10.40365 -9.69926 -8.99170 -8.48478 -7.70895 -5.35136 0.41091 0.59286 1.39410 1.44263 1.51625 2.52733 2.57881 2.86702 3.34050 3.61199 3.94002 3.96716 3.99260 4.04750 4.21510 4.25247 4.30421 4.42431 4.49209 4.55704 4.62610 4.67392 4.69401 4.77426 4.81094 4.83974 4.91576 4.94660 4.97434 4.99840 5.07416 5.23259 5.24132 5.25755 5.34421 5.48365 5.55377 5.59407 5.63588 5.67535 5.68402 5.72372 5.86388 6.01169 6.55211 6.78216 7.27150 7.96684 8.46169 9.21218 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.005758 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.334375 B = 4861.669010 C = 5786.666914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.052 4.052 3 C -0.171 4.171 4 C -0.074 4.074 5 C -0.231 4.231 6 C 0.116 3.884 7 O -0.312 6.312 8 C 0.057 3.943 9 C 0.140 3.860 10 N -0.583 5.583 11 C -0.210 4.210 12 H 0.041 0.959 13 C -0.027 4.027 14 N -0.916 5.916 15 Si 0.929 3.071 16 H -0.276 1.276 17 H -0.294 1.294 18 H -0.296 1.296 19 C 0.160 3.840 20 C -0.129 4.129 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.128 4.128 24 C -0.191 4.191 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.132 0.868 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.245 0.755 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.040 0.960 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 14.229 -4.253 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.052 4.052 3 C -0.189 4.189 4 C -0.092 4.092 5 C -0.250 4.250 6 C 0.069 3.931 7 O -0.225 6.225 8 C -0.021 4.021 9 C 0.013 3.987 10 N -0.303 5.303 11 C -0.341 4.341 12 H 0.059 0.941 13 C -0.223 4.223 14 N -0.562 5.562 15 Si 0.760 3.240 16 H -0.201 1.201 17 H -0.222 1.222 18 H -0.223 1.223 19 C 0.054 3.946 20 C -0.168 4.168 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.167 4.167 24 C -0.210 4.210 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.170 0.830 29 H 0.171 0.829 30 H 0.150 0.850 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.838 13.852 -4.154 14.486 hybrid contribution -0.799 -0.788 0.589 1.267 sum -1.637 13.065 -3.566 13.641 Atomic orbital electron populations 1.20856 0.89015 1.03673 1.03291 1.20025 0.97423 0.91748 0.96019 1.21225 0.94278 0.97877 1.05482 1.21280 0.94578 0.97565 0.95762 1.21424 1.00760 0.92213 1.10573 1.19628 0.92579 0.86180 0.94666 1.86374 1.21352 1.27533 1.87239 1.23656 0.77692 1.01213 0.99506 1.20994 0.96198 0.89391 0.92110 1.43994 1.22040 1.55888 1.08348 1.18699 0.98047 1.17168 1.00181 0.94123 1.25436 0.99439 0.97278 1.00190 1.70129 1.32685 1.41606 1.11806 0.85798 0.84127 0.76862 0.77242 1.20050 1.22155 1.22323 1.21325 0.91665 0.94042 0.87582 1.22725 0.99746 0.98570 0.95756 1.22399 1.01344 0.94665 0.96425 1.22216 1.00087 0.97222 0.95638 1.22445 0.99085 0.98861 0.96290 1.20461 0.91524 0.98994 1.10017 0.89996 0.89057 0.92014 0.83023 0.82909 0.84974 0.92902 0.92263 0.91826 0.91493 0.94594 0.91963 0.94143 0.92268 0.90036 0.91577 0.90721 0.93975 0.92330 0.94126 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 10.01 71.24 0.71 -1.63 16 2 C -0.05 -1.47 5.88 -19.88 -0.12 -1.58 16 3 C -0.17 -4.08 9.70 22.28 0.22 -3.87 16 4 C -0.07 -1.84 10.04 22.26 0.22 -1.61 16 5 C -0.23 -7.22 9.04 22.37 0.20 -7.02 16 6 C 0.12 4.50 6.69 22.51 0.15 4.65 16 7 O -0.31 -14.19 9.61 -92.44 -0.89 -15.08 16 8 C 0.06 2.23 5.08 71.98 0.37 2.60 16 9 C 0.14 6.38 5.71 86.38 0.49 6.87 16 10 N -0.58 -28.04 2.36 -674.01 -1.59 -29.63 16 11 C -0.21 -11.47 7.26 84.03 0.61 -10.86 16 12 H 0.04 2.34 6.94 -2.91 -0.02 2.32 16 13 C -0.03 -1.55 4.97 84.86 0.42 -1.13 16 14 N -0.92 -54.04 11.48 21.65 0.25 -53.79 16 15 Si 0.93 47.27 29.60 68.60 2.03 49.30 16 16 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 17 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 18 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16 19 C 0.16 6.44 3.42 45.72 0.16 6.60 16 20 C -0.13 -4.66 6.43 31.70 0.20 -4.46 16 21 C -0.11 -3.26 6.91 31.91 0.22 -3.04 16 22 C -0.11 -3.78 6.83 31.67 0.22 -3.57 16 23 C -0.13 -5.03 6.25 31.32 0.20 -4.83 16 24 C -0.19 -7.02 9.64 22.37 0.22 -6.80 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.43 8.08 -2.38 -0.02 1.41 16 27 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 28 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 29 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.13 3.76 6.30 -2.91 -0.02 3.74 16 31 H 0.05 1.94 7.66 -2.39 -0.02 1.92 16 32 H 0.06 2.04 7.66 -2.39 -0.02 2.03 16 33 H 0.06 2.61 7.90 -2.38 -0.02 2.59 16 34 H 0.07 3.61 5.55 -2.39 -0.01 3.60 16 35 H 0.24 14.17 8.32 -92.70 -0.77 13.40 16 36 H 0.06 2.28 7.81 -2.39 -0.02 2.26 16 37 H 0.04 1.73 6.64 -2.39 -0.02 1.72 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.04 1.98 7.17 -2.38 -0.02 1.96 16 45 H 0.10 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -65.46 357.50 5.23 -60.23 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.95 Total: 18.64 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 4.49 Total: -29.68 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -1.34 Total: -83.42 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.89 Total: -15.08 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -65.46 5.23 -60.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156699207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.605 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds