Wall clock time and date at job start Tue Mar 31 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 11 11 C 1.50704 * 109.46855 * 185.00302 * 10 7 6 12 12 O 1.21277 * 120.00348 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.47327 * 35.00137 * 14 13 11 16 16 C 1.53006 * 109.47220 * 274.99536 * 14 13 11 17 17 C 1.50708 * 109.46967 * 154.99894 * 14 13 11 18 18 H 1.07997 * 120.00036 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99969 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99910 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99940 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47161 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46965 * 119.99861 * 21 19 17 24 24 H 1.48497 * 109.47513 * 240.00270 * 21 19 17 25 25 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 26 26 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 34 34 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 35 35 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 36 36 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 37 37 H 1.08999 * 109.46955 * 304.99332 * 10 7 6 38 38 H 1.08993 * 109.47689 * 64.99776 * 10 7 6 39 39 H 0.96997 * 120.00295 * 359.97438 * 13 11 10 40 40 H 1.09003 * 109.47214 * 300.00493 * 16 14 13 41 41 H 1.08998 * 109.46453 * 59.99921 * 16 14 13 42 42 H 1.08997 * 109.47103 * 180.02562 * 16 14 13 43 43 H 0.97005 * 120.00053 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.00166 * 179.97438 * 25 6 5 45 45 H 1.07996 * 120.00605 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.8036 5.5137 -0.7205 11 6 5.3631 6.9090 -0.6140 12 8 4.7442 7.7669 -0.0208 13 7 6.5512 7.2035 -1.1781 14 6 7.0947 8.5600 -1.0750 15 1 6.8272 8.9862 -0.1082 16 6 6.5144 9.4283 -2.1933 17 6 8.5954 8.5111 -1.2045 18 1 9.0943 7.5642 -1.3486 19 6 9.3313 9.6752 -1.1389 20 7 8.7237 10.8283 -0.9639 21 14 11.1915 9.6144 -1.2986 22 1 11.6264 8.2071 -1.4876 23 1 11.6145 10.4241 -2.4694 24 1 11.8124 10.1636 -0.0666 25 6 2.7234 3.3758 1.1971 26 6 2.2627 2.0725 1.1971 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0926 1.5598 -2.1325 33 1 2.9045 3.8845 -2.1325 34 1 1.4869 6.2984 -0.2090 35 1 2.8103 7.3727 -0.7227 36 1 2.3273 6.0019 -1.7499 37 1 5.4959 4.8087 -0.2603 38 1 4.6673 5.2560 -1.7707 39 1 7.0463 6.5173 -1.6522 40 1 6.7820 9.0020 -3.1602 41 1 5.4291 9.4636 -2.0997 42 1 6.9192 10.4374 -2.1169 43 1 9.2415 11.6472 -0.9174 44 1 2.9031 3.8851 2.1324 45 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157596768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:03 Heat of formation + Delta-G solvation = -62.747923 kcal Electronic energy + Delta-G solvation = -22339.099193 eV Core-core repulsion = 19126.366851 eV Total energy + Delta-G solvation = -3212.732342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02203 -40.15766 -37.12282 -36.27840 -34.30059 -33.85527 -31.76606 -31.24361 -29.52144 -28.39887 -27.33169 -25.19977 -23.65071 -23.39704 -22.23445 -21.18310 -20.64242 -18.85719 -17.74588 -17.18688 -16.82176 -16.59314 -16.07524 -15.86843 -15.84007 -15.02272 -14.68733 -14.55738 -14.45357 -14.43656 -14.17830 -13.95710 -13.76230 -13.49257 -13.13313 -13.00033 -12.84906 -12.74276 -12.63169 -12.31669 -12.27534 -12.22115 -12.12422 -11.99899 -11.78408 -11.55566 -11.46045 -11.08619 -10.66956 -10.46878 -9.75681 -9.68991 -9.35215 -8.17766 -6.35141 0.46987 0.56595 1.43668 1.44568 1.56741 1.89429 2.36148 2.67075 2.90825 3.12492 3.75045 3.81246 3.97257 4.07761 4.16009 4.21606 4.29973 4.40119 4.54049 4.56037 4.64578 4.69140 4.70867 4.76424 4.76832 4.87618 4.92703 5.04551 5.10625 5.11180 5.12530 5.21276 5.21924 5.31540 5.39337 5.42610 5.46159 5.60811 5.64824 5.71963 5.78941 5.82709 5.93075 6.11630 6.18607 6.73792 7.02449 7.33150 7.62672 8.88635 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033607 B = 0.002683 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.959205 B =10433.680511 C =10793.114787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.085 4.085 7 C -0.029 4.029 8 H 0.064 0.936 9 C -0.142 4.142 10 C -0.120 4.120 11 C 0.496 3.504 12 O -0.594 6.594 13 N -0.710 5.710 14 C 0.270 3.730 15 H -0.004 1.004 16 C -0.132 4.132 17 C -0.545 4.545 18 H 0.073 0.927 19 C 0.012 3.988 20 N -0.918 5.918 21 Si 0.973 3.027 22 H -0.260 1.260 23 H -0.278 1.278 24 H -0.284 1.284 25 C -0.127 4.127 26 C -0.123 4.123 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.404 0.596 40 H 0.040 0.960 41 H 0.012 0.988 42 H 0.065 0.935 43 H 0.265 0.735 44 H 0.122 0.878 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.201 -22.294 -0.909 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.085 4.085 7 C -0.048 4.048 8 H 0.082 0.918 9 C -0.199 4.199 10 C -0.159 4.159 11 C 0.284 3.716 12 O -0.475 6.475 13 N -0.359 5.359 14 C 0.166 3.834 15 H 0.014 0.986 16 C -0.191 4.191 17 C -0.583 4.583 18 H 0.091 0.909 19 C -0.188 4.188 20 N -0.557 5.557 21 Si 0.798 3.202 22 H -0.184 1.184 23 H -0.204 1.204 24 H -0.210 1.210 25 C -0.145 4.145 26 C -0.141 4.141 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.239 0.761 40 H 0.059 0.941 41 H 0.031 0.969 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.140 0.860 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.585 -21.493 -0.483 25.431 hybrid contribution 1.156 0.590 -0.006 1.297 sum -12.430 -20.904 -0.489 24.325 Atomic orbital electron populations 1.21736 0.94397 1.02313 1.01795 1.20574 0.96383 0.91483 1.03580 1.20182 0.98913 0.97268 0.93016 1.21255 0.99673 0.94630 0.98391 1.21161 0.99495 0.95096 0.97709 1.19806 0.99907 0.94795 0.93984 1.19737 0.93315 0.91729 0.99999 0.91761 1.21868 0.98174 0.99717 1.00179 1.21736 0.97599 0.92291 1.04319 1.21357 0.80960 0.91399 0.77866 1.90603 1.60211 1.51744 1.44986 1.46331 1.20613 1.13784 1.55129 1.18313 0.92481 0.78948 0.93676 0.98577 1.21884 0.96234 1.02542 0.98467 1.21591 0.91276 0.94220 1.51230 0.90931 1.25828 1.03901 0.94828 0.94260 1.70064 1.37342 0.98697 1.49549 0.85283 0.78752 0.78693 0.77511 1.18355 1.20401 1.21002 1.21236 1.00126 0.95452 0.97699 1.21204 0.99901 0.94497 0.98493 0.93137 0.92945 0.91169 0.90426 0.90181 0.84429 0.85106 0.92624 0.93237 0.91719 0.87629 0.86793 0.76095 0.94139 0.96872 0.91655 0.92590 0.86046 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.08 -0.98 6.07 29.85 0.18 -0.80 16 3 C -0.09 -1.58 5.13 -19.87 -0.10 -1.68 16 4 C -0.12 -2.10 9.70 22.27 0.22 -1.88 16 5 C -0.12 -2.30 8.76 22.27 0.20 -2.11 16 6 C -0.08 -1.93 4.78 -19.87 -0.09 -2.03 16 7 C -0.03 -0.78 2.21 -11.54 -0.03 -0.81 16 8 H 0.06 1.99 7.69 -2.39 -0.02 1.97 16 9 C -0.14 -4.00 8.75 71.98 0.63 -3.37 16 10 C -0.12 -3.25 4.91 29.85 0.15 -3.11 16 11 C 0.50 19.50 7.51 87.66 0.66 20.16 16 12 O -0.59 -28.54 13.63 -3.02 -0.04 -28.58 16 13 N -0.71 -29.49 5.07 -446.08 -2.26 -31.75 16 14 C 0.27 14.14 2.56 44.25 0.11 14.25 16 15 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 16 C -0.13 -6.79 9.26 71.98 0.67 -6.13 16 17 C -0.54 -29.10 8.73 25.60 0.22 -28.88 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 19 C 0.01 0.63 5.30 84.66 0.45 1.08 16 20 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 21 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 25 C -0.13 -2.75 9.67 22.27 0.22 -2.54 16 26 C -0.12 -2.26 9.70 22.27 0.22 -2.05 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 31 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 32 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.13 2.26 7.16 -2.91 -0.02 2.24 16 34 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.05 1.75 5.95 -2.39 -0.01 1.73 16 36 H 0.06 1.55 7.39 -2.39 -0.02 1.53 16 37 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.11 2.51 7.57 -2.39 -0.02 2.49 16 39 H 0.40 14.05 8.54 -92.71 -0.79 13.26 16 40 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.06 3.67 6.07 -2.39 -0.01 3.66 16 43 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 44 H 0.12 2.51 7.95 -2.91 -0.02 2.49 16 45 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -67.10 365.04 4.54 -62.57 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.17 Total: 27.14 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 4.40 Total: -20.73 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.02 Total: -84.71 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.04 Total: -28.58 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -67.10 4.54 -62.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157596768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.182 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds