Wall clock time and date at job start Tue Mar 31 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 11 11 C 1.50704 * 109.46855 * 185.00302 * 10 7 6 12 12 O 1.21277 * 120.00348 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47713 * 324.99376 * 14 13 11 16 16 C 1.52995 * 109.47368 * 85.00143 * 14 13 11 17 17 C 1.50707 * 109.46688 * 204.99558 * 14 13 11 18 18 H 1.07993 * 120.00496 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99763 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99949 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99849 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47132 * 60.00600 * 21 19 17 23 23 H 1.48504 * 109.46747 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47108 * 300.00446 * 21 19 17 25 25 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 26 26 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 34 34 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 35 35 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 36 36 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 37 37 H 1.08999 * 109.46955 * 304.99332 * 10 7 6 38 38 H 1.08993 * 109.47689 * 64.99776 * 10 7 6 39 39 H 0.96997 * 120.00295 * 359.97438 * 13 11 10 40 40 H 1.09005 * 109.47224 * 59.99541 * 16 14 13 41 41 H 1.09002 * 109.47486 * 179.97438 * 16 14 13 42 42 H 1.08997 * 109.46944 * 299.99699 * 16 14 13 43 43 H 0.97001 * 119.99692 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.00166 * 179.97438 * 25 6 5 45 45 H 1.07996 * 120.00605 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.8036 5.5137 -0.7205 11 6 5.3631 6.9090 -0.6140 12 8 4.7442 7.7669 -0.0208 13 7 6.5512 7.2035 -1.1781 14 6 7.0947 8.5600 -1.0750 15 1 6.2788 9.2820 -1.1090 16 6 7.8513 8.7073 0.2465 17 6 8.0367 8.8122 -2.2240 18 1 8.2126 8.0396 -2.9577 19 6 8.6733 10.0299 -2.3390 20 7 8.4587 10.9710 -1.4458 21 14 9.8405 10.3428 -3.7636 22 1 9.1057 10.1996 -5.0460 23 1 10.3915 11.7178 -3.6591 24 1 10.9524 9.3595 -3.7176 25 6 2.7234 3.3758 1.1971 26 6 2.2627 2.0725 1.1971 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0926 1.5598 -2.1325 33 1 2.9045 3.8845 -2.1325 34 1 2.3273 6.0019 -1.7499 35 1 1.4869 6.2984 -0.2090 36 1 2.8103 7.3727 -0.7227 37 1 5.4959 4.8087 -0.2603 38 1 4.6673 5.2560 -1.7707 39 1 7.0463 6.5173 -1.6522 40 1 8.6673 7.9854 0.2804 41 1 8.2561 9.7165 0.3230 42 1 7.1700 8.5249 1.0775 43 1 8.9063 11.8278 -1.5269 44 1 2.9031 3.8851 2.1324 45 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157596477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:58 Heat of formation + Delta-G solvation = -62.626071 kcal Electronic energy + Delta-G solvation = -22334.566087 eV Core-core repulsion = 19121.839029 eV Total energy + Delta-G solvation = -3212.727058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.02178 -40.15762 -37.12411 -36.27713 -34.29798 -33.85558 -31.76586 -31.24083 -29.51854 -28.41699 -27.32353 -25.19551 -23.65050 -23.38608 -22.24891 -21.18680 -20.64032 -18.84679 -17.75378 -17.13577 -16.78896 -16.63082 -16.16107 -15.88978 -15.81033 -14.94308 -14.68524 -14.54388 -14.44624 -14.38789 -14.34603 -13.94711 -13.65708 -13.51512 -13.17915 -12.91662 -12.87615 -12.76147 -12.64655 -12.31672 -12.27683 -12.20475 -12.15801 -11.99202 -11.78450 -11.55211 -11.46140 -11.10754 -10.63503 -10.49264 -9.75648 -9.68509 -9.35242 -8.17059 -6.34707 0.46977 0.56632 1.44680 1.46878 1.54688 1.89418 2.36541 2.67220 2.90805 3.12962 3.75066 3.81302 3.97273 4.07744 4.15684 4.21640 4.30018 4.40050 4.54004 4.56046 4.64574 4.69252 4.70710 4.76157 4.76573 4.87319 4.92359 5.03910 5.10577 5.11198 5.12486 5.21196 5.21903 5.31485 5.38672 5.42430 5.46134 5.60752 5.64859 5.71560 5.78987 5.82700 5.93171 6.11454 6.18606 6.73657 7.02508 7.33435 7.62705 8.88930 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.034821 B = 0.002672 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.930267 B =10475.933916 C =10782.345318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.085 4.085 7 C -0.028 4.028 8 H 0.066 0.934 9 C -0.143 4.143 10 C -0.120 4.120 11 C 0.496 3.504 12 O -0.593 6.593 13 N -0.710 5.710 14 C 0.270 3.730 15 H -0.003 1.003 16 C -0.133 4.133 17 C -0.547 4.547 18 H 0.073 0.927 19 C 0.012 3.988 20 N -0.918 5.918 21 Si 0.973 3.027 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.264 1.264 25 C -0.126 4.126 26 C -0.123 4.123 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.404 0.596 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.011 0.989 43 H 0.265 0.735 44 H 0.123 0.877 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.208 -22.801 0.915 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.085 4.085 7 C -0.047 4.047 8 H 0.084 0.916 9 C -0.200 4.200 10 C -0.160 4.160 11 C 0.284 3.716 12 O -0.475 6.475 13 N -0.359 5.359 14 C 0.167 3.833 15 H 0.015 0.985 16 C -0.192 4.192 17 C -0.585 4.585 18 H 0.091 0.909 19 C -0.188 4.188 20 N -0.556 5.556 21 Si 0.797 3.203 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.189 1.189 25 C -0.144 4.144 26 C -0.141 4.141 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.239 0.761 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.141 0.859 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.576 -21.999 1.373 25.377 hybrid contribution 0.875 0.718 -0.539 1.254 sum -11.701 -21.281 0.834 24.300 Atomic orbital electron populations 1.21736 0.94414 1.02312 1.01789 1.20574 0.96369 0.91485 1.03587 1.20181 0.98904 0.97268 0.93012 1.21250 0.99702 0.94624 0.98403 1.21158 0.99530 0.95111 0.97720 1.19803 0.99928 0.94777 0.93978 1.19733 0.93264 0.91695 1.00029 0.91588 1.21873 0.98256 0.99721 1.00155 1.21737 0.97660 0.92309 1.04250 1.21358 0.80828 0.91425 0.77973 1.90603 1.60467 1.51587 1.44884 1.46332 1.20854 1.13749 1.54927 1.18297 0.91826 0.79255 0.93948 0.98516 1.21895 0.98480 1.02290 0.96548 1.21532 1.26591 1.00385 1.10007 0.90885 1.25832 0.98352 0.95551 0.99044 1.70052 1.43805 1.05415 1.36356 0.85386 0.78770 0.77238 0.78865 1.19530 1.21230 1.18855 1.21235 1.00079 0.95426 0.97679 1.21207 0.99872 0.94502 0.98477 0.91166 0.93110 0.92991 0.90372 0.90215 0.84501 0.85243 0.91859 0.92570 0.93322 0.87409 0.87015 0.76094 0.94202 0.91605 0.96962 0.92583 0.85933 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.08 -0.98 6.07 29.85 0.18 -0.79 16 3 C -0.09 -1.57 5.13 -19.87 -0.10 -1.67 16 4 C -0.12 -2.12 9.70 22.27 0.22 -1.91 16 5 C -0.12 -2.34 8.76 22.27 0.20 -2.15 16 6 C -0.08 -1.93 4.78 -19.87 -0.09 -2.02 16 7 C -0.03 -0.76 2.21 -11.54 -0.03 -0.79 16 8 H 0.07 2.02 7.69 -2.39 -0.02 2.00 16 9 C -0.14 -4.08 8.75 71.98 0.63 -3.45 16 10 C -0.12 -3.26 4.91 29.85 0.15 -3.11 16 11 C 0.50 19.51 7.51 87.66 0.66 20.17 16 12 O -0.59 -28.56 13.63 -3.02 -0.04 -28.60 16 13 N -0.71 -29.51 5.07 -446.10 -2.26 -31.77 16 14 C 0.27 14.20 2.56 44.25 0.11 14.31 16 15 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 16 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 17 C -0.55 -29.16 8.73 25.60 0.22 -28.94 16 18 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 19 C 0.01 0.66 5.30 84.66 0.45 1.11 16 20 N -0.92 -53.21 11.32 21.45 0.24 -52.96 16 21 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 25 C -0.13 -2.69 9.67 22.27 0.22 -2.48 16 26 C -0.12 -2.23 9.70 22.27 0.22 -2.01 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 31 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 32 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.13 2.31 7.16 -2.91 -0.02 2.28 16 34 H 0.06 1.57 7.39 -2.39 -0.02 1.55 16 35 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.05 1.75 5.95 -2.39 -0.01 1.73 16 37 H 0.11 2.52 8.14 -2.39 -0.02 2.51 16 38 H 0.11 2.53 7.57 -2.39 -0.02 2.51 16 39 H 0.40 14.05 8.54 -92.71 -0.79 13.26 16 40 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.12 2.48 7.95 -2.91 -0.02 2.45 16 45 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -66.95 365.05 4.54 -62.42 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.17 Total: 27.54 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 4.40 Total: -20.82 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.02 Total: -84.74 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.04 Total: -28.60 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -66.95 4.54 -62.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157596477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.211 kcal (2) G-P(sol) polarization free energy of solvation -66.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds