Wall clock time and date at job start Tue Mar 31 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 11 11 C 1.50704 * 109.46855 * 185.00302 * 10 7 6 12 12 O 1.21277 * 120.00348 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.46500 * 120.00223 * 359.97438 * 13 11 10 15 15 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 16 16 C 1.50699 * 109.47466 * 90.00095 * 15 13 11 17 17 H 1.08009 * 119.99452 * 359.97438 * 16 15 13 18 18 C 1.37873 * 120.00539 * 179.97438 * 16 15 13 19 19 N 1.31520 * 119.99553 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00262 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46734 * 90.00197 * 20 18 16 22 22 H 1.48497 * 109.47369 * 209.99928 * 20 18 16 23 23 H 1.48499 * 109.47154 * 330.00132 * 20 18 16 24 24 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 25 25 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 33 33 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 34 34 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 35 35 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 36 36 H 1.08999 * 109.46955 * 304.99332 * 10 7 6 37 37 H 1.08993 * 109.47689 * 64.99776 * 10 7 6 38 38 H 1.08995 * 109.47253 * 89.99700 * 14 13 11 39 39 H 1.09000 * 109.47445 * 210.00561 * 14 13 11 40 40 H 1.09008 * 109.47062 * 330.00177 * 14 13 11 41 41 H 1.09013 * 109.46871 * 209.99609 * 15 13 11 42 42 H 1.08997 * 109.47349 * 329.99257 * 15 13 11 43 43 H 0.97005 * 119.99801 * 179.97438 * 19 18 16 44 44 H 1.08002 * 120.00166 * 179.97438 * 24 6 5 45 45 H 1.07996 * 120.00605 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.8036 5.5137 -0.7205 11 6 5.3631 6.9090 -0.6140 12 8 4.7442 7.7669 -0.0208 13 7 6.5512 7.2035 -1.1781 14 6 7.2991 6.1671 -1.8942 15 6 7.0947 8.5600 -1.0750 16 6 7.9420 8.6688 0.1664 17 1 8.0632 7.8131 0.8142 18 6 8.5626 9.8606 0.4753 19 7 8.4154 10.9025 -0.3137 20 14 9.6123 9.9956 2.0146 21 1 11.0158 9.6354 1.6896 22 1 9.5646 11.3890 2.5257 23 1 9.0911 9.0697 3.0520 24 6 2.7234 3.3758 1.1971 25 6 2.2627 2.0725 1.1971 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0926 1.5598 -2.1325 32 1 2.9045 3.8845 -2.1325 33 1 2.8103 7.3727 -0.7227 34 1 2.3273 6.0019 -1.7499 35 1 1.4869 6.2984 -0.2090 36 1 5.4959 4.8087 -0.2603 37 1 4.6673 5.2560 -1.7707 38 1 7.0065 6.1678 -2.9441 39 1 8.3672 6.3692 -1.8144 40 1 7.0799 5.1931 -1.4566 41 1 7.7058 8.7741 -1.9520 42 1 6.2752 9.2766 -1.0196 43 1 8.8517 11.7411 -0.0962 44 1 2.9031 3.8851 2.1324 45 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157043042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:47 Heat of formation + Delta-G solvation = -36.049438 kcal Electronic energy + Delta-G solvation = -22560.699835 eV Core-core repulsion = 19349.125227 eV Total energy + Delta-G solvation = -3211.574609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.93341 -38.87615 -35.82899 -34.70619 -33.05376 -32.54667 -30.97133 -29.12003 -28.22080 -27.02206 -25.55548 -24.38119 -22.86375 -22.80168 -21.49449 -19.94925 -18.22031 -16.78494 -16.52160 -15.84298 -15.75961 -15.15859 -14.98131 -14.86862 -14.28401 -13.92110 -13.88685 -13.64146 -13.40151 -13.15572 -12.91240 -12.60282 -12.43830 -12.16041 -12.02083 -11.81141 -11.73595 -11.52557 -11.31010 -11.20623 -11.06202 -10.92004 -10.84804 -10.62849 -10.55533 -10.44766 -10.13848 -9.59464 -8.95262 -8.80132 -8.50209 -8.42108 -7.59512 -6.02873 -4.07486 1.29771 1.37242 3.30740 3.37220 3.41009 3.49964 3.68815 4.02991 4.45840 4.57063 4.64997 4.85095 4.90164 4.96568 5.10704 5.17622 5.28342 5.30229 5.32223 5.39071 5.44751 5.47657 5.60207 5.62893 5.72071 5.77376 5.81914 5.89920 5.91399 5.98358 6.04878 6.06513 6.19802 6.25185 6.33906 6.40726 6.54106 6.66285 6.75122 6.98626 7.08931 7.46823 7.57941 7.93856 8.25574 8.46656 8.92526 9.14922 9.57640 11.05148 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029445 B = 0.002945 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.695871 B = 9504.423779 C = 9697.232378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.071 4.071 7 C -0.037 4.037 8 H 0.086 0.914 9 C -0.147 4.147 10 C -0.131 4.131 11 C 0.504 3.496 12 O -0.540 6.540 13 N -0.605 5.605 14 C 0.084 3.916 15 C 0.245 3.755 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.114 4.114 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.031 0.969 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.122 0.878 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.390 -20.834 -2.617 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.136 4.136 5 C -0.130 4.130 6 C -0.071 4.071 7 C -0.056 4.056 8 H 0.104 0.896 9 C -0.204 4.204 10 C -0.171 4.171 11 C 0.291 3.709 12 O -0.418 6.418 13 N -0.337 5.337 14 C -0.061 4.061 15 C 0.125 3.875 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.132 4.132 25 C -0.135 4.135 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.643 -20.165 -2.340 23.916 hybrid contribution 0.817 0.064 0.780 1.132 sum -11.826 -20.101 -1.560 23.374 Atomic orbital electron populations 1.21748 0.94889 1.01487 1.02255 1.20517 0.96065 0.92896 1.02610 1.19838 1.00041 0.96179 0.93308 1.20971 1.00334 0.94933 0.97313 1.21007 0.99581 0.94533 0.97839 1.20002 0.98184 0.95872 0.93072 1.19900 0.93703 0.90405 1.01557 0.89588 1.21944 0.97908 1.01679 0.98827 1.21762 0.97121 0.96232 1.01996 1.20318 0.81456 0.89684 0.79439 1.90624 1.59217 1.49688 1.42242 1.48178 1.19209 1.13329 1.52949 1.21629 0.98050 0.90975 0.95412 1.19274 0.94440 0.76898 0.96849 1.21436 1.29252 0.97199 1.08453 0.92538 1.24944 0.96756 0.95507 0.96992 1.69940 1.43953 1.01908 1.37646 0.86497 0.80304 0.77396 0.83231 1.20666 1.21084 1.19904 1.21115 0.99550 0.94680 0.97809 1.20977 1.00257 0.94914 0.97360 0.92583 0.92572 0.92582 0.91243 0.91230 0.86434 0.86102 0.89767 0.93476 0.93198 0.89560 0.89704 0.93836 0.90871 0.92445 0.95135 0.93839 0.92749 0.86024 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.62 6.07 -27.88 -0.17 -0.79 16 3 C -0.09 -0.92 5.13 -104.62 -0.54 -1.46 16 4 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 5 C -0.11 -1.25 8.76 -39.58 -0.35 -1.59 16 6 C -0.07 -0.88 4.78 -104.62 -0.50 -1.38 16 7 C -0.04 -0.53 2.21 -91.77 -0.20 -0.73 16 8 H 0.09 1.37 7.69 -51.93 -0.40 0.97 16 9 C -0.15 -2.12 8.75 37.16 0.33 -1.79 16 10 C -0.13 -1.96 3.47 -27.88 -0.10 -2.05 16 11 C 0.50 10.39 7.39 -10.98 -0.08 10.31 16 12 O -0.54 -13.25 13.54 5.56 0.08 -13.17 16 13 N -0.60 -12.94 2.86 -182.95 -0.52 -13.46 16 14 C 0.08 1.34 10.24 59.85 0.61 1.95 16 15 C 0.24 6.48 5.16 -5.19 -0.03 6.45 16 16 C -0.52 -15.05 9.39 -34.44 -0.32 -15.37 16 17 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 20 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.11 -1.33 9.67 -39.58 -0.38 -1.71 16 25 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.12 1.22 7.16 -52.49 -0.38 0.85 16 33 H 0.08 1.48 5.95 -51.93 -0.31 1.17 16 34 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.20 7.40 -51.93 -0.38 0.82 16 37 H 0.08 1.09 7.54 -51.93 -0.39 0.70 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 40 H 0.06 0.76 6.44 -51.92 -0.33 0.43 16 41 H 0.03 0.82 8.07 -51.92 -0.42 0.40 16 42 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.12 1.34 7.95 -52.49 -0.42 0.92 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -32.72 366.52 -9.00 -41.72 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.56 Total: -1.20 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -2.23 Total: -10.34 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.21 Total: -39.58 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.72 -9.00 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157043042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.670 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds