Wall clock time and date at job start Tue Mar 31 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 11 11 C 1.50704 * 109.46855 * 185.00302 * 10 7 6 12 12 O 1.21277 * 120.00348 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47713 * 324.99376 * 14 13 11 16 16 C 1.52995 * 109.47368 * 85.00143 * 14 13 11 17 17 C 1.50707 * 109.46688 * 204.99558 * 14 13 11 18 18 H 1.07993 * 120.00496 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99763 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99949 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99849 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47132 * 60.00600 * 21 19 17 23 23 H 1.48504 * 109.46747 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47108 * 300.00446 * 21 19 17 25 25 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 26 26 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 34 34 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 35 35 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 36 36 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 37 37 H 1.08999 * 109.46955 * 304.99332 * 10 7 6 38 38 H 1.08993 * 109.47689 * 64.99776 * 10 7 6 39 39 H 0.96997 * 120.00295 * 359.97438 * 13 11 10 40 40 H 1.09005 * 109.47224 * 59.99541 * 16 14 13 41 41 H 1.09002 * 109.47486 * 179.97438 * 16 14 13 42 42 H 1.08997 * 109.46944 * 299.99699 * 16 14 13 43 43 H 0.97001 * 119.99692 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.00166 * 179.97438 * 25 6 5 45 45 H 1.07996 * 120.00605 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.8036 5.5137 -0.7205 11 6 5.3631 6.9090 -0.6140 12 8 4.7442 7.7669 -0.0208 13 7 6.5512 7.2035 -1.1781 14 6 7.0947 8.5600 -1.0750 15 1 6.2788 9.2820 -1.1090 16 6 7.8513 8.7073 0.2465 17 6 8.0367 8.8122 -2.2240 18 1 8.2126 8.0396 -2.9577 19 6 8.6733 10.0299 -2.3390 20 7 8.4587 10.9710 -1.4458 21 14 9.8405 10.3428 -3.7636 22 1 9.1057 10.1996 -5.0460 23 1 10.3915 11.7178 -3.6591 24 1 10.9524 9.3595 -3.7176 25 6 2.7234 3.3758 1.1971 26 6 2.2627 2.0725 1.1971 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0926 1.5598 -2.1325 33 1 2.9045 3.8845 -2.1325 34 1 2.3273 6.0019 -1.7499 35 1 1.4869 6.2984 -0.2090 36 1 2.8103 7.3727 -0.7227 37 1 5.4959 4.8087 -0.2603 38 1 4.6673 5.2560 -1.7707 39 1 7.0463 6.5173 -1.6522 40 1 8.6673 7.9854 0.2804 41 1 8.2561 9.7165 0.3230 42 1 7.1700 8.5249 1.0775 43 1 8.9063 11.8278 -1.5269 44 1 2.9031 3.8851 2.1324 45 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157596477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:58 Heat of formation + Delta-G solvation = -46.812921 kcal Electronic energy + Delta-G solvation = -22333.880377 eV Core-core repulsion = 19121.839029 eV Total energy + Delta-G solvation = -3212.041348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92948 -38.82404 -35.86931 -34.67194 -33.00798 -32.35216 -30.98728 -29.52024 -28.58114 -27.05498 -25.23049 -24.38504 -22.87105 -22.04502 -20.98373 -19.84416 -19.23558 -17.17796 -16.38668 -15.78405 -15.59676 -15.13943 -14.97300 -14.77636 -14.26033 -13.92660 -13.86909 -13.65133 -13.37842 -13.05924 -12.95278 -12.65668 -12.39591 -12.05705 -11.94515 -11.66621 -11.54065 -11.38544 -11.09980 -11.07950 -10.96842 -10.88994 -10.75711 -10.62304 -10.48799 -10.28431 -10.21912 -9.03711 -8.97003 -8.90312 -8.54923 -8.50432 -7.85519 -6.11015 -4.20289 1.28026 1.35623 3.25951 3.31165 3.32318 3.46307 3.67380 4.13826 4.39115 4.56987 4.63900 4.88513 4.92401 4.95318 5.09880 5.16122 5.21025 5.27815 5.30309 5.41687 5.45347 5.53868 5.61912 5.71726 5.79488 5.82848 5.89066 5.91715 6.03379 6.04303 6.19681 6.31496 6.39241 6.52699 6.64501 6.72852 6.84875 6.96768 6.99442 7.17678 7.50484 7.59234 7.71685 7.93903 8.17200 8.71293 8.80456 9.18701 9.47548 10.94852 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.034821 B = 0.002672 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.930267 B =10475.933916 C =10782.345318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.073 4.073 7 C -0.034 4.034 8 H 0.085 0.915 9 C -0.147 4.147 10 C -0.135 4.135 11 C 0.501 3.499 12 O -0.554 6.554 13 N -0.711 5.711 14 C 0.264 3.736 15 H 0.048 0.952 16 C -0.146 4.146 17 C -0.534 4.534 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.902 3.098 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.114 4.114 26 C -0.117 4.117 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.388 0.612 40 H 0.025 0.975 41 H 0.089 0.911 42 H 0.014 0.986 43 H 0.265 0.735 44 H 0.121 0.879 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.326 -19.848 2.225 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.073 4.073 7 C -0.053 4.053 8 H 0.103 0.897 9 C -0.204 4.204 10 C -0.175 4.175 11 C 0.286 3.714 12 O -0.433 6.433 13 N -0.359 5.359 14 C 0.162 3.838 15 H 0.066 0.934 16 C -0.205 4.205 17 C -0.572 4.572 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.729 3.271 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.132 4.132 26 C -0.135 4.135 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.220 0.780 40 H 0.044 0.956 41 H 0.108 0.892 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.139 0.861 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.690 -19.000 2.691 23.006 hybrid contribution 1.002 -0.167 -0.997 1.423 sum -11.688 -19.166 1.694 22.513 Atomic orbital electron populations 1.21748 0.94877 1.01502 1.02256 1.20520 0.96076 0.92888 1.02623 1.19843 0.99995 0.96187 0.93307 1.20983 1.00254 0.94939 0.97343 1.21026 0.99461 0.94538 0.97896 1.20006 0.98286 0.95889 0.93077 1.19868 0.93686 0.90397 1.01380 0.89699 1.21953 0.97864 1.01701 0.98931 1.21763 0.97308 0.96085 1.02347 1.20425 0.81814 0.89659 0.79497 1.90610 1.59626 1.49685 1.43403 1.46553 1.20033 1.15136 1.54168 1.18710 0.93514 0.77774 0.93763 0.93434 1.22072 0.98362 1.03409 0.96678 1.21195 1.26642 0.99820 1.09565 0.92189 1.24897 0.96657 0.95798 0.96419 1.69895 1.42757 1.04994 1.34465 0.86510 0.80874 0.77370 0.82345 1.20192 1.21138 1.20180 1.21099 0.99681 0.94690 0.97748 1.20972 1.00291 0.94917 0.97349 0.92570 0.92588 0.92561 0.91240 0.91213 0.86405 0.86028 0.93388 0.93234 0.89721 0.89575 0.89493 0.78005 0.95568 0.89218 0.96671 0.92546 0.86066 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.62 16 2 C -0.08 -0.62 6.07 -27.88 -0.17 -0.79 16 3 C -0.09 -0.90 5.13 -104.62 -0.54 -1.44 16 4 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 5 C -0.11 -1.24 8.76 -39.58 -0.35 -1.58 16 6 C -0.07 -0.87 4.78 -104.62 -0.50 -1.38 16 7 C -0.03 -0.47 2.21 -91.77 -0.20 -0.68 16 8 H 0.08 1.27 7.69 -51.93 -0.40 0.87 16 9 C -0.15 -2.10 8.75 37.16 0.33 -1.77 16 10 C -0.13 -1.92 4.91 -27.88 -0.14 -2.06 16 11 C 0.50 9.76 7.51 -10.98 -0.08 9.68 16 12 O -0.55 -12.77 13.63 5.56 0.08 -12.69 16 13 N -0.71 -14.80 5.07 -54.93 -0.28 -15.08 16 14 C 0.26 6.76 2.56 -69.08 -0.18 6.59 16 15 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 16 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 17 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -25.04 11.32 55.43 0.63 -24.41 16 21 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.11 -1.29 9.67 -39.58 -0.38 -1.67 16 26 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.12 1.24 7.16 -52.49 -0.38 0.87 16 34 H 0.05 0.61 7.39 -51.93 -0.38 0.23 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.46 5.95 -51.93 -0.31 1.15 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.10 7.57 -51.93 -0.39 0.70 16 39 H 0.39 7.00 8.54 -40.82 -0.35 6.65 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.12 1.25 7.95 -52.49 -0.42 0.83 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -30.21 365.05 -9.28 -39.49 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.52 Total: 6.51 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -2.66 Total: -15.02 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.35 Total: -39.49 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.21 -9.28 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157596477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.321 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds