Wall clock time and date at job start Tue Mar 31 2020 06:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47062 * 2 1 4 4 C 1.53003 * 109.47062 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46901 * 65.00446 * 4 3 2 6 6 C 1.52998 * 109.47006 * 63.15966 * 5 4 3 7 7 C 1.53001 * 109.46937 * 175.80486 * 6 5 4 8 8 C 1.50696 * 109.47023 * 185.00760 * 4 3 2 9 9 O 1.21279 * 120.00298 * 335.02866 * 8 4 3 10 10 N 1.34780 * 120.00012 * 155.03755 * 8 4 3 11 11 C 1.39236 * 119.99940 * 187.33832 * 10 8 4 12 12 C 1.39480 * 119.83213 * 146.29813 * 11 10 8 13 13 C 1.36376 * 120.16713 * 180.29641 * 12 11 10 14 14 C 1.40871 * 119.82912 * 359.47834 * 13 12 11 15 15 C 1.41150 * 120.16632 * 180.25047 * 14 13 12 16 16 H 1.08001 * 120.00105 * 193.53049 * 15 14 13 17 17 C 1.39902 * 120.00104 * 13.53448 * 15 14 13 18 18 N 1.30878 * 120.00047 * 30.75000 * 17 15 14 19 19 Si 1.86803 * 120.00153 * 210.75373 * 17 15 14 20 20 H 1.48502 * 109.46798 * 89.99595 * 19 17 15 21 21 H 1.48494 * 109.47136 * 209.99660 * 19 17 15 22 22 H 1.48496 * 109.46913 * 329.99911 * 19 17 15 23 23 C 1.40872 * 119.66682 * 0.51195 * 14 13 12 24 24 C 1.36371 * 119.83322 * 359.74077 * 23 14 13 25 25 H 1.08995 * 109.46790 * 299.99511 * 1 2 3 26 26 H 1.09003 * 109.46992 * 59.99319 * 1 2 3 27 27 H 1.09002 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47240 * 240.00747 * 2 1 3 29 29 H 1.08994 * 109.47290 * 120.00655 * 2 1 3 30 30 H 1.09000 * 109.46502 * 60.00759 * 3 2 1 31 31 H 1.08994 * 109.47603 * 300.00464 * 3 2 1 32 32 H 1.09009 * 109.47227 * 305.00606 * 4 3 2 33 33 H 1.09009 * 109.46856 * 183.15955 * 5 4 3 34 34 H 1.08998 * 109.47164 * 303.15042 * 5 4 3 35 35 H 1.09002 * 109.46831 * 295.80017 * 6 5 4 36 36 H 1.08990 * 109.47156 * 55.80561 * 6 5 4 37 37 H 1.08995 * 109.47246 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47392 * 299.99690 * 7 6 5 39 39 H 1.09005 * 109.47152 * 59.99565 * 7 6 5 40 40 H 0.97001 * 120.00244 * 7.33833 * 10 8 4 41 41 H 1.08001 * 119.92129 * 0.02562 * 12 11 10 42 42 H 1.07996 * 120.08917 * 179.69246 * 13 12 11 43 43 H 0.97000 * 119.99562 * 180.02562 * 18 17 15 44 44 H 1.08002 * 120.08031 * 179.71387 * 23 14 13 45 45 H 1.07999 * 119.91552 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0805 0.8328 -1.3064 6 6 3.6369 1.7043 -2.4831 7 6 4.2345 1.1534 -3.7794 8 6 4.0723 2.8579 0.1247 9 8 3.3769 3.7823 -0.2399 10 7 5.2944 3.0965 0.6405 11 6 5.6984 4.4040 0.8973 12 6 6.5317 4.6721 1.9832 13 6 6.9268 5.9510 2.2446 14 6 6.4999 7.0010 1.4081 15 6 6.9088 8.3266 1.6689 16 1 6.4175 9.1507 1.1732 17 6 7.9506 8.5729 2.5696 18 7 8.9137 7.6981 2.7113 19 14 7.9670 10.1503 3.5701 20 1 7.2448 9.9325 4.8493 21 1 9.3710 10.5414 3.8547 22 1 7.2982 11.2307 2.8018 23 6 5.6585 6.7222 0.3132 24 6 5.2676 5.4390 0.0675 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9331 0.8530 0.8427 33 1 5.1691 0.7812 -1.2825 34 1 3.6719 -0.1709 -1.4231 35 1 2.5491 1.6954 -2.5520 36 1 3.9830 2.7262 -2.3291 37 1 3.9181 1.7739 -4.6178 38 1 5.3222 1.1621 -3.7107 39 1 3.8884 0.1312 -3.9335 40 1 5.8924 2.3575 0.8329 41 1 6.8615 3.8655 2.6213 42 1 7.5680 6.1578 3.0886 43 1 9.6359 7.8688 3.3360 44 1 5.3236 7.5228 -0.3297 45 1 4.6222 5.2238 -0.7713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163609533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:21 Heat of formation + Delta-G solvation = -66.155386 kcal Electronic energy + Delta-G solvation = -22816.346178 eV Core-core repulsion = 19603.466078 eV Total energy + Delta-G solvation = -3212.880100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.44248 -39.34369 -37.50537 -36.13724 -34.81581 -34.60003 -31.88887 -31.42298 -30.61447 -27.25764 -27.00267 -24.90693 -23.36613 -22.98896 -22.53967 -21.49665 -20.16500 -19.33117 -18.18170 -17.68514 -17.05287 -16.68258 -16.50772 -15.76992 -15.47808 -15.20610 -14.85892 -14.72219 -14.44206 -14.26322 -14.04590 -13.96250 -13.77460 -13.26653 -13.18400 -12.83303 -12.80942 -12.71959 -12.68033 -12.41716 -12.38546 -11.91721 -11.84253 -11.79244 -11.59694 -11.51282 -11.49899 -11.21476 -11.12461 -10.56605 -10.29426 -9.47035 -8.99236 -8.74257 -6.23216 0.83208 1.15098 1.36636 1.46096 1.51285 1.87134 2.18229 2.44222 2.64446 3.69298 3.75386 3.79043 3.93425 4.15547 4.22383 4.29899 4.37527 4.41260 4.55634 4.56138 4.67697 4.73088 4.83577 4.85868 4.91917 4.94767 5.00520 5.08887 5.11339 5.15397 5.18298 5.23900 5.31653 5.33040 5.37775 5.44516 5.46138 5.49736 5.58686 5.64528 5.91595 6.03835 6.13340 6.35555 6.62553 6.82436 6.89246 7.00020 7.49800 8.18122 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.003156 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.340948 B = 8869.416443 C = 9185.710316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.100 4.100 4 C -0.096 4.096 5 C -0.103 4.103 6 C -0.131 4.131 7 C -0.147 4.147 8 C 0.501 3.499 9 O -0.574 6.574 10 N -0.646 5.646 11 C -0.009 4.009 12 C -0.105 4.105 13 C -0.195 4.195 14 C 0.076 3.924 15 C -0.497 4.497 16 H 0.073 0.927 17 C 0.047 3.953 18 N -0.796 5.796 19 Si 0.978 3.022 20 H -0.261 1.261 21 H -0.261 1.261 22 H -0.260 1.260 23 C -0.251 4.251 24 C -0.083 4.083 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.413 0.587 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.295 0.705 44 H 0.088 0.912 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 -17.131 -3.238 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.138 4.138 4 C -0.117 4.117 5 C -0.140 4.140 6 C -0.169 4.169 7 C -0.204 4.204 8 C 0.291 3.709 9 O -0.454 6.454 10 N -0.290 5.290 11 C -0.103 4.103 12 C -0.125 4.125 13 C -0.215 4.215 14 C 0.073 3.927 15 C -0.525 4.525 16 H 0.091 0.909 17 C -0.172 4.172 18 N -0.420 5.420 19 Si 0.798 3.202 20 H -0.186 1.186 21 H -0.185 1.185 22 H -0.184 1.184 23 C -0.272 4.272 24 C -0.103 4.103 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.250 0.750 41 H 0.140 0.860 42 H 0.130 0.870 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.315 -16.577 -3.390 18.433 hybrid contribution 0.426 1.013 0.402 1.171 sum -6.888 -15.563 -2.988 17.280 Atomic orbital electron populations 1.21780 0.95789 1.02142 1.01440 1.21555 0.95950 0.94649 1.03262 1.21442 0.92265 0.98323 1.01797 1.21431 0.97771 0.90624 1.01873 1.21619 1.01383 1.00107 0.90901 1.21609 1.01035 0.98448 0.95803 1.21736 1.00709 1.01620 0.96338 1.21507 0.80343 0.92745 0.76330 1.90627 1.57857 1.47536 1.49361 1.42976 1.16378 1.06468 1.63179 1.17220 1.08058 0.84701 1.00279 1.20460 0.99321 0.96818 0.95923 1.20928 1.06209 0.92349 1.01986 1.17946 0.90481 0.94063 0.90173 1.19778 1.15805 0.93304 1.23581 0.90921 1.26804 0.92409 1.02024 0.96012 1.69928 1.06469 1.37486 1.28087 0.85272 0.78920 0.77324 0.78661 1.18568 1.18517 1.18424 1.20684 1.09076 0.95860 1.01535 1.20567 0.98832 0.92661 0.98283 0.93474 0.93233 0.91332 0.90222 0.90824 0.93717 0.92320 0.86583 0.90916 0.87591 0.91745 0.95236 0.93323 0.92966 0.90791 0.74997 0.86000 0.86962 0.89423 0.89392 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.57 16 2 C -0.12 -1.73 5.69 30.60 0.17 -1.55 16 3 C -0.10 -2.22 3.96 30.60 0.12 -2.10 16 4 C -0.10 -2.10 2.50 -11.54 -0.03 -2.13 16 5 C -0.10 -1.84 4.81 30.59 0.15 -1.69 16 6 C -0.13 -3.01 5.28 30.59 0.16 -2.85 16 7 C -0.15 -2.72 9.91 71.98 0.71 -2.01 16 8 C 0.50 16.92 5.67 87.66 0.50 17.42 16 9 O -0.57 -24.79 12.68 -3.03 -0.04 -24.83 16 10 N -0.65 -22.36 5.31 -303.12 -1.61 -23.97 16 11 C -0.01 -0.42 6.35 38.56 0.24 -0.17 16 12 C -0.11 -4.87 9.89 22.13 0.22 -4.65 16 13 C -0.19 -10.38 8.78 22.48 0.20 -10.18 16 14 C 0.08 4.32 5.66 -21.28 -0.12 4.20 16 15 C -0.50 -27.70 8.98 23.39 0.21 -27.49 16 16 H 0.07 3.99 8.00 -2.91 -0.02 3.97 16 17 C 0.05 2.35 4.94 85.24 0.42 2.77 16 18 N -0.80 -40.56 11.10 21.82 0.24 -40.32 16 19 Si 0.98 37.86 29.65 68.60 2.03 39.90 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 C -0.25 -13.80 9.74 22.48 0.22 -13.58 16 24 C -0.08 -4.27 8.65 22.13 0.19 -4.07 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.96 6.50 -2.38 -0.02 0.94 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.51 6.26 -2.39 -0.01 1.49 16 32 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.11 1.29 6.42 -2.39 -0.02 1.27 16 35 H 0.06 1.47 6.62 -2.39 -0.02 1.45 16 36 H 0.03 0.91 6.51 -2.39 -0.02 0.90 16 37 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.41 10.85 8.82 -92.71 -0.82 10.03 16 41 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 42 H 0.11 6.06 5.88 -2.91 -0.02 6.05 16 43 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 44 H 0.09 4.70 8.06 -2.91 -0.02 4.68 16 45 H 0.11 5.47 6.00 -2.91 -0.02 5.45 16 Total: -1.00 -67.12 357.62 4.87 -62.25 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: 0.16 Total: 36.61 kcal Atomic # 6 Polarization: -53.73 SS G_CDS: 4.08 Total: -49.65 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -1.37 Total: -64.28 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.04 Total: -24.83 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.90 kcal Total: -67.12 4.87 -62.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163609533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.905 kcal (2) G-P(sol) polarization free energy of solvation -67.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds