Wall clock time and date at job start Tue Mar 31 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38271 * 119.94115 * 2 1 4 4 C 1.38145 * 120.05092 * 180.25901 * 3 2 1 5 5 C 1.38738 * 119.94465 * 359.46758 * 4 3 2 6 6 O 1.35891 * 120.05552 * 180.29972 * 5 4 3 7 7 C 1.42900 * 117.00170 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47388 * 180.02562 * 7 6 5 9 9 N 1.46492 * 109.47255 * 64.99628 * 8 7 6 10 10 C 1.36938 * 120.00118 * 270.00141 * 9 8 7 11 11 H 1.08001 * 120.00297 * 141.51462 * 10 9 8 12 12 C 1.38816 * 120.00093 * 321.51111 * 10 9 8 13 13 N 1.31627 * 119.99598 * 339.40222 * 12 10 9 14 14 Si 1.86796 * 120.00408 * 159.40230 * 12 10 9 15 15 H 1.48502 * 109.47112 * 59.99600 * 14 12 10 16 16 H 1.48497 * 109.47460 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47093 * 300.00193 * 14 12 10 18 18 C 1.46505 * 120.00110 * 90.00256 * 9 8 7 19 19 C 1.54266 * 110.03293 * 242.53873 * 18 9 8 20 20 C 1.54963 * 104.16185 * 217.13521 * 19 18 9 21 21 C 1.54889 * 102.77397 * 37.88915 * 20 19 18 22 22 C 1.53878 * 110.03123 * 125.32126 * 18 9 8 23 23 C 1.38730 * 119.88704 * 0.27831 * 5 4 3 24 24 C 1.38142 * 119.94816 * 0.02562 * 23 5 4 25 25 H 1.09003 * 109.47149 * 270.25070 * 1 2 3 26 26 H 1.08999 * 109.47250 * 30.25200 * 1 2 3 27 27 H 1.08994 * 109.47705 * 150.25298 * 1 2 3 28 28 H 1.07996 * 119.97363 * 0.02861 * 3 2 1 29 29 H 1.08002 * 120.02805 * 179.74787 * 4 3 2 30 30 H 1.09008 * 109.46918 * 299.99877 * 7 6 5 31 31 H 1.09001 * 109.47496 * 59.99757 * 7 6 5 32 32 H 1.09004 * 109.46836 * 185.00113 * 8 7 6 33 33 H 1.09004 * 109.46497 * 304.99665 * 8 7 6 34 34 H 0.97001 * 119.99728 * 175.02531 * 13 12 10 35 35 H 1.09002 * 110.01242 * 3.93154 * 18 9 8 36 36 H 1.09002 * 110.48585 * 335.78338 * 19 18 9 37 37 H 1.09001 * 110.48205 * 98.42385 * 19 18 9 38 38 H 1.08994 * 110.71940 * 279.57521 * 20 19 18 39 39 H 1.09000 * 110.92080 * 156.29683 * 20 19 18 40 40 H 1.09007 * 110.48563 * 203.40580 * 21 20 19 41 41 H 1.09006 * 110.59945 * 80.81777 * 21 20 19 42 42 H 1.08999 * 110.03168 * 238.57045 * 22 18 9 43 43 H 1.08999 * 110.03312 * 0.02562 * 22 18 9 44 44 H 1.07999 * 120.02936 * 180.02562 * 23 5 4 45 45 H 1.08001 * 119.97833 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5786 1.2008 -0.0054 5 6 4.2734 0.0000 0.0003 6 8 5.6323 0.0000 0.0012 7 6 6.2811 -1.2732 0.0066 8 6 7.7980 -1.0727 0.0075 9 7 8.2043 -0.4253 1.2571 10 6 8.2539 0.9409 1.3358 11 1 7.9378 1.4417 2.2390 12 6 8.7107 1.6823 0.2548 13 7 9.4594 1.1117 -0.6652 14 14 8.2630 3.4897 0.1057 15 1 8.7767 4.2261 1.2885 16 1 8.8696 4.0498 -1.1286 17 1 6.7862 3.6299 0.0385 18 6 8.5577 -1.2395 2.4227 19 6 7.5800 -0.9554 3.5817 20 6 8.4686 -1.0128 4.8500 21 6 9.7875 -0.3545 4.3742 22 6 9.9608 -0.8580 2.9263 23 6 3.5786 -1.2007 0.0056 24 6 2.1972 -1.1981 0.0047 25 1 -0.3633 0.0045 1.0277 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6558 2.1326 0.0005 29 1 4.1172 2.1369 -0.0095 30 1 5.9877 -1.8267 0.8987 31 1 5.9889 -1.8338 -0.8813 32 1 8.2924 -2.0404 -0.0780 33 1 8.0817 -0.4440 -0.8365 34 1 9.7186 1.6091 -1.4566 35 1 8.5296 -2.2973 2.1613 36 1 7.1354 0.0338 3.4720 37 1 6.8049 -1.7206 3.6231 38 1 8.6400 -2.0452 5.1544 39 1 8.0229 -0.4406 5.6637 40 1 10.6223 -0.6814 4.9942 41 1 9.7022 0.7320 4.3926 42 1 10.6134 -1.7309 2.9101 43 1 10.3786 -0.0668 2.3038 44 1 4.1172 -2.1368 0.0105 45 1 1.6557 -2.1326 0.0084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156719671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:55 Heat of formation + Delta-G solvation = -20.254421 kcal Electronic energy + Delta-G solvation = -23718.086984 eV Core-core repulsion = 20507.197299 eV Total energy + Delta-G solvation = -3210.889685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94512 -39.39773 -38.41002 -35.99292 -33.29934 -32.63551 -31.92754 -30.40700 -29.31212 -28.10288 -27.04742 -25.66636 -23.89774 -22.61421 -21.79152 -21.33172 -20.71241 -19.03227 -18.23934 -17.07051 -16.85166 -16.54881 -16.23067 -16.16273 -15.95338 -15.23189 -14.88158 -14.76434 -14.39006 -14.35754 -14.19846 -14.03392 -13.51629 -13.29660 -12.93769 -12.82118 -12.79297 -12.61309 -12.35540 -12.21816 -12.09696 -11.94589 -11.81194 -11.75137 -11.72074 -11.52561 -11.32824 -11.21819 -11.11484 -10.38594 -9.92504 -8.84964 -8.47498 -7.70124 -5.34284 0.42493 0.55301 1.41608 1.45558 1.51624 2.54529 2.59722 2.85466 3.34884 3.61806 3.90946 3.99227 4.00776 4.04670 4.12886 4.25303 4.28796 4.48508 4.49718 4.55363 4.64538 4.67843 4.71484 4.77520 4.86452 4.91562 4.92867 4.94811 4.97521 5.01155 5.14399 5.21310 5.23472 5.24942 5.34451 5.43078 5.52151 5.59482 5.63690 5.67833 5.71240 5.72554 5.86670 6.01037 6.55722 6.78816 7.27934 7.97420 8.47033 9.21948 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.005433 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.127089 B = 5152.473926 C = 6138.602918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.140 4.140 3 C -0.082 4.082 4 C -0.182 4.182 5 C 0.106 3.894 6 O -0.312 6.312 7 C 0.056 3.944 8 C 0.140 3.860 9 N -0.583 5.583 10 C -0.212 4.212 11 H 0.041 0.959 12 C -0.027 4.027 13 N -0.916 5.916 14 Si 0.930 3.070 15 H -0.280 1.280 16 H -0.296 1.296 17 H -0.288 1.288 18 C 0.161 3.839 19 C -0.129 4.129 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.218 4.218 24 C -0.081 4.081 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.145 0.855 29 H 0.106 0.894 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.245 0.755 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.058 0.942 43 H 0.040 0.960 44 H 0.134 0.866 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.015 -7.369 4.331 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.140 4.140 3 C -0.100 4.100 4 C -0.201 4.201 5 C 0.060 3.940 6 O -0.225 6.225 7 C -0.021 4.021 8 C 0.014 3.986 9 N -0.303 5.303 10 C -0.343 4.343 11 H 0.058 0.942 12 C -0.223 4.223 13 N -0.562 5.562 14 Si 0.760 3.240 15 H -0.206 1.206 16 H -0.222 1.222 17 H -0.215 1.215 18 C 0.054 3.946 19 C -0.168 4.168 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.167 4.167 23 C -0.237 4.237 24 C -0.098 4.098 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.163 0.837 29 H 0.124 0.876 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.151 0.849 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.713 -7.132 4.214 15.174 hybrid contribution 0.280 1.184 -0.550 1.335 sum -12.434 -5.948 3.664 14.262 Atomic orbital electron populations 1.20716 0.88602 1.03575 1.02881 1.20165 0.97856 0.92390 1.03636 1.21063 0.91798 0.99273 0.97863 1.20585 0.95104 0.95975 1.08425 1.19627 0.83696 0.95117 0.95546 1.86379 1.15591 1.33187 1.87328 1.23657 0.96011 0.82956 0.99481 1.20988 0.88643 0.96765 0.92241 1.43988 1.75922 1.01848 1.08540 1.18624 1.32845 0.82742 1.00086 0.94168 1.25449 0.97128 0.99602 1.00144 1.70124 1.36490 1.38073 1.11504 0.85931 0.77798 0.83683 0.76606 1.20607 1.22218 1.21465 1.21318 0.92275 0.93443 0.87524 1.22730 0.98075 1.00270 0.95747 1.22397 0.94980 1.01019 0.96435 1.22217 0.98131 0.99158 0.95643 1.22450 0.98123 0.99824 0.96321 1.21419 0.96207 0.96637 1.09391 1.21149 0.92582 0.98919 0.97184 0.90649 0.90906 0.90458 0.83693 0.87598 0.92945 0.92272 0.91873 0.91489 0.94590 0.91997 0.94093 0.92271 0.90042 0.91569 0.90738 0.94013 0.92327 0.94126 0.84853 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 10.01 71.24 0.71 -0.90 16 2 C -0.14 -3.42 5.88 -19.85 -0.12 -3.54 16 3 C -0.08 -2.32 9.69 22.26 0.22 -2.11 16 4 C -0.18 -6.68 9.99 22.37 0.22 -6.45 16 5 C 0.11 4.13 6.69 22.51 0.15 4.28 16 6 O -0.31 -14.18 9.61 -92.32 -0.89 -15.06 16 7 C 0.06 2.21 5.08 71.98 0.37 2.58 16 8 C 0.14 6.39 5.71 86.38 0.49 6.89 16 9 N -0.58 -28.04 2.36 -674.00 -1.59 -29.63 16 10 C -0.21 -11.56 7.26 84.03 0.61 -10.95 16 11 H 0.04 2.30 6.94 -2.91 -0.02 2.28 16 12 C -0.03 -1.53 4.97 84.86 0.42 -1.11 16 13 N -0.92 -53.94 11.48 21.65 0.25 -53.69 16 14 Si 0.93 47.10 29.60 68.60 2.03 49.13 16 15 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 17 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 18 C 0.16 6.46 3.42 45.72 0.16 6.62 16 19 C -0.13 -4.66 6.43 31.69 0.20 -4.46 16 20 C -0.11 -3.26 6.91 31.91 0.22 -3.04 16 21 C -0.11 -3.78 6.83 31.67 0.22 -3.57 16 22 C -0.13 -5.05 6.25 31.32 0.20 -4.85 16 23 C -0.22 -6.82 9.04 22.36 0.20 -6.62 16 24 C -0.08 -2.04 9.69 22.25 0.22 -1.82 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 27 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 28 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 30 H 0.05 1.92 7.66 -2.38 -0.02 1.90 16 31 H 0.06 2.04 7.66 -2.39 -0.02 2.02 16 32 H 0.06 2.59 7.90 -2.39 -0.02 2.57 16 33 H 0.07 3.61 5.55 -2.38 -0.01 3.60 16 34 H 0.24 14.22 8.32 -92.71 -0.77 13.45 16 35 H 0.06 2.27 7.81 -2.39 -0.02 2.25 16 36 H 0.04 1.75 6.64 -2.39 -0.02 1.73 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.04 1.98 7.17 -2.39 -0.02 1.96 16 44 H 0.13 3.79 6.30 -2.91 -0.02 3.77 16 45 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -64.90 357.50 5.23 -59.67 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.95 Total: 18.64 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 4.49 Total: -29.05 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -1.34 Total: -83.32 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.89 Total: -15.06 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -64.90 5.23 -59.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156719671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.415 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds