Wall clock time and date at job start Tue Mar 31 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 11 11 C 1.50704 * 109.46855 * 185.00302 * 10 7 6 12 12 O 1.21277 * 120.00348 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.46500 * 120.00223 * 359.97438 * 13 11 10 15 15 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 16 16 C 1.50699 * 109.47466 * 90.00095 * 15 13 11 17 17 H 1.08009 * 119.99452 * 359.97438 * 16 15 13 18 18 C 1.37873 * 120.00539 * 179.97438 * 16 15 13 19 19 N 1.31520 * 119.99553 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00262 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46734 * 90.00197 * 20 18 16 22 22 H 1.48497 * 109.47369 * 209.99928 * 20 18 16 23 23 H 1.48499 * 109.47154 * 330.00132 * 20 18 16 24 24 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 25 25 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 33 33 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 34 34 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 35 35 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 36 36 H 1.08999 * 109.46955 * 304.99332 * 10 7 6 37 37 H 1.08993 * 109.47689 * 64.99776 * 10 7 6 38 38 H 1.08995 * 109.47253 * 89.99700 * 14 13 11 39 39 H 1.09000 * 109.47445 * 210.00561 * 14 13 11 40 40 H 1.09008 * 109.47062 * 330.00177 * 14 13 11 41 41 H 1.09013 * 109.46871 * 209.99609 * 15 13 11 42 42 H 1.08997 * 109.47349 * 329.99257 * 15 13 11 43 43 H 0.97005 * 119.99801 * 179.97438 * 19 18 16 44 44 H 1.08002 * 120.00166 * 179.97438 * 24 6 5 45 45 H 1.07996 * 120.00605 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.8036 5.5137 -0.7205 11 6 5.3631 6.9090 -0.6140 12 8 4.7442 7.7669 -0.0208 13 7 6.5512 7.2035 -1.1781 14 6 7.2991 6.1671 -1.8942 15 6 7.0947 8.5600 -1.0750 16 6 7.9420 8.6688 0.1664 17 1 8.0632 7.8131 0.8142 18 6 8.5626 9.8606 0.4753 19 7 8.4154 10.9025 -0.3137 20 14 9.6123 9.9956 2.0146 21 1 11.0158 9.6354 1.6896 22 1 9.5646 11.3890 2.5257 23 1 9.0911 9.0697 3.0520 24 6 2.7234 3.3758 1.1971 25 6 2.2627 2.0725 1.1971 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0926 1.5598 -2.1325 32 1 2.9045 3.8845 -2.1325 33 1 2.8103 7.3727 -0.7227 34 1 2.3273 6.0019 -1.7499 35 1 1.4869 6.2984 -0.2090 36 1 5.4959 4.8087 -0.2603 37 1 4.6673 5.2560 -1.7707 38 1 7.0065 6.1678 -2.9441 39 1 8.3672 6.3692 -1.8144 40 1 7.0799 5.1931 -1.4566 41 1 7.7058 8.7741 -1.9520 42 1 6.2752 9.2766 -1.0196 43 1 8.8517 11.7411 -0.0962 44 1 2.9031 3.8851 2.1324 45 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157043042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:47 Heat of formation + Delta-G solvation = -53.378495 kcal Electronic energy + Delta-G solvation = -22561.451280 eV Core-core repulsion = 19349.125227 eV Total energy + Delta-G solvation = -3212.326053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07687 -40.17950 -37.01107 -36.28099 -34.73562 -33.85248 -31.76289 -30.55784 -29.39532 -28.48538 -27.17341 -25.36544 -24.52630 -23.64541 -22.45314 -20.95384 -19.76859 -18.69869 -18.07672 -17.14419 -16.81628 -16.63787 -16.35608 -15.97737 -15.83339 -14.93204 -14.72575 -14.52730 -14.48904 -14.27650 -14.18995 -13.92338 -13.75636 -13.49236 -13.43308 -13.15037 -13.02424 -12.82074 -12.68529 -12.56336 -12.30254 -12.24187 -12.17087 -11.97399 -11.78092 -11.70669 -11.54222 -11.45168 -10.65009 -10.46749 -9.75306 -9.38532 -9.34639 -8.23103 -6.38145 0.47274 0.56954 1.35071 1.38228 1.48606 1.88468 2.32717 2.48082 2.89682 3.05918 3.63276 3.79481 3.94821 4.07159 4.13297 4.20109 4.22046 4.36427 4.43397 4.53548 4.56603 4.64874 4.66543 4.69706 4.73403 4.77045 4.87076 4.96023 4.97823 5.07866 5.11153 5.13004 5.21252 5.21737 5.23777 5.31639 5.39859 5.43494 5.56759 5.62322 5.79305 5.82954 5.85914 6.06135 6.18889 6.69601 6.82299 7.28199 7.53095 8.83738 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029445 B = 0.002945 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.695871 B = 9504.423779 C = 9697.232378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.084 4.084 7 C -0.031 4.031 8 H 0.059 0.941 9 C -0.141 4.141 10 C -0.114 4.114 11 C 0.494 3.506 12 O -0.590 6.590 13 N -0.614 5.614 14 C 0.078 3.922 15 C 0.259 3.741 16 C -0.542 4.542 17 H 0.051 0.949 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.274 1.274 24 C -0.128 4.128 25 C -0.123 4.123 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.022 0.978 42 H -0.002 1.002 43 H 0.267 0.733 44 H 0.118 0.882 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.311 -24.052 -2.921 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.138 4.138 5 C -0.133 4.133 6 C -0.084 4.084 7 C -0.050 4.050 8 H 0.078 0.922 9 C -0.198 4.198 10 C -0.154 4.154 11 C 0.283 3.717 12 O -0.471 6.471 13 N -0.346 5.346 14 C -0.064 4.064 15 C 0.137 3.863 16 C -0.580 4.580 17 H 0.070 0.930 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.793 3.207 21 H -0.187 1.187 22 H -0.206 1.206 23 H -0.198 1.198 24 C -0.146 4.146 25 C -0.141 4.141 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.040 0.960 42 H 0.016 0.984 43 H 0.076 0.924 44 H 0.136 0.864 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.554 -23.429 -2.669 26.714 hybrid contribution 0.725 1.029 0.843 1.515 sum -11.828 -22.401 -1.825 25.397 Atomic orbital electron populations 1.21737 0.94427 1.02307 1.01788 1.20573 0.96353 0.91456 1.03607 1.20182 0.98886 0.97274 0.92989 1.21260 0.99560 0.94570 0.98391 1.21156 0.99439 0.95079 0.97617 1.19775 0.99926 0.94606 0.94062 1.19756 0.93460 0.91937 0.99854 0.92236 1.21857 0.98102 0.99605 1.00269 1.21734 0.97321 0.92077 1.04224 1.21369 0.80699 0.91548 0.78045 1.90604 1.60492 1.51781 1.44263 1.48227 1.20065 1.12534 1.53736 1.21922 0.96999 0.90748 0.96724 1.18733 0.92377 0.79287 0.95874 1.21698 1.29790 0.97353 1.09194 0.93048 1.25881 0.98035 0.95055 1.00338 1.70058 1.44842 1.02479 1.39469 0.85404 0.79081 0.77419 0.78838 1.18725 1.20566 1.19843 1.21219 1.00229 0.95507 0.97656 1.21193 0.99935 0.94427 0.98551 0.93225 0.92884 0.91168 0.90490 0.90053 0.84229 0.84925 0.93484 0.91431 0.92633 0.87768 0.86552 0.91047 0.91723 0.88952 0.96011 0.98432 0.92398 0.86369 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.08 -0.97 6.07 29.85 0.18 -0.79 16 3 C -0.09 -1.57 5.13 -19.87 -0.10 -1.67 16 4 C -0.12 -2.03 9.70 22.27 0.22 -1.81 16 5 C -0.12 -2.25 8.76 22.27 0.20 -2.05 16 6 C -0.08 -1.95 4.78 -19.87 -0.09 -2.05 16 7 C -0.03 -0.88 2.21 -11.54 -0.03 -0.91 16 8 H 0.06 1.98 7.69 -2.39 -0.02 1.97 16 9 C -0.14 -4.12 8.75 71.98 0.63 -3.49 16 10 C -0.11 -3.25 3.47 29.85 0.10 -3.14 16 11 C 0.49 20.71 7.39 87.66 0.65 21.36 16 12 O -0.59 -30.59 13.54 -3.02 -0.04 -30.63 16 13 N -0.61 -26.57 2.86 -851.12 -2.43 -29.00 16 14 C 0.08 2.36 10.24 127.77 1.31 3.67 16 15 C 0.26 14.30 5.16 85.63 0.44 14.74 16 16 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 17 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 18 C 0.01 0.34 5.46 84.65 0.46 0.80 16 19 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 20 Si 0.97 45.66 29.54 68.60 2.03 47.68 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 24 C -0.13 -2.88 9.67 22.27 0.22 -2.67 16 25 C -0.12 -2.32 9.70 22.27 0.22 -2.11 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 30 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 31 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 32 H 0.13 2.22 7.16 -2.91 -0.02 2.20 16 33 H 0.05 1.73 5.95 -2.39 -0.01 1.72 16 34 H 0.07 1.64 7.39 -2.39 -0.02 1.63 16 35 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.10 2.64 7.40 -2.39 -0.02 2.62 16 37 H 0.12 2.61 7.54 -2.39 -0.02 2.59 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 40 H 0.09 2.14 6.44 -2.38 -0.02 2.13 16 41 H 0.02 1.22 8.07 -2.38 -0.02 1.20 16 42 H 0.00 -0.16 7.42 -2.39 -0.02 -0.17 16 43 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 44 H 0.12 2.62 7.95 -2.91 -0.02 2.60 16 45 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -74.38 366.52 6.13 -68.25 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.94 Total: 13.15 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 5.35 Total: -12.67 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -2.15 Total: -85.79 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.04 Total: -30.63 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -74.38 6.13 -68.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157043042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.874 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds