Wall clock time and date at job start Tue Mar 31 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47062 * 2 1 4 4 C 1.53003 * 109.47062 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46901 * 65.00446 * 4 3 2 6 6 C 1.52998 * 109.47006 * 63.15966 * 5 4 3 7 7 C 1.53001 * 109.46937 * 175.80486 * 6 5 4 8 8 C 1.50696 * 109.47023 * 185.00760 * 4 3 2 9 9 O 1.21279 * 120.00298 * 335.02866 * 8 4 3 10 10 N 1.34780 * 120.00012 * 155.03755 * 8 4 3 11 11 C 1.39236 * 119.99940 * 187.33832 * 10 8 4 12 12 C 1.39480 * 119.83213 * 146.29813 * 11 10 8 13 13 C 1.36376 * 120.16713 * 180.29641 * 12 11 10 14 14 C 1.40871 * 119.82912 * 359.47834 * 13 12 11 15 15 C 1.41150 * 120.16632 * 180.25047 * 14 13 12 16 16 H 1.08001 * 120.00105 * 193.53049 * 15 14 13 17 17 C 1.39902 * 120.00104 * 13.53448 * 15 14 13 18 18 N 1.30878 * 120.00047 * 30.75000 * 17 15 14 19 19 Si 1.86803 * 120.00153 * 210.75373 * 17 15 14 20 20 H 1.48502 * 109.46798 * 89.99595 * 19 17 15 21 21 H 1.48494 * 109.47136 * 209.99660 * 19 17 15 22 22 H 1.48496 * 109.46913 * 329.99911 * 19 17 15 23 23 C 1.40872 * 119.66682 * 0.51195 * 14 13 12 24 24 C 1.36371 * 119.83322 * 359.74077 * 23 14 13 25 25 H 1.08995 * 109.46790 * 299.99511 * 1 2 3 26 26 H 1.09003 * 109.46992 * 59.99319 * 1 2 3 27 27 H 1.09002 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47240 * 240.00747 * 2 1 3 29 29 H 1.08994 * 109.47290 * 120.00655 * 2 1 3 30 30 H 1.09000 * 109.46502 * 60.00759 * 3 2 1 31 31 H 1.08994 * 109.47603 * 300.00464 * 3 2 1 32 32 H 1.09009 * 109.47227 * 305.00606 * 4 3 2 33 33 H 1.09009 * 109.46856 * 183.15955 * 5 4 3 34 34 H 1.08998 * 109.47164 * 303.15042 * 5 4 3 35 35 H 1.09002 * 109.46831 * 295.80017 * 6 5 4 36 36 H 1.08990 * 109.47156 * 55.80561 * 6 5 4 37 37 H 1.08995 * 109.47246 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47392 * 299.99690 * 7 6 5 39 39 H 1.09005 * 109.47152 * 59.99565 * 7 6 5 40 40 H 0.97001 * 120.00244 * 7.33833 * 10 8 4 41 41 H 1.08001 * 119.92129 * 0.02562 * 12 11 10 42 42 H 1.07996 * 120.08917 * 179.69246 * 13 12 11 43 43 H 0.97000 * 119.99562 * 180.02562 * 18 17 15 44 44 H 1.08002 * 120.08031 * 179.71387 * 23 14 13 45 45 H 1.07999 * 119.91552 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0805 0.8328 -1.3064 6 6 3.6369 1.7043 -2.4831 7 6 4.2345 1.1534 -3.7794 8 6 4.0723 2.8579 0.1247 9 8 3.3769 3.7823 -0.2399 10 7 5.2944 3.0965 0.6405 11 6 5.6984 4.4040 0.8973 12 6 6.5317 4.6721 1.9832 13 6 6.9268 5.9510 2.2446 14 6 6.4999 7.0010 1.4081 15 6 6.9088 8.3266 1.6689 16 1 6.4175 9.1507 1.1732 17 6 7.9506 8.5729 2.5696 18 7 8.9137 7.6981 2.7113 19 14 7.9670 10.1503 3.5701 20 1 7.2448 9.9325 4.8493 21 1 9.3710 10.5414 3.8547 22 1 7.2982 11.2307 2.8018 23 6 5.6585 6.7222 0.3132 24 6 5.2676 5.4390 0.0675 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9331 0.8530 0.8427 33 1 5.1691 0.7812 -1.2825 34 1 3.6719 -0.1709 -1.4231 35 1 2.5491 1.6954 -2.5520 36 1 3.9830 2.7262 -2.3291 37 1 3.9181 1.7739 -4.6178 38 1 5.3222 1.1621 -3.7107 39 1 3.8884 0.1312 -3.9335 40 1 5.8924 2.3575 0.8329 41 1 6.8615 3.8655 2.6213 42 1 7.5680 6.1578 3.0886 43 1 9.6359 7.8688 3.3360 44 1 5.3236 7.5228 -0.3297 45 1 4.6222 5.2238 -0.7713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163609533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:22 Heat of formation + Delta-G solvation = -51.320082 kcal Electronic energy + Delta-G solvation = -22815.702871 eV Core-core repulsion = 19603.466078 eV Total energy + Delta-G solvation = -3212.236793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.00958 -37.65670 -36.25543 -34.39795 -33.83727 -32.99269 -30.83253 -29.50541 -28.83847 -26.36490 -25.34971 -23.65539 -22.11271 -21.65513 -20.85871 -20.08650 -18.91183 -17.40183 -16.68561 -16.20109 -15.77477 -15.29577 -15.19863 -14.31366 -14.01510 -13.88904 -13.82917 -13.41049 -13.29978 -12.81727 -12.71320 -12.30259 -12.07135 -12.03181 -11.93397 -11.87046 -11.57015 -11.33781 -11.15686 -11.02239 -10.95986 -10.94067 -10.69715 -10.60246 -10.53007 -10.27257 -10.11866 -9.62689 -9.41338 -8.89419 -8.58306 -7.50056 -7.10249 -6.87866 -4.24563 2.61890 3.00529 3.06053 3.09385 3.15947 3.42003 3.82810 3.88614 4.52214 4.66572 4.76667 4.89484 4.98884 5.05257 5.12933 5.27540 5.39571 5.54520 5.57075 5.61609 5.69628 5.73701 5.75794 5.81726 5.88803 5.92782 6.03360 6.08030 6.23347 6.23609 6.26070 6.35035 6.46510 6.54718 6.84167 6.99346 7.02482 7.22531 7.35341 7.62045 7.78443 7.95890 8.06907 8.29032 8.39556 8.59224 8.84572 8.87591 9.05810 10.01688 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.003156 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.340948 B = 8869.416443 C = 9185.710316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.107 4.107 5 C -0.108 4.108 6 C -0.131 4.131 7 C -0.150 4.150 8 C 0.504 3.496 9 O -0.533 6.533 10 N -0.650 5.650 11 C -0.022 4.022 12 C -0.107 4.107 13 C -0.175 4.175 14 C 0.105 3.895 15 C -0.458 4.458 16 H 0.081 0.919 17 C 0.083 3.917 18 N -0.771 5.771 19 Si 0.902 3.098 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.260 1.260 23 C -0.229 4.229 24 C -0.072 4.072 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.393 0.607 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.283 0.717 44 H 0.092 0.908 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.213 -14.471 -4.006 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.128 4.128 5 C -0.146 4.146 6 C -0.168 4.168 7 C -0.208 4.208 8 C 0.291 3.709 9 O -0.410 6.410 10 N -0.292 5.292 11 C -0.115 4.115 12 C -0.127 4.127 13 C -0.195 4.195 14 C 0.102 3.898 15 C -0.485 4.485 16 H 0.099 0.901 17 C -0.138 4.138 18 N -0.394 5.394 19 Si 0.726 3.274 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.184 1.184 23 C -0.249 4.249 24 C -0.091 4.091 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.226 0.774 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.488 -13.865 -4.148 16.295 hybrid contribution 0.539 0.280 0.722 0.943 sum -6.950 -13.585 -3.426 15.640 Atomic orbital electron populations 1.21761 0.95937 1.01244 1.01994 1.21592 0.95829 0.96922 1.01877 1.21459 0.92527 0.96419 1.03588 1.21374 0.97707 0.94186 0.99578 1.21576 1.00745 0.99224 0.93028 1.21638 1.01043 1.00266 0.93873 1.21762 1.00886 1.00508 0.97597 1.20473 0.81281 0.90825 0.78315 1.90640 1.56850 1.45487 1.48015 1.43002 1.15387 1.07793 1.63017 1.17151 1.09786 0.82911 1.01608 1.20184 1.00037 0.96818 0.95682 1.20887 1.05336 0.91322 1.01929 1.17632 0.89573 0.93120 0.89434 1.19590 1.14198 0.93504 1.21252 0.90109 1.25997 0.93569 0.98345 0.95875 1.69938 1.06058 1.35702 1.27722 0.86408 0.78218 0.82039 0.80746 1.19041 1.20305 1.18366 1.20570 1.08071 0.95121 1.01134 1.20468 0.98528 0.92386 0.97757 0.92741 0.92710 0.93004 0.91784 0.92206 0.91717 0.90513 0.89641 0.91735 0.90926 0.91614 0.91065 0.92866 0.92869 0.93119 0.77431 0.89444 0.86205 0.90644 0.88950 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.12 -1.13 5.69 -26.73 -0.15 -1.28 16 3 C -0.10 -1.21 3.96 -26.73 -0.11 -1.31 16 4 C -0.11 -1.30 2.50 -91.77 -0.23 -1.53 16 5 C -0.11 -1.14 4.81 -26.73 -0.13 -1.27 16 6 C -0.13 -1.57 5.28 -26.73 -0.14 -1.71 16 7 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 8 C 0.50 8.69 5.67 -10.99 -0.06 8.63 16 9 O -0.53 -11.21 12.68 5.56 0.07 -11.14 16 10 N -0.65 -11.68 5.31 -9.74 -0.05 -11.73 16 11 C -0.02 -0.51 6.35 -83.57 -0.53 -1.04 16 12 C -0.11 -2.50 9.89 -39.79 -0.39 -2.89 16 13 C -0.18 -4.56 8.78 -39.26 -0.34 -4.90 16 14 C 0.11 2.86 5.66 -106.80 -0.60 2.26 16 15 C -0.46 -12.23 8.98 -37.85 -0.34 -12.57 16 16 H 0.08 2.10 8.00 -52.49 -0.42 1.68 16 17 C 0.08 2.06 4.94 -17.34 -0.09 1.98 16 18 N -0.77 -19.45 11.10 55.55 0.62 -18.83 16 19 Si 0.90 18.38 29.65 -169.99 -5.04 13.34 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 C -0.23 -5.95 9.74 -39.26 -0.38 -6.33 16 24 C -0.07 -1.76 8.65 -39.79 -0.34 -2.11 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.53 6.50 -51.93 -0.34 0.19 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.00 6.26 -51.93 -0.33 0.67 16 32 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.63 6.42 -51.93 -0.33 0.29 16 35 H 0.07 0.77 6.62 -51.93 -0.34 0.43 16 36 H 0.07 1.09 6.51 -51.93 -0.34 0.75 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.39 5.69 8.82 -40.82 -0.36 5.33 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.12 3.17 5.88 -52.49 -0.31 2.86 16 43 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 44 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 45 H 0.11 2.69 6.00 -52.49 -0.31 2.38 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -29.26 357.62 -9.41 -38.67 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -7.29 Total: 10.49 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -3.11 Total: -26.18 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.56 Total: -30.57 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.14 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.04 Total: 13.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.26 -9.41 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163609533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.646 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds